BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48800.1
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913919 jgi|Araly1|913919|Al_scaffold_0001_4173 1031 0.0
Ahg913921 jgi|Araly1|913921|Al_scaffold_0001_4175 750 0.0
> Ahg913919 jgi|Araly1|913919|Al_scaffold_0001_4173
Length=1725
Score = 1031 bits (558), Expect = 0.0
Identities = 616/645 (96%), Gaps = 0/645 (0%)
Strand=Plus/Plus
Query 1168 GATTATTTAAAATCTGTGGCCAAATTTATATTTCATACCTTCCAAGAGTTTGAAAGAGAA 1227
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1081 GATTATTTAAAATCTGTGGCTAAATTTATATTTAATACCTTCCAAGAGTTTGAAAGAGAA 1140
Query 1228 GTGTCGTCAGAATCAGGAGGATCTTACAGCTTGAAAGCTACAATTGAAGATTGCAAGAGA 1287
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 GTGGGGTCAGAATCAGGAGGATCTTACAGCTTGAAAGCTACAATTGAAGACTGCAAGAGA 1200
Query 1288 ATGATGAGAAGCAACCTTCAACTTGCCAAATGGGCAGTAACGGGTCACTTGCCTAGCTTT 1347
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1201 ATGATGAGAAGCAATCTTCAACTGGCCAAATGGGCAGTAACGGGTCACTTGCCTGGCTTT 1260
Query 1348 GATGAGTACCTAGATGTCGCTGGAGTCGAGATCGCCGTATATTTTACCGTGGCAGGTATT 1407
||||||||||||||||| |||||||||||||| ||| || |||||||| |||||||||||
Sbjct 1261 GATGAGTACCTAGATGTTGCTGGAGTCGAGATAGCCATAGATTTTACCTTGGCAGGTATT 1320
Query 1408 TTGTTGGGCATGGAAAATATCAACAAGAAAGAAGCTTATGAGTGGTTGATATTTAGAGAC 1467
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTGTTGGGTATGGACAATATCAACAAGAAAGAAGCTTATGAGTGGTTGATATTTAGAGAC 1380
Query 1468 AAACTCGTAAGAGCAATGTCTACAAAAGCACGACTGGTGAATGATTTGTTTGGCTATAAG 1527
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 AAACTCGTTAGAGCAATGTCTACAAAAGCAAGACTGGTGAATGATTTGTTTGGCTATAAG 1440
Query 1528 GATGACATGAGGAGAGGATATGTCACGAACTCGATCAACTGTTATAAGAAGCAATATGGA 1587
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1441 GATGACATGAGGAGAGGATATGTCACGAACTCGATTAACTGTTATAAGAAGCAATATGGA 1500
Query 1588 GTTACCGAAGAAGAAGCCTTTAGAAAGCTTCATCAAATGGTTGCGGACGGTGATAAGATG 1647
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1501 GTTACCGAAGAAGAAGCCTTTAGAAAGCTTCATCAAATAGTTGCGGAAGGTGATAAGATG 1560
Query 1648 ATGAATGAGGAGTTTTTGAAGCCAATCAATGTGCCACATCAGGTTCTAAAAGCAGTCCTC 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 ATGAATGAGGAGTTTTTGAAGCCAATCAATGTGCCACATCAGGTTCTAAAAGCAGTCCTC 1620
Query 1708 GACACTTTACGTGCAATTAACATTTGCTACGACAATGAAGATGGATTTACCCGACTCAAT 1767
||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 1621 GACACGTTACGTGCGGTTAATATTTGCTACGACAATGAAGATGGATTTACCCGTCTCGAT 1680
Query 1768 GGTAATCTGAAGAACTACATCACGTCTATGTACGTTGATCTTTGA 1812
|| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1681 GGCAATCTCAAGAACTACATCACGTCTATGTACGTTGATATTTGA 1725
Score = 1020 bits (552), Expect = 0.0
Identities = 680/740 (92%), Gaps = 15/740 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCCATAAGAGTTTTTGGACCAAAACTTGGATCTAGACTCTCTATTCGTTCTCAC 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAAGCCATAAGAGTTTTTGGACCAAAACTTGGATCTAAACTCTCTATTCGTTCTCAG 60
Query 61 ACCACTGCATTTCCGGCATGCAAACTCTCTCGCTTTCCGCTAACGTC--ATTTCCCGGTA 118
|||| |||||||||| ||||||||||||||| ||||||||| || || |||| || | |
Sbjct 61 ACCAGTGCATTTCCGCCATGCAAACTCTCTCCCTTTCCGCTGAC-TCAAATTT-CCAGCA 118
Query 119 AGCATGC-ACATCTTGTTCTTTTGAAGGCCACTACTATTCCTCTGGCGTCTGGTGACAAA 177
||| | | |||||| ||| ||||| ||||||||||||||||||||| | || ||| |||
Sbjct 119 AGCCT-CTCCATCTTATTCCTTTGAGGGCCACTACTATTCCTCTGGCTTGTGATGATAAA 177
Query 178 GAAAATAATCGCAAATTCGAAAAGTTGGGTCCTTCTGAATGGGG-CAATCAATTCCTTTT 236
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 178 GAAAATAATCGCAAATTCGAAAAGTTGGGTCCTTCTGAATGGGGTC-ATCAATTCCTCTC 236
Query 237 TGCTCATGTTGATCTCTCAGAAATGGATGCGCTTGAGAGAGAGATTGAGGCACTAAAGCC 296
||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||
Sbjct 237 TGCTCATGTTGATCTCTCAGAAATGGAGGCGCTCGGGAGAGAGATAGAGGCACTAAAGCC 296
Query 297 GAAAGTGAGGGACATGTTCATGTCTTTCAAAGGAATGAAGTCGAACAAGAAGAATTTGT- 355
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 297 GAAAGTGAGGGACATGTTCAAGTCTTTCAAAGGAATGAAGTCGAACAAGAAGAATTT-TC 355
Query 356 TTTTGATATATTTGCTTGTGAGTCTTGGTCTCGCTCATCATTTCGAGGATGAGATCGAGG 415
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 356 TTTTAATATATTTGCTTGTGAGTCTTGGTCTCGCACATCATTTCGAGGATGAGATCGAGA 415
Query 416 AGAGTGTCAAAGGTTG-TTCCCAAGAGATGGTGGAGATGATGGAC-GGTGAAAATGATTT 473
||||| ||||| | || |||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 416 AGAGTATCAAA-GATGATTCCCAAGAGATGGAGGAGATGATGG-CGGGTGAAAATGATTT 473
Query 474 GTACACAGTTTCCATCATCTTCTGGGTTTTCAGGACATATGGTCACAACATTTCTTCTGA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 GTACACAGTTTCCATCATCTTCTGGGTTTTCAGGACATATGGTCACAACATTTCTTCCGA 533
Query 534 TATTTTTAACAGATTTAAAGGACACAATGGAAAGTTTAAGGAATGTCTTGCCACCGATGC 593
| ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 534 TGTTTTTAACAGATTCAAAGGGGACAACGGAAAATTTAAGGAATGTCTTGCCACCGATGC 593
Query 594 TAAGGGTATCCTAAGCTTGTATGAAGCTGCTCACATGGGGACGACAACCGATTATATATT 653
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 594 TAAGGGTATCCTGAGCTTGTATGAAGCTGCTCACATGGGGACGACGACCGATTATATATT 653
Query 654 GGATGAAGCCTTGAGCTTCACATTGAGTTACTTGGAGTCGTTAGCTGCAAATGGGACATG 713
||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||| |||
Sbjct 654 GGATGAAGCCTTGAGCTTCGCATTGAGTTACTTGAAGTCGTTAGCAGCAAGTGGGATATG 713
Query 714 CAAACCTAATCTCGTGAGGC 733
||||||||||||| | ||||
Sbjct 714 CAAACCTAATCTC-TCAGGC 732
Score = 508 bits (275), Expect = 4e-143
Identities = 313/332 (94%), Gaps = 0/332 (0%)
Strand=Plus/Plus
Query 766 AAGAACGTGGAGATATTAGTCGCAAAGGAATATATCCGGTTCTACGAACAAGAAGAAGAT 825
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 736 AAGAACGTGGAGATATTAGTCGCAAAGGAATATATCCGGTTCTATAAACAAGAAGAAGAT 795
Query 826 TGCGATAAGACTATACTCGAGTTTTCCATGCTTAACCTCAAATTCCTACAGCTACATTAC 885
|||||||| || ||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 796 TGCGATAATACGCTACTCAAGTTTGCCAAGCTTAACCTCAAATTCCTACAGCTACATTAC 855
Query 886 CTTCAAGAACTCAAACTTCTTACAAAATGGTACAAGGAACAAGACTTTGAATCCAAGTTG 945
||||||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 856 CTTCAAGAACTCAAAATCCTTTCAAAATGGTACAAGGAACAAGACTTTGAATCTAAGTTG 915
Query 946 CCACCTTACTACAGAGACAGAATCGTGGAACTGCACCTCGCTACGCTAGCATACATCAAT 1005
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 916 CCACCTTACTACAGAGACAGAATCGCGGAACTGCACCTCGCTACGCTAGCATACATCAAT 975
Query 1006 CCGAAATACTCACGTGTGAGGATTATTCTGACTATGATTTACACTATTCAAATAATTCTA 1065
|| ||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||
Sbjct 976 CCAAAATACTCACGTGTGAGAATTTTTCTGACTAAGATTTACACGATTCAAATAATTCTA 1035
Query 1066 GATGATACGTGTGACAGATATGCTTCTCTTCG 1097
|||||||| |||||||||||||||||||||||
Sbjct 1036 GATGATACATGTGACAGATATGCTTCTCTTCG 1067
> Ahg913921 jgi|Araly1|913921|Al_scaffold_0001_4175
Length=1581
Score = 750 bits (406), Expect = 0.0
Identities = 668/787 (85%), Gaps = 48/787 (6%)
Strand=Plus/Plus
Query 35 GATCTAGACTCTCTATTCGTTCTCACACCACTGCATTTCCGGCATGCAAACTCTCTCGCT 94
|||||| |||||||||||||||| | |||| |||| |||||||||||| | |||||||
Sbjct 23 GATCTAAACTCTCTATTCGTTCTGAAACCAAAACATTACCGGCATGCAAAGTGTCTCGCT 82
Query 95 TTCCGCTAACGTCATTTCCCGGTAAGCATGCACATCTTGTTCTTTTGAAGGCCACTACTA 154
||||||| |||||||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 83 TTCCGCTGACGTCATTTCCCGGCAAGCATGCACATATTGTTCCTTTGAAGGCCACTACTA 142
Query 155 TT-C--CTCTGGCGTCTGGTGAC-A--AAGAAAATAATCGCAAATTCGAAA-AGTTGGGT 207
|| | ||||||| | | ||||| | |||||||||||||||| | | ||| || |||
Sbjct 143 TTACTTCTCTGGCTTATTGTGACGATGAAGAAAATAATCGCAAGTAC-AAAGAGATGGCC 201
Query 208 CCTTCTGAATGGGG-CAATCAATTCCTTTTTGCTCATGTTGATCTCTCAGAAATGGATGC 266
|||||||||||||| | ||| |||||| | ||||||||||||| |||||||||||||||
Sbjct 202 CCTTCTGAATGGGGTC-ATCGATTCCTCTCTGCTCATGTTGATTTCTCAGAAATGGATGT 260
Query 267 GCTTGAGAGAGAGATTGAGGCACTAAAGCCG-AAAGTGAGGGACATGTTCATGTCTTTCA 325
||||| ||||||||| ||||||||||||||| ||| ||||||||||||| ||||||| ||
Sbjct 261 GCTTGGGAGAGAGATAGAGGCACTAAAGCCGCAAA-TGAGGGACATGTTGATGTCTTCCA 319
Query 326 AAGG----AATGAAGTCGAACAAGAAG-AATTTGTTTTTGATATATTTGCTTGTGAGTCT 380
|||| ||| ||||||| ||||||| || | | ||| || |||||||||||||||||
Sbjct 320 AAGGCATTAAT-AAGTCGAGCAAGAAGAAAATCCTATTT-ATCTATTTGCTTGTGAGTCT 377
Query 381 TGGTCTCGC-TCATCATTTCGAGGATGAGATCGAGGAGAGTGTCAAAGGTTGTTC-CCAA 438
||||||||| | |||||||||||||||||||||||||||| | ||| | || || | |
Sbjct 378 TGGTCTCGCGT-TTCATTTCGAGGATGAGATCGAGGAGAGTCT-AAAAGATGGTCTTCGA 435
Query 439 GAGATGGTGGAGATGATGGAC-GGTGAAAATGATTTGTACACAGTTTCCATCATCTTCTG 497
||||| | |||||| |||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 436 GAGATAGAGGAGATTATGG-CTGGTGAAGATGATTTGTACACAGTTTCCATCATCTTCTG 494
Query 498 GGTTTTCAGGACATATGGTCACAACATTTCTTCTGATATTTTTAACAGATTTAAAGGACA 557
||||||||||||||||||||||||||||||||||| || | |||
Sbjct 495 GGTTTTCAGGACATATGGTCACAACATTTCTTCTG------------GA------G-ACA 535
Query 558 CAATGGAAAGTTTAAGGAATGTCTTGCCACCGATGCTAAGGGTATCCTAAGCTTGTATGA 617
| |||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 536 -A-TGGAAAATTTAAGGAATGTCTTGCTAAAGATGCTAAGGGTATCCTGAGCTTGTATGA 593
Query 618 AGCTGCTCACATGGGGACGACAACCGATTATATATTGGATGAAGCCTTGAGCTTCACATT 677
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 594 AGCTGCTCACATGGGGACGACAACAGATTATATATTGGATGAAGCCTTGAGCTTCACATT 653
Query 678 GAGTTACTTGGAGTCGTTAGCTGCAAATGGGACATGCAAACCTAATCTCGTGAGG-CGTA 736
|||| ||||||||||| ||||||||| |||||||||||||| ||| ||| | | | ||||
Sbjct 654 GAGTAACTTGGAGTCGCTAGCTGCAAGTGGGACATGCAAACTTAACCTC-TCAAGACGTA 712
Query 737 TACGAAATGCATTGGGTCTTTTGCAGAACAAGAACGTGGAGATATTAGTCGCAAAGGAAT 796
||||||| || |||| || |||| | || ||| ||||||||||||||||||||||||
Sbjct 713 TACGAAAAGCTTTGGATCAACCGCAGCATAAAAACATGGAGATATTAGTCGCAAAGGAAT 772
Query 797 ATATCCG 803
|||||||
Sbjct 773 ATATCCG 779
Score = 521 bits (282), Expect = 5e-147
Identities = 362/401 (90%), Gaps = 4/401 (1%)
Strand=Plus/Plus
Query 1275 AGATTGCAAGAGAATGATGAGAAGCAACCTTCAACTTGCCAAATGGGCAGTAACGGGTCA 1334
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1044 AGAATGCAAGAGAATGATGAGAAGCAATCTTCAACTGGCCAAATGGGCAGTAACGGGTCA 1103
Query 1335 CTTGCCTAGCTTTGATGAGTACCTAGATGTCGCTGGAGTCGAGATCGC-CGTATATTTTA 1393
|||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||
Sbjct 1104 CTTGCCTAGCTTTGATGAGTACCTAGATGTTTCTGGTGTCGAGATCGCTC-TATATTTTA 1162
Query 1394 CCGTGGCAGGTATTTTGTTGGGCATGGAAAATATCAACAAGAAAGAAGCTTATGAGTGGT 1453
|| ||||| |||||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct 1163 CCCTGGCATGTATTTTGATGGGTATGGAAAATATCTGCAAGAAAGAAGCTTATGAGTGGT 1222
Query 1454 TGATATTTAGAGACAAACTCGTAAGAGCAATGTCTACAAAAGCACGACTGGTGAATGATT 1513
||| || ||||||||||||||| |||||| || | ||||||||||| || ||||||||
Sbjct 1223 TGAAATCTAGAGACAAACTCGTTAGAGCATTGACCGCAAAAGCACGAGTGTTGAATGATA 1282
Query 1514 TGTTTGGCTATA-AGGATGACATGAGGAGAGGATATGTCACGAACTCGATCAACTGTTAT 1572
| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1283 TACTTGGCT-TCGAGGATGACATGAGCCGAGGATATGTCACGAACTCGATCAACTGTTAT 1341
Query 1573 AAGAAGCAATATGGAGTTACCGAAGAAGAAGCCTTTAGAAAGCTTCATCAAATGGTTGCG 1632
||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1342 AAGAAACAATATGGAGTTACAGAAGAAGAGGCTTTTAGAAAGCTTCATCAAATGGTTGCA 1401
Query 1633 GACGGTGATAAGATGATGAATGAGGAGTTTTTGAAGCCAAT 1673
||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1402 GACCTTGATAAGATGATGAATGAGGAGTTTTTGAAGACAAT 1442
Score = 315 bits (170), Expect = 1e-84
Identities = 239/272 (88%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 959 GAGACAGAATCGTGGAACTGCACCTCGCTACGCTAGCATACATC-AATCCGAAATACTCA 1017
||||||||||||||||| ||||||||| ||| ||| ||||| || || || |||||||||
Sbjct 779 GAGACAGAATCGTGGAAATGCACCTCGTTACACTAACATACTTCGAA-CCAAAATACTCA 837
Query 1018 CGTGTGAGGAT-TATTCTGACTATGATTTACACTATTCAAATAATTCTAGATGATACGTG 1076
||||||||||| | ||||||||| |||||| || |||||||| ||| |||||||||||||
Sbjct 838 CGTGTGAGGATCT-TTCTGACTAAGATTTATACGATTCAAATCATTGTAGATGATACGTG 896
Query 1077 TGACAGATATGCTTCTCTTCGTGAGGTCGAAAGCCTCGCTGCA-ACCATCGAAAGATGGG 1135
||||||||||||||||||| ||||||| ||||||||||| | | || |||||||| ||||
Sbjct 897 TGACAGATATGCTTCTCTTGGTGAGGTTGAAAGCCTCGCAG-ATACAATCGAAAGGTGGG 955
Query 1136 ATCACAATGATCATGCCATGGAGGGACTACCGGATTATTTAAAATCTGTGGCCAAATTTA 1195
||| | ||||||||| ||| || | |||||| ||||||||||||||||| | |||||||
Sbjct 956 ATCCCGATGATCATGGCATAGATGAACTACCAGATTATTTAAAATCTGTAGTGAAATTTA 1015
Query 1196 TATTTCATACCTTCCAAGAGTTTGAAAGAGAA 1227
||||| ||||||||||||||||||||||||||
Sbjct 1016 TATTTGATACCTTCCAAGAGTTTGAAAGAGAA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5