BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48820.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913921 jgi|Araly1|913921|Al_scaffold_0001_4175 880 0.0
Ahg913919 jgi|Araly1|913919|Al_scaffold_0001_4173 514 8e-145
> Ahg913921 jgi|Araly1|913921|Al_scaffold_0001_4175
Length=1581
Score = 880 bits (476), Expect = 0.0
Identities = 705/812 (87%), Gaps = 30/812 (4%)
Strand=Plus/Plus
Query 881 GAGACAGACTCGTTG-AATGTCACTTCGCGT-CACTAACATGCTTCGAACCAAAATACGC 938
|||||||| |||| | |||| ||| ||| | ||||||||| |||||||||||||||| |
Sbjct 779 GAGACAGAATCGTGGAAATG-CACCTCG-TTACACTAACATACTTCGAACCAAAATACTC 836
Query 939 ACGTGCGAGGATCTTTTTGAGTAAGATTTTTACGGTTCAAAT-ATTTATAGATGATACGT 997
||||| |||||||||| ||| |||||||| |||| ||||||| | || ||||||||||||
Sbjct 837 ACGTGTGAGGATCTTTCTGACTAAGATTTATACGATTCAAATCA-TTGTAGATGATACGT 895
Query 998 GTGACAGGTATGCTTCTCTTGGTGAGGTTGAAAGCCTCGCAGATACCATCGAAAGGTGGG 1057
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 896 GTGACAGATATGCTTCTCTTGGTGAGGTTGAAAGCCTCGCAGATACAATCGAAAGGTGGG 955
Query 1058 ATCCCGATGATCATGCCATGGATGGACTACCAGATTATTTGAAATCTGTAGTTAAATTTG 1117
||||||||||||||| ||| |||| ||||||||||||||| ||||||||||| ||||||
Sbjct 956 ATCCCGATGATCATGGCATAGATGAACTACCAGATTATTTAAAATCTGTAGTGAAATTTA 1015
Query 1118 TATTCAATACCTTCCAAGAGTTTGAAAGA-AAGTGCAAGAG-ATCGTTGAGGATCAACCT 1175
|||| ||||||||||||||||||||||| || |||||||| || | |||| | ||| ||
Sbjct 1016 TATTTGATACCTTCCAAGAGTTTGAAAGAGAA-TGCAAGAGAAT-GATGAGAAGCAATCT 1073
Query 1176 TCAAGTCGCTAAATGGGTA-AAAGCGGGTCACTTGCCTAGCTTTGATGAGTACCTAGATG 1234
|||| | || ||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1074 TCAACTGGCCAAATGGGCAGTAA-CGGGTCACTTGCCTAGCTTTGATGAGTACCTAGATG 1132
Query 1235 TTGCTGGACTCGAGCTCGCTATATCTTTTACCTTCGCAGGTATTTTGATGGGTATGGAAA 1294
|| |||| ||||| ||||| ||| ||||||| | ||| |||||||||||||||||||||
Sbjct 1133 TTTCTGGTGTCGAGATCGCTCTATATTTTACCCTGGCATGTATTTTGATGGGTATGGAAA 1192
Query 1295 ATGTCTGCAAGCCGGAAGCTTATGAGTGGTTGAAATCTAGAGACAAACTCGTTAGAGGAG 1354
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1193 ATATCTGCAAGAAAGAAGCTTATGAGTGGTTGAAATCTAGAGACAAACTCGTTAGAGCAT 1252
Query 1355 TAATTACAAAAGTC-CGATTGTTGAATGATAT-CTTTGGCTAT-GAGGATGACATGAGGA 1411
| | |||||| | ||| ||||||||||||| ||| |||| | ||||||||||||||
Sbjct 1253 TGACCGCAAAAG-CACGAGTGTTGAATGATATACTT-GGCT-TCGAGGATGACATGAGCC 1309
Query 1412 GAGGATATGTCACGAACTCGATCAACTGTTATAAGAAGCAATACGGAGTTACGGAAGAAG 1471
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1310 GAGGATATGTCACGAACTCGATCAACTGTTATAAGAAACAATATGGAGTTACAGAAGAAG 1369
Query 1472 AGGCTATTAGAAAGCTTCATCAAATTGTTGCAGACGGTGAAAAGATGATGAATGAGGAGT 1531
||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 1370 AGGCTTTTAGAAAGCTTCATCAAATGGTTGCAGACCTTGATAAGATGATGAATGAGGAGT 1429
Query 1532 TTTTGAAGCCAATCAATGTGCCATACCAGGTTCCAAAGGTAGTCATTCTCGACACTTTAC 1591
|||||||| |||| || | || | || || | || ||||| ||||||||||||
Sbjct 1430 TTTTGAAGACAATTTAT-T---AT-C----TT--AA-GATATTCATTATCGACACTTTAC 1477
Query 1592 GTGCGGCGAATGTCAGCTATGAAAAGGATGATGAATTTACCCGTCCTGGTGAACATCTCA 1651
| || |||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1478 GCGCAGCGAATGTTAGTTATGAAAAGGATGATGAATTCACCCGTCCTGGTGAACATCTCA 1537
Query 1652 AGAACTGCATCACGTCAATTTATTTTGATCTT 1683
||||||| ||||||||| | || ||||||||
Sbjct 1538 AGAACTGTATCACGTCACTGTACGTTGATCTT 1569
Score = 453 bits (245), Expect = 2e-126
Identities = 386/451 (86%), Gaps = 22/451 (5%)
Strand=Plus/Plus
Query 35 GATCTAAACTCTCTATTCATTCTCAGACCAATGCATTTCCGGCATTTAAACTCTCTCGCT 94
|||||||||||||||||| |||| | ||||| |||| ||||||| ||| | |||||||
Sbjct 23 GATCTAAACTCTCTATTCGTTCTGAAACCAAAACATTACCGGCATGCAAAGTGTCTCGCT 82
Query 95 TTCCGCTGACGTCATTTCCCGGAAAGCATGCACATCTTGATCCTTTGAAGGCCACTAC-- 152
|||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||
Sbjct 83 TTCCGCTGACGTCATTTCCCGGCAAGCATGCACATATTGTTCCTTTGAAGGCCACTACTA 142
Query 153 TCA-TCCTTTGGC-T-TT-TGACGGTGAAGAAAATAATCGCGAA-TTCAAAAATTTGGGT 207
| | | || |||| | || ||||| |||||||||||||||| || | |||| | |||
Sbjct 143 TTACTTCTCTGGCTTATTGTGACGATGAAGAAAATAATCGC-AAGTACAAAGAGATGGCC 201
Query 208 CCTTCTGAATGGGGTCATCAATTCCTCTCTGCTCATGTTGATCTCTCAGAAATGGATGCG 267
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 202 CCTTCTGAATGGGGTCATCGATTCCTCTCTGCTCATGTTGATTTCTCAGAAATGGATGTG 261
Query 268 CTTGAGAGAGAGATAGAGGCACTAAAGCCA-AAAGTAAGGGACATGTTGATATCTTCT-- 324
|||| |||||||||||||||||||||||| ||| | |||||||||||||| |||||
Sbjct 262 CTTGGGAGAGAGATAGAGGCACTAAAGCCGCAAA-TGAGGGACATGTTGATGTCTTCCAA 320
Query 325 -G--A-------GTCGAGCAAGAAGAAAATCCTTTTTCTATATTTGCTTGTGAGTCTTGG 374
| | ||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 321 AGGCATTAATAAGTCGAGCAAGAAGAAAATCCTATTTATCTATTTGCTTGTGAGTCTTGG 380
Query 375 TCTCGCATATCATTTCGAGGATGAGATCAAGGAAAGTCTAGAAGATGGTCTTCAAAAGAT 434
|||||| | ||||||||||||||||||| |||| |||||| |||||||||||| | ||||
Sbjct 381 TCTCGCGTTTCATTTCGAGGATGAGATCGAGGAGAGTCTAAAAGATGGTCTTCGAGAGAT 440
Query 435 AGAGGAGATGATGGCTAGTGAAGATGATTTG 465
||||||||| |||||| ||||||||||||||
Sbjct 441 AGAGGAGATTATGGCTGGTGAAGATGATTTG 471
Score = 363 bits (196), Expect = 3e-99
Identities = 232/250 (93%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 475 GGAGACAATGGAAAATTTAAGGAATGTCTAGCTAAAGATGCTAAGGGTATCCTGAGCTTG 534
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 529 GGAGACAATGGAAAATTTAAGGAATGTCTTGCTAAAGATGCTAAGGGTATCCTGAGCTTG 588
Query 535 TATGAAGCTGCTCACATGGGAACAACGACCGATTATATATTGGATGAAGCCTTGAGCTTC 594
|||||||||||||||||||| || || || ||||||||||||||||||||||||||||||
Sbjct 589 TATGAAGCTGCTCACATGGGGACGACAACAGATTATATATTGGATGAAGCCTTGAGCTTC 648
Query 595 ACATTGACTTACATGGAGTCGTTAGCTGCAAGTGGGACTTGCAAAATTAATCTCTCAAGG 654
||||||| | || |||||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct 649 ACATTGAGTAACTTGGAGTCGCTAGCTGCAAGTGGGACATGCAAACTTAACCTCTCAAGA 708
Query 655 CGTATACGAAAAGCTTTGGATCAACCGCAACATAAGAACATGGAGATAATAGTCGCAATG 714
||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |
Sbjct 709 CGTATACGAAAAGCTTTGGATCAACCGCAGCATAAAAACATGGAGATATTAGTCGCAAAG 768
Query 715 AAATATATCC 724
|||||||||
Sbjct 769 GAATATATCC 778
> Ahg913919 jgi|Araly1|913919|Al_scaffold_0001_4173
Length=1725
Score = 514 bits (278), Expect = 8e-145
Identities = 457/542 (84%), Gaps = 17/542 (3%)
Strand=Plus/Plus
Query 1150 TGCAAGAG-ATCGTTGAGGATCAACCTTCAAGTCGCTAAATGGGTA-AAAGCGGGTCACT 1207
|||||||| || | |||| | ||| |||||| | || ||||||| | || |||||||||
Sbjct 1192 TGCAAGAGAAT-GATGAGAAGCAATCTTCAACTGGCCAAATGGGCAGTAA-CGGGTCACT 1249
Query 1208 TGCCTAGCTTTGATGAGTACCTAGATGTTGCTGGACTCGAGCTCGCTATATCTTTTACCT 1267
||||| ||||||||||||||||||||||||||||| ||||| | || ||| ||||||||
Sbjct 1250 TGCCTGGCTTTGATGAGTACCTAGATGTTGCTGGAGTCGAGATAGCCATAGATTTTACCT 1309
Query 1268 TCGCAGGTATTTTGATGGGTATGGAAAATGTCTGCAAGCCGGAAGCTTATGAGTGGTTGA 1327
| |||||||||||| |||||||||| ||| || |||| |||||||||||||||||||
Sbjct 1310 TGGCAGGTATTTTGTTGGGTATGGACAATATCAACAAGAAAGAAGCTTATGAGTGGTTGA 1369
Query 1328 AATCTAGAGACAAACTCGTTAGAGGAGTAAT-TACAAAAGTC-CGATTGTTGAATGATAT 1385
|| |||||||||||||||||||| | | | |||||||| | || || |||||||| |
Sbjct 1370 TATTTAGAGACAAACTCGTTAGAGCAAT-GTCTACAAAAG-CAAGACTGGTGAATGATTT 1427
Query 1386 CTTTGGCTATGAGGATGACATGAGGAGAGGATATGTCACGAACTCGATCAACTGTTATAA 1445
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1428 GTTTGGCTATAAGGATGACATGAGGAGAGGATATGTCACGAACTCGATTAACTGTTATAA 1487
Query 1446 GAAGCAATACGGAGTTACGGAAGAAG-AGGCTATTAGAAAGCTTCATCAAATTGTTGCAG 1504
||||||||| |||||||| ||||||| || || ||||||||||||||||||| ||||| |
Sbjct 1488 GAAGCAATATGGAGTTACCGAAGAAGAAGCCT-TTAGAAAGCTTCATCAAATAGTTGCGG 1546
Query 1505 ACGGTGAAAAGATGATGAATGAGGAGTTTTTGAAGCCAATCAATGTGCCATACCAGGTTC 1564
| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1547 AAGGTGATAAGATGATGAATGAGGAGTTTTTGAAGCCAATCAATGTGCCACATCAGGTTC 1606
Query 1565 CAAAGGTAGTCATTCTCGACACTTTACGTGCGGCGAATGTCAGCTATGAAAAGGATGATG 1624
||| | |||| |||||||| |||||||||| ||| | |||| || || || ||||
Sbjct 1607 TAAAAGCAGTC---CTCGACACGTTACGTGCGGTTAATATTTGCTACGACAATGAAGATG 1663
Query 1625 AATTTACCCGTCCTGG-TGAACA-TCTCAAGAACTGCATCACGTCAATTTATTTTGATCT 1682
||||||||||| | | || || ||||||||||| ||||||||| || || ||||| |
Sbjct 1664 GATTTACCCGTC-TCGATGG-CAATCTCAAGAACTACATCACGTCTATGTACGTTGATAT 1721
Query 1683 TT 1684
||
Sbjct 1722 TT 1723
Score = 484 bits (262), Expect = 7e-136
Identities = 414/483 (86%), Gaps = 27/483 (6%)
Strand=Plus/Plus
Query 1 ATGGAAGCCATAAGAGTTTTTGGACTAAAACTTGGATCTAAACTCTCTATTCATTCTCAG 60
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAAGCCATAAGAGTTTTTGGACCAAAACTTGGATCTAAACTCTCTATTCGTTCTCAG 60
Query 61 ACCAATGCATTTCCGGCATTTAAACTCTCTCGCTTTCCGCTGACGTC--ATTTCCCGGAA 118
|||| |||||||||| ||| |||||||||| |||||||||||| || |||| || | |
Sbjct 61 ACCAGTGCATTTCCGCCATGCAAACTCTCTCCCTTTCCGCTGAC-TCAAATTT-CCAGCA 118
Query 119 AGCATGC-ACATCTTGA-TCCTTTGAAGGCCACTACTCA-TCCTTTGGCTTTTGACGGTG 175
||| | | |||||| | |||||||| |||||||||| | |||| |||||| ||| | |
Sbjct 119 AGCCT-CTCCATCTT-ATTCCTTTGAGGGCCACTACT-ATTCCTCTGGCTTGTGATGATA 175
Query 176 AAGAAAATAATCGCGAATTCAAAAATTTGGGTCCTTCTGAATGGGGTCATCAATTCCTCT 235
|||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 176 AAGAAAATAATCGCAAATTCGAAAAGTTGGGTCCTTCTGAATGGGGTCATCAATTCCTCT 235
Query 236 CTGCTCATGTTGATCTCTCAGAAATGGATGCGCTTGAGAGAGAGATAGAGGCACTAAAGC 295
|||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 236 CTGCTCATGTTGATCTCTCAGAAATGGAGGCGCTCGGGAGAGAGATAGAGGCACTAAAGC 295
Query 296 CAAAAGTAAGGGACATGTTGATA-TCTT-C-------TGA-GTCGAGCAAGAAGAAAATC 345
| ||||| ||||||||||| | | |||| | ||| ||||| ||||||||| |
Sbjct 296 CGAAAGTGAGGGACATGTTCA-AGTCTTTCAAAGGAATGAAGTCGAACAAGAAGAATTTT 354
Query 346 CTTTTTCTATATTTGCTTGTGAGTCTTGGTCTCGCATATCATTTCGAGGATGAGATCAAG 405
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 355 CTTTTAATATATTTGCTTGTGAGTCTTGGTCTCGCACATCATTTCGAGGATGAGATCGAG 414
Query 406 GAA-AGTCT-AGAAGATGGTCTTCAAA-AGATAGAGGAGATGATGGCTAGTGAAGATGAT 462
|| ||| | | |||||| | | | || |||| |||||||||||||| ||||| |||||
Sbjct 415 -AAGAGTATCA-AAGATGAT-TCCCAAGAGATGGAGGAGATGATGGCGGGTGAAAATGAT 471
Query 463 TTG 465
|||
Sbjct 472 TTG 474
Score = 250 bits (135), Expect = 3e-65
Identities = 173/191 (91%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 466 AGATTCAAAGGAGACAATGGAAAATTTAAGGAATGTCTAGCTAAAGATGCTAAGGGTATC 525
||||||||||| ||||| |||||||||||||||||||| || | |||||||||||||||
Sbjct 544 AGATTCAAAGGGGACAACGGAAAATTTAAGGAATGTCTTGCCACCGATGCTAAGGGTATC 603
Query 526 CTGAGCTTGTATGAAGCTGCTCACATGGGAACAACGACCGATTATATATTGGATGAAGCC 585
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 604 CTGAGCTTGTATGAAGCTGCTCACATGGGGACGACGACCGATTATATATTGGATGAAGCC 663
Query 586 TTGAGCTTCACATTGACTTACATGGAGTCGTTAGCTGCAAGTGGGACT-TGCAAAATTAA 644
||||||||| |||||| |||| || |||||||||| |||||||||| | |||||| |||
Sbjct 664 TTGAGCTTCGCATTGAGTTACTTGAAGTCGTTAGCAGCAAGTGGGA-TATGCAAACCTAA 722
Query 645 TCTCTCAAGGC 655
||||||| |||
Sbjct 723 TCTCTCA-GGC 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5