BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48830.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474020 jgi|Araly1|474020|fgenesh2_kg.1__3974__AT1G48830.1 1125 0.0
> Ahg474020 jgi|Araly1|474020|fgenesh2_kg.1__3974__AT1G48830.1
Length=741
Score = 1125 bits (609), Expect = 0.0
Identities = 708/753 (94%), Gaps = 18/753 (2%)
Strand=Plus/Plus
Query 1 AGCTTTAGGGtttttttCAGCGGAGATTAGCTTCAGTATCCATTGGCGGA-TTAGCCT-C 58
|||| ||||||||||||| || | ||||||||||||||||||||||| || || | | |
Sbjct 1 AGCTCTAGGGTTTTTTTCTGC-G-GATTAGCTTCAGTATCCATTGGC-GATTTTG-ATCC 56
Query 59 AGAGTGCTCTGATCAAGGTTTTGGAGGTTGCATTTGAGTG---AGGAGATGTTTTCGGCT 115
| ||||||||| | ||||||||||||||||||||| || ||||||||||| |
Sbjct 57 ACAGTGCTCTG----A---TTTGGAGGTTGCATTTGAGTGAAAAGAAGATGTTTTCGTTT 109
Query 116 CAGCATAAGATTCATAAGGAGAAGGGTGTGGAACTTTCTGAATTGGATGAGCAAGTTGCT 175
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 110 CAGCATAAGATTCACAAGGAAAAGGGTGTGGAACTTTCTGAATTGGATGAGCAAGTTGCT 169
Query 176 CAGGCTTTCTTTGATTTGGAGAACACCAATCAAGAATTGAAAAGTGAGCTGAAGGATTTA 235
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 170 CAGGCTTTCTTTGATTTGGAGAACACCAATCAAGAATTGAAAAGTGAGTTGAAGGATTTA 229
Query 236 TACGTCAACTCGGCTGTTCAAGTTGATATCTCTGGAGGACGCAAGGCAATTGTTGTCAAT 295
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 230 TACGTCAACTCGGCTGTTCAAGTTGATATATCTGGAGGACGCAAGGCAATTGTTATCAAT 289
Query 296 GTTCCTTACAGACTGAGAAAAGCTTACCGGAAAATCCATGTTAGGCTTGTTCGTGAACTT 355
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 290 GTTCCTTACAGATTGAGAAAAGCTTACCGCAAAATCCATGTTAGGCTTGTTCGTGAACTT 349
Query 356 GAGAAGAAGTTCAGTGGAAAGGATGTGATCCTCATTGCTACAAGGAGGATTGTGAGGCCG 415
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 350 GAGAAGAAGTTCAGTGGAAAGGATGTGATCCTCATTGCTACCAGGAGGATTGTGAGGCCA 409
Query 416 CCAAAGAAGGGTTCAGCGGCAAAGAGACCACGCAACCGTACTCTGACCTCAGTCCATGAA 475
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CCTAAGAAGGGCTCAGCTGCAAAGAGACCACGCAACCGTACTCTGACCTCAGTCCATGAA 469
Query 476 GCTATTCTTGATGATGTGGTCTTACCTGCAGAGATTGTTGGGAAGCGCACAAGGTACAGA 535
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GCCATTCTTGATGATGTTGTCTTACCTGCAGAGATTGTTGGGAAGCGCACAAGGTACAGA 529
Query 536 CTCGACGGTACCAAAATCATGAAGGTCTTCTTGGACCCAAAGGAAAGGAACAACACAGAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CTCGACGGTACCAAAATCATGAAGGTCTTCTTGGACCCAAAGGAAAGGAACAACACAGAG 589
Query 596 TACAAGGTTGAGGCTTTCTCTGCGGTTTACAAGAAGCTCACTGGCAAAGATGTCGTCTTT 655
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 590 TACAAGGTTGAGGCTTTCTCTGCTGTTTACAAGAAGCTCACTGGCAAAGATGTCGTCTTT 649
Query 656 GAGTTTCCCATCACTGAAGCCTAAGAGATGAAATGAGACGTAGAGAATCTGTTATGATCT 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 650 GAGTTTCCCATCACTGAAGCCTAAGAGATGAACTGAGACGTAGAGAATCTGTTGTGATCT 709
Query 716 CAGATATTTTAA-TCTTCTTTTTCGTCTACTTT 747
||||||||| || ||||||||||| | ||||||
Sbjct 710 CAGATATTT-AAGTCTTCTTTTTCATTTACTTT 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5