BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48850.1
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923232 jgi|Araly1|923232|scaffold_104513.1 2241 0.0
Ahg932461 jgi|Araly1|932461|scaffold_400449.1 132 1e-29
Ahg942719 jgi|Araly1|942719|scaffold_603263.1 122 6e-27
Ahg474021 jgi|Araly1|474021|fgenesh2_kg.1__3975__AT1G48840.1 91.6 2e-17
> Ahg923232 jgi|Araly1|923232|scaffold_104513.1
Length=1348
Score = 2241 bits (1213), Expect = 0.0
Identities = 1297/1338 (97%), Gaps = 3/1338 (0%)
Strand=Plus/Plus
Query 117 TGCCTTGGAATCCTGATCATGGCGTCGTCTTCTCTCACTTCGAAATCCATTCTCGGATCC 176
|||||| ||||||||||||| | | |||||||||| ||||| ||||||||||||||||||
Sbjct 3 TGCCTTTGAATCCTGATCAT-G-G-CGTCTTCTCTTACTTCCAAATCCATTCTCGGATCC 59
Query 177 ACCAAACTCGGttcttcttctcttccctcggagctccgtcgtctctcttctcccgccgtt 236
||||||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 60 ACCAAACCCGGTTCTTCTTCTCTTCCGTCCGAGCTCCGTCGTCTCTCCTCTCCCGCCGTT 119
Query 237 cagatctctctccgtACCCAAACCAGGAAGAACTTCCAGATACAAGCTACTGGAAGTTCA 296
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 CAGATCTCTCTCCGTACCCAAACCAGGAAGAACTTACAGATACAAGCTACTGGAAGTTCT 179
Query 297 TATGGGACTCATTTTCGAGTTTCAACTTTTGGAGAATCACATGGAGGAGGAGTTGGTTGT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TATGGGACTCATTTTCGAGTTTCAACTTTTGGAGAATCACATGGAGGAGGAGTTGGTTGT 239
Query 357 ATCATTGATGGTTGTCCTCCTCGTATTCCACTTACTGAATCTGATTTGCAATTCGATCTC 416
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCATTGATGGTTGTCCTCCTCGGATTCCACTTACTGAATCTGATTTGCAATTCGATCTC 299
Query 417 GATAGAAGGAGGCCTGGTCAGAGCAGGATCACAACTCCTAGAAAAGAGACTGATACTTGC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATAGAAGGAGGCCTGGTCAGAGCAGGATCACAACTCCTAGAAAAGAGACTGATACTTGC 359
Query 477 CGGATATCGTCTGGAGTCTCTGAAGGAATGACGACAGGAACACCTATCCATGTGTTTGTA 536
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGGATATCTTCTGGAGTCTCCGAAGGAATGACGACAGGAACACCTATCCATGTGTTTGTG 419
Query 537 CCAAACACAGATCAGAGAGGACTTGATTACAGTGAAATGTCGGTTGCCTATAGACCATCG 596
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 420 CCAAACACCGATCAGAGAGGACTTGATTACAGTGAAATGTCAGTTGCATATAGACCATCG 479
Query 597 CATGCTGATGCAACTTATGACATGAAGTATGGTGTCAGATCAGTGCAGGGTGGAGGAAGA 656
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATGCTGATGCAACTTATGATATGAAGTATGGTGTCAGATCAGTGCAGGGTGGAGGAAGA 539
Query 657 TCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATTTTG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATTTTG 599
Query 717 AAGCAATTTGCAGGAACTGAGATTCTTGCCTATGTCTCGCAAGTTCACCATGTTGTACTT 776
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 600 AAGCAATTTGCAGGAACTGAGATTCTTGCCTATGTCTCGCAAGTCCACCACGTTGTACTT 659
Query 777 CCAGAAGAATTGGTAGACCACGAGAATTTAACACTCGAACAGATAGAAAATAACATTGTC 836
|||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 660 CCAGAAGATTTGGTAGACCACGACAATTTGACACTGGAACAGATAGAAAACAACATTGTT 719
Query 837 AGATGCCCTAATCCCGAGTATGCGGAAAAGATGATAGCTGCGATTGATGCTGTCAGGACA 896
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 AGATGCCCTAATCCCGAGTATGCAGAAAAGATGATAGCTGCGATTGATGCTGTCAGGACA 779
Query 897 AAAGGGAACTCTGTTGGTGGTGTTGTGACCTGCATTGTTCGGAATGCTCCACGTGGGCTT 956
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 AAAGGGAACTCTGTTGGTGGTGTTGTGACCTGCATTGTTCGAAATGCTCCACGTGGGCTT 839
Query 957 GGTACACCGGTTTTCGATAAACTTGAAGCAGAACTGGCAAAAGCTTGTATGTCGCTACCT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 GGTACACCGGTTTTCGATAAACTTGAAGCAGAACTGGCAAAAGCTTGTATGTCATTACCA 899
Query 1017 GCAACTAAGGGATTTGAGTTTGGAAGCGGCTTTGCAGGTACCTTTTTGACTGGTCTTGAA 1076
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 900 GCAACAAAGGGATTTGAGTTTGGAAGTGGCTTTGCAGGTACCTTTTTAACTGGTCTTGAA 959
Query 1077 CACAATGATGAGTTCTATACCGATGAAAATGGAAGAATACGTACCAGAACCAACCGATCT 1136
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 CACAATGATGAGTTCTATACCGATGAAAATGGAAGAATACGTACCAGAACAAACCGATCT 1019
Query 1137 GGTGGAATTCAGGGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGTGGAATTCAGGGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAG 1079
Query 1197 CCAACATCAACAATTGGAAGGAAGCAAAATACGGTAACCAGAGACAAGGTAGAAACCGAA 1256
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 CCAACATCAACAATTGGAAGGAAGCAGAATACGGTAACCAGAGACAAGGTAGAAACCGAA 1139
Query 1257 ATGATTGCGCGTGGTCGTCATGATCCTTGTGTTGTTCCACGAGCTGTGCCAATGGTGGAA 1316
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATGATTGCGCGTGGCCGTCATGATCCTTGTGTTGTTCCACGAGCTGTGCCAATGGTGGAA 1199
Query 1317 GCAATGGTGGCTCTAGTTCTTGTGGATCAATTGATGGCGCAATACGCACAATGCCATTTG 1376
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GCAATGGTGGCTTTAGTTCTTGTGGATCAATTGATGGCGCAATACGCACAATGCCATTTG 1259
Query 1377 TTTCCAATAAATCCAGAGTTGCAGGAACCTCTCCAGATAGAGCAGCCGCAAAATGCTACT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTTCCAATAAATCCAGAGTTGCAGGAACCTCTCCAGATAGAGCAGCCGCAAAATGCTACT 1319
Query 1437 GCTTTGTAAGCAAATCTC 1454
|||||||||||||| |||
Sbjct 1320 GCTTTGTAAGCAAAACTC 1337
> Ahg932461 jgi|Araly1|932461|scaffold_400449.1
Length=392
Score = 132 bits (71), Expect = 1e-29
Identities = 80/84 (95%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 654 AGATCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATT 713
|||||||| |||||||| |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 291 AGATCTTCTGCTAGAGACACCATTGGAAGAGTTGCTCCTG-AGCTTTGGC-AAGAAAATT 348
Query 714 TTGAAGCAATTTGCAGGAACTGAG 737
||||||||||||||||||||||||
Sbjct 349 TTGAAGCAATTTGCAGGAACTGAG 372
> Ahg942719 jgi|Araly1|942719|scaffold_603263.1
Length=309
Score = 122 bits (66), Expect = 6e-27
Identities = 79/85 (93%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 644 GGGTGGAGGAAGATCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGC 703
||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 199 GGGTGGAGGCAGGTCTTTTGCTAGAGAGACCATTGGAAGAGTTGCTCCTG-AGCTTTGGC 257
Query 704 CAAGAAAATTTTGAAGCAATTTGCA 728
||||||||||||||||||||||||
Sbjct 258 -AAGAAAATTTTGAAGCAATTTGCA 281
> Ahg474021 jgi|Araly1|474021|fgenesh2_kg.1__3975__AT1G48840.1
Length=2402
Score = 91.6 bits (49), Expect = 2e-17
Identities = 97/118 (82%), Gaps = 12/118 (10%)
Strand=Plus/Minus
Query 1577 TTTGCTTCTATATCATTCAGCTAAATGTGATTTTACCACG-AACATAAACTATTTTCTAT 1635
|||||| || ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2402 TTTGCTACTGCATCATTCAGCTAAATGTGATTTTACCACGGAACATAAACTATTT---A- 2347
Query 1636 AAtttt-tt-tGGT-GTAA-AAC-CAAACACTTTTCTACAACATACATGATACATGTA 1688
|| ||| || | | |||| || |||| |||||| ||||||||||||| || |||||
Sbjct 2346 AACTTTATTCTA-TAGTAATAATTCAAAAACTTTTGTACAACATACATG-TAAATGTA 2291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63534528660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5