BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48860.1
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474025 jgi|Araly1|474025|fgenesh2_kg.1__3979__AT1G48860.1 2676 0.0
Ahg483663 jgi|Araly1|483663|fgenesh2_kg.4__2723__AT2G45300.1 2309 0.0
> Ahg474025 jgi|Araly1|474025|fgenesh2_kg.1__3979__AT1G48860.1
Length=1807
Score = 2676 bits (1449), Expect = 0.0
Identities = 1676/1783 (94%), Gaps = 26/1783 (1%)
Strand=Plus/Plus
Query 113 TCTTTTGCCTTGGAATCCTGATCATGGCGTCTTCTCTCACTTCCAAATCCATTCTCGGAT 172
||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 41 TCTTTTGCCTTCGAGTCCTGATCATGGCGTCTTCTCTTACTTCCAAATCCATTCTCGGAT 100
Query 173 GCACCAAACCCGCTTCTTCTTCTTTTCTTCCGTCGGAGCTCCGTCGTCTCTCTTCTCCCG 232
||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 101 CCACCAAACCCGGTTCTTCTTC---TCTTCCCTCGGAGCTCCGTCGTCTCTCCTCTCCCG 157
Query 233 CCGTTCAGATATCTCTCCATTCACAAACCAGGAAGAAC-TTCCG--GC-AG--TCGTGG- 285
|||||||||| ||| ||| | | ||||||||||||||| ||| | | || || |||
Sbjct 158 CCGTTCAGATCTCTATCCGTACCCAAACCAGGAAGAACTTTCAGATACAAGCTTC-TGGA 216
Query 286 GGAT-T--GAAGAAGAGTGATCTGATGCTAAATGGTTCTGAGATTCGTCCTGTGAAGGTT 342
| | | ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 217 AGTTCTGAGAAGAAGAGTGGTATGATGCTAAATGGTTCTGAGATTCGTCCTGTGAAGGTT 276
Query 343 AGGGCTTCTGTTTCCACGGCGGAGAAAGCTTCGGAGATTGTGCTTCAACCCATTAGAGAA 402
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 277 ATGGCTTCTGTTTCCACGGCGGAGAAAGCGTCGGAGATTGTGCTTCAACCCATTAGAGAA 336
Query 403 ATCTCGGGTCTCATTAAGCTTCCTGGCTCCAAGTCTCTCTCTAATCGAATTCTGCTTCTC 462
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 337 ATCTCGGGTCTGATTAAGCTTCCTGGCTCCAAGTCTCTCTCTAATCGGATTCTGCTTCTC 396
Query 463 GCTGCTCTATCTGAGGGAACTACTGTAGTGGACAACTTGTTGAACAGTGATGACATCAAT 522
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 397 GCTGCTCTATCTGAGGGAACTACTCTAGTGGACAACTTGTTGAACAGTGATGACATCAAT 456
Query 523 TACATGCTTGATGCGTTGAAGATATTGGGACTTAATGTGGAAACTCACAGTGAAAACAAT 582
|||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||
Sbjct 457 TACATGCTTGATGCGTTGAAGAAATTGGGGCTTAATGTGGAAACTGATAGTGAAAACAAT 516
Query 583 CGTGCTGTAGTTGAAGGATGTGGCGGGGTATTTCCAGCTTCCATTGATTCCAAGAGTGAT 642
||||| ||||||||||||||||||||| ||| |||||||| || |||||||||||||||
Sbjct 517 CGTGCAGTAGTTGAAGGATGTGGCGGGACATTCCCAGCTTCTATAGATTCCAAGAGTGAT 576
Query 643 ATCGAACTTTACCTCGGCAATGCAGGAACAGCAATGCGTCCACTTACCGCCGCAGTTACT 702
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 577 ATCGAACTTTACCTCGGAAATGCAGGAACCGCAATGCGTCCACTTACCGCTGCAGTTACT 636
Query 703 GCTGCAGGTGGCAACGCAAGTTATGTCCTTGATGGGGTGCCTCGGATGAGAGAGAGACCT 762
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 637 GCTGCAGGTGGCAACGCGAGTTATGTGCTTGATGGGGTGCCTCGGATGAGAGAAAGACCT 696
Query 763 ATAGGGGATTTGGTTGTTGGTCTTAAGCAGCTTGGTGCTGATGTTGAATGTACTCTTGGC 822
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 ATAGGGGATTTGGTTGTTGGTCTTAAGCAGCTTGGTGCTGATGTTGAATGTACTCTTGGA 756
Query 823 ACTAACTGCCCTCCTGTTCGTGTCAACGCTAATGGTGGCCTTCCTGGTGGAAAGGTGAAG 882
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 757 ACTAACTGCCCTCCTGTTCGTGTCAACGCTAATGGTGGCCTTCCCGGTGGAAAGGTGAAG 816
Query 883 CTTTCTGGATCTATTAGTAGTCAGTACTTGACCGCTCTGCTCATGGCAGCTCCCTTAGCT 942
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 817 CTTTCTGGATCAATTAGTAGTCAGTACTTGACTGCTCTGCTCATGGCTGCTCCCTTAGCT 876
Query 943 CTTGGAGACGTCGAAATTGAAATTGTCGATAAATTGATTTCTGTTCCGTATGTTGAAATG 1002
||||||||||| || ||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 877 CTTGGAGACGTTGAGATTGAGATAGTCGATAAATTGATTTCTGTTCCATATGTTGAAATG 936
Query 1003 ACATTGAAGTTGATGGAACGTTTTGGGGTAAGTGCTGAGCATAGTGAAAGCTGGGATCGT 1062
||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct 937 ACATTGAAGTTGATGGAACGTTTCGGGGTTAGTGCCGAGCATAGTGATAGCTGGGATCGT 996
Query 1063 TTCTTTGTTAAGGGTGGGCAAAAATACAAGTCGCCGGGTAATGCTTACGTAGAAGGTGAT 1122
|||||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 997 TTCTTTGTCAAGGGCGGGCAAAAATACAAGTCTCCGGGTAATGCATATGTAGAAGGTGAT 1056
Query 1123 GCTTCTAGTGCTAGTTATTTCCTGGCTGGTGCTGCCATTACCGGTGAAACTGTCACTGTT 1182
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1057 GCTTCTAGTGCTAGTTATTTCTTGGCTGGTGCTGCCATTACCGGTGAGACTGTCACTGTT 1116
Query 1183 GAAGGTTGTGGAACGACCAGTTTGCAGGGAGATGTGAAATTTGCCGAGGTTCTTGAGAAA 1242
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1117 GAAGGTTGTGGAACCACCAGCTTGCAGGGAGATGTGAAATTTGCTGAGGTTCTTGAGAAA 1176
Query 1243 ATGGGATGTAAAGTGTCCTGGACAGAGAACAGTGTGACTGTGACAGGGCCGTCTAGAGAT 1302
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1177 ATGGGATGTAAAGTGTCCTGGACAGAGAACAGTGTGACTGTGACAGGACCATCTAGAGAT 1236
Query 1303 GCTTTTGGAATGAGACACTTGCGGGCTATTGATGTCAACATGAACAAAATGCCTGATGTA 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GCTTTTGGAATGAGACACTTGCGGGCTATTGATGTCAACATGAACAAAATGCCTGATGTA 1296
Query 1363 GCAATGACTCTTGCCGTCGTTGCTCTCTTTGCCGATGGTCCAACCACCATTAGAGATGTG 1422
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1297 GCAATGACTCTTGCCGTCGTTGCTCTCTTTGCTGACGGTCCAACCACCATTAGAGATGTG 1356
Query 1423 GCTAGCTGGAGAGTAAAGGAGACGGAAAGGATGATTGCCATTTGCACAGAGCTTAGAAAA 1482
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1357 GCTAGCTGGAGAGTAAAGGAGACAGAAAGGATGATTGCCATTTGCACAGAGCTTAGAAAA 1416
Query 1483 CTGGGAGCTACAGTGGAAGAAGGTTCAGATTATTGTGTGATTACTCCGCCGAAAAAGGTG 1542
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1417 CTGGGAGCTACAGTGGAAGAAGGTTCAGATTATTGTGTGATAACTCCGCCCAAAAAGGTG 1476
Query 1543 AAACCGGCAGAGATTGATACATATGATGATCATAGAATGGCAATGGCATTCTCTCTTGCA 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 AAACCGGCAGAGATTGATACATATGATGATCATAGAATGGCAATGGCATTCTCTCTTGCA 1536
Query 1603 GCTTGTGCTGATGTTCCAATCACCATCAATGACCCCGGTTGCACCAGGAAAACCTTCCCC 1662
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1537 GCTTGTGCTGATGTTCCAATCACGATCAATGATCCTGGTTGCACCAGGAAAACCTTCCCC 1596
Query 1663 GACTACTTCCAAGTCCTTGAAAGAATCACAAAGCATTAAACaaaaaaaCTCTAAAATCTC 1722
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1597 GACTACTTCCAAGTCCTTGAAAGAATCACAAAGCACTAAACAAAAAA-CTCTAAAATCTC 1655
Query 1723 CACTGTTTTTTCTTCTGATCCAAGCTTATCTGTTTCCATTTTTCTTGTCTCTGTAACATT 1782
||||||| || ||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 1656 CACTGTT----CT---GATCCTAGCTTATCTGTTTCCAATTT-CTTGTCTCTGTAACATT 1707
Query 1783 ATTAGAAAGCAAGAGTAGTGTTTGTTTGTGTGTACCTGAACTGAGTGAGATTTGAGATGC 1842
|||||||| ||||||| || || ||||| |||||||||||||||||||||||||||||||
Sbjct 1708 ATTAGAAACCAAGAGT-GT-TT-GTTTGCGTGTACCTGAACTGAGTGAGATTTGAGATGC 1764
Query 1843 AATCATTGAATCGGCTTTGGTATATCATTTTACTCTGTTTTTC 1885
||| |||||||||| |||||| |||||||||||||||||||||
Sbjct 1765 AATTATTGAATCGGTTTTGGTCTATCATTTTACTCTGTTTTTC 1807
> Ahg483663 jgi|Araly1|483663|fgenesh2_kg.4__2723__AT2G45300.1
Length=1831
Score = 2309 bits (1250), Expect = 0.0
Identities = 1421/1504 (94%), Gaps = 10/1504 (1%)
Strand=Plus/Plus
Query 279 GTCGTGGGGATTGAAGAAGAGTGATCTGATGCTAAATGGTTCTGAGATTCGTCCTGTGAA 338
||||||||||||||||||||||| ||| | ||| |||||||||||||||||| || ||
Sbjct 296 GTCGTGGGGATTGAAGAAGAGTGGGATGACGTTAATTGGTTCTGAGATTCGTCCGGTTAA 355
Query 339 GGTTAGGGCTTCTGTTTCCACGGCGGAGAAAGCTTCGGAGATTGTGCTTCAACCCATTAG 398
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 356 GGTTATGGCTTCTGTTTCCACGGCGGAGAAAGCGTCGGAGATTGTGCTTCAACCCATTAG 415
Query 399 AGAAATCTCGGGTCTCATTAAGCTTCCTGGCTCCAAGTCTCTCTCTAATCGAATTCTGCT 458
|||||| |||||||| |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct 416 AGAAATTTCGGGTCTTATTAAGCTCCCTGGCTCCAAGTCTCTGTCTAATCGGATCCTGCT 475
Query 459 TCTCGCTGCTCTATCTGAGGGAACTACTGTAGTGGACAACTTGTTGAACAGTGATGACAT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCTCGCTGCTCTATCTGAGGGAACTACTGTAGTGGACAACTTGTTGAACAGTGATGACAT 535
Query 519 CAATTACATGCTTGATGCGTTGAAGATATTGGGACTTAATGTGGAAACTCACAGTGAAAA 578
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 536 CAATTACATGCTTGATGCGTTGAAGAGATTGGGACTTAATGTGGAAACTGACAGTGAAAA 595
Query 579 CAATCGTGCTGTAGTTGAAGGATGTGGCGGGGTATTTCCAGCTTCCATTGATTCCAAGAG 638
||||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 596 CAATCGTGCCGTAGTTGAAGGATGTGGCGGCATATTCCCAGCTTCCATTGATTCAAAGAG 655
Query 639 TGATATCGAACTTTACCTCGGCAATGCAGGAACAGCAATGCGTCCACTTACCGCCGCAGT 698
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 656 TGATATCGAACTTTACCTCGGTAATGCAGGAACAGCAATGCGTCCACTTACCGCTGCGGT 715
Query 699 TACTGCTGCAGGTGGCAACGCAAGTTATGTCCTTGATGGGGTGCCTCGGATGAGAGAGAG 758
||||||||||||||| || || |||||||| |||||||||||||||||||||||||| ||
Sbjct 716 TACTGCTGCAGGTGGAAATGCGAGTTATGTGCTTGATGGGGTGCCTCGGATGAGAGAAAG 775
Query 759 ACCTATAGGGGATTTGGTTGTTGGTCTTAAGCAGCTTGGTGCTGATGTTGAATGTACTCT 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ACCTATAGGGGATTTGGTTGTTGGTCTTAAGCAGCTTGGTGCTGATGTTGAATGTACTCT 835
Query 819 TGGCACTAACTGCCCTCCTGTTCGTGTCAACGCTAATGGTGGCCTTCCTGGTGGAAAGGT 878
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGGAACTAACTGCCCTCCTGTTCGTGTCAACGCTAATGGTGGCCTTCCTGGTGGAAAGGT 895
Query 879 GAAGCTTTCTGGATCTATTAGTAGTCAGTACTTGACCGCTCTGCTCATGGCAGCTCCCTT 938
||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 896 GAAGCTTTCTGGATCAATTAGTAGTCAGTACTTGACTGCTTTGCTCATGGCAGCTCCCTT 955
Query 939 AGCTCTTGGAGACGTCGAAATTGAAATTGTCGATAAATTGATTTCTGTTCCGTATGTTGA 998
|||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 956 AGCTCTTGGAGACGTCGAGATTGAGATAGTCGATAAATTGATTTCTGTTCCATATGTTGA 1015
Query 999 AATGACATTGAAGTTGATGGAACGTTTTGGGGTAAGTGCTGAGCATAGTGAAAGCTGGGA 1058
||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||
Sbjct 1016 AATGACATTGAAGTTGATGGAACGTTTTGGGGTTAGTACCGAGCATAGTGATAGCTGGGA 1075
Query 1059 TCGTTTCTTTGTTAAGGGTGGGCAAAAATACAAGTCGCCGGGTAATGCTTACGTAGAAGG 1118
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1076 CCGTTTCTTTGTTAAGGGCGGGCAAAAATACAAGTCGCCTGGTAATGCGTACGTAGAAGG 1135
Query 1119 TGATGCTTCTAGTGCTAGTTATTTCCTGGCTGGTGCTGCCATTACCGGTGAAACTGTCAC 1178
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1136 TGATGCTTCTAGTGCTAGTTATTTCTTGGCTGGTGCTGCCATTACCGGTGAAACTGTCAC 1195
Query 1179 TGTTGAAGGTTGTGGAACGACCAGTTTGCAGGGAGATGTGAAATTTGCCGAGGTTCTTGA 1238
|||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||
Sbjct 1196 TGTTGAAGGTTGTGGAACTACCAGCTTGCAGGGAGATGTAAAATTCGCCGAGGTCCTTGA 1255
Query 1239 GAAAATGGGATGTAAAGTGTCCTGGACAGAGAACAGTGTGACTGTGACAGGGCCGTCTAG 1298
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1256 GAAAATGGGATGTAAAGTGTCCTGGACAGAGAACAGTGTGACTGTGACAGGACCACCTAG 1315
Query 1299 AGATGCTTTTGGAATGAGACACTTGCGGGCTATTGATGTCAACATGAACAAAATGCCTGA 1358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1316 AGATGCTTTTGGAATGAGACACTTGCGCGCTATTGATGTCAACATGAACAAAATGCCTGA 1375
Query 1359 TGTAGCAATGACTCTTGCCGTCGTTGCTCTCTTTGCCGATGGTCCAACCACCATTAGAGA 1418
|||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1376 TGTAGCCATGACTCTTGCCGTCGTTGCTCTCTTTGCTGACGGTCCAACTACCATTAGAGA 1435
Query 1419 TGTGGCTAGCTGGAGAGTAAAGGAGACGGAAAGGATGATTGCCATTTGCACAGAGCTTAG 1478
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1436 TGTGGCTAGCTGGAGAGTAAAGGAGACAGAAAGGATGATTGCCATTTGCACAGAGCTTAG 1495
Query 1479 AAAACTGGGAGCTACAGTGGAAGAAGGTTCAGATTATTGTGTGATTACTCCGCCGAAAAA 1538
||| ||||||||||||||||||||||||||||||||||||||||| || || || |||||
Sbjct 1496 AAAGCTGGGAGCTACAGTGGAAGAAGGTTCAGATTATTGTGTGATAACACCACCAAAAAA 1555
Query 1539 GGTGAAACCGGCAGAGATTGATACATATGATGATCATAGAATGGCAATGGCATTCTCTCT 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GGTGAAACCGGCAGAGATTGATACATATGATGATCATAGAATGGCAATGGCATTCTCTCT 1615
Query 1599 TGCAGCTTGTGCTGATGTTCCAATCACCATCAATGACCCCGGTTGCACCAGGAAAACCTT 1658
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1616 TGCAGCTTGTGCTGATGTTCCAATCACCATCAATGATCCCGGTTGCACCAGGAAAACCTT 1675
Query 1659 CCCCGACTACTTCCAAGTCCTTGAAAGAATCACAAAGCATTAAACaaaaaaaCTCTAAAA 1718
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1676 CCCCGACTACTTCCAAGTCCTTGAAAGAATCACAAAGCACTAAACAAAAAA-CT-T---- 1729
Query 1719 TCTCCACTGTTTTTTCTTCTGATCCAAGCTTATCTGTTTCCATTTTTCTTGTCTCTGTAA 1778
|| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1730 -CTG---TGTTTTTTTTTCTGATCCAAGCTTATCTGTTTCCATATTTCTTGCCTCTGTAA 1785
Query 1779 CATT 1782
||||
Sbjct 1786 CATT 1789
Score = 63.9 bits (34), Expect = 4e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1807 TTTGTGTGTACCTGAACTGAGTGAGATTTGAGATGCAATCATT 1849
|||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 1789 TTTGCGTGTAACTGAACTGAGTGAGATTTGAGATGCAATTATT 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70847855700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5