BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48870.1
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337011 jgi|Araly1|337011|fgenesh1_pg.C_scaffold_1003576 1147 0.0
> Ahg337011 jgi|Araly1|337011|fgenesh1_pg.C_scaffold_1003576
Length=1710
Score = 1147 bits (621), Expect = 0.0
Identities = 833/933 (89%), Gaps = 24/933 (3%)
Strand=Plus/Plus
Query 853 TTGCTTCTTTCAGCTTCTAAAGACAAGACAGTTCGGTTATGGAGAACTGGTTGTGATCAA 912
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 799 TTGCTTCTTTCAGCTTCTAAAGACAAGACAGCCCGGTTATGGAGAATTGGTTGTGATCAA 858
Query 913 TGTCTTCATGTCTTCCATCATAACAACTACGTGACTTGCGTTGAATTCAATCCTGTAAAT 972
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 859 TGTCTTCATGTCTTCCATCATAACAACTATGTGACTTGCGTTGAATTCAATCCTGTGAAT 918
Query 973 AAGAACAACTTCGCAAGTGGGTCTATAGATGGAAAAGCTCGAATCTGGGGTTTGTCAGAA 1032
|||||||||||| |||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 919 AAGAACAACTTCTTAAGTGGATCTATCGATGGAAAAGCTCGAATCTGGGGTTTATCGGAA 978
Query 1033 GAAAGAGTTGTCGCTTGGACCGATGTTCGTGATTCCATTTCTGCAATCTCTTACCAACCA 1092
|| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 979 GAGAGAGTCGTCGCGTGGACCGATGTTCGTGATTCCATTTCTGCAATCTGTTACCAACCA 1038
Query 1093 AACGGAAATGGGTTTGTTGTTGGTTGCATCACTGGGAACTGTAGGTTCTATCAAATCTTA 1152
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1039 AATGGAAATGGGTTTGTCGTTGGTTGCATCACTGGGAACTGTAGGTTCTATCAAATCTCA 1098
Query 1153 GATAACGATGTGATAATGGATGAACAGATTCTTATCCGGGGAAGGAATAGA-ATCACCGC 1211
| ||||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||
Sbjct 1099 GGTAACGATGTGATAATGGATGAGCAGATTCTTATCCGGGGACGGAATA-ACATCACCGC 1157
Query 1212 CGTGGAGTTTTGTCCTGGAAGCTCCGAGAAAATTTTAGTATCTTCTGAAGATTCGAAAGT 1271
|||||||||||||||||||||||| |||||| || | |||||||| || || ||||||||
Sbjct 1158 CGTGGAGTTTTGTCCTGGAAGCTCGGAGAAACTTATGGTATCTTCCGACGAGTCGAAAGT 1217
Query 1272 TCGAATATTTGACAAAACACAAATGATTCACAAATTCAAAGCTCCATCGAATTTTGGGAG 1331
|||||||||| | ||||||||||| |||||||||| |||||||||||||| | |||||
Sbjct 1218 TCGAATATTTAATAAAACACAAATCTTTCACAAATTTAAAGCTCCATCGAAATATGGGAA 1277
Query 1332 ACAATCGTCGGCGTCGTTTGTTTCTTCCACCGGAAAACATATTTTATCAGTTAGACGAGG 1391
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1278 ACAATCGTCGGCGTCGTTTGTTTCTTCCACCGGAAAACATATTTTATCAGTCCGACGAGG 1337
Query 1392 TGTCGGAGTTTATCTCTGGAACAACGATGCGTTT-CCTTCGAGGAAAGGCGCAAAATCGT 1450
| ||||||||||||| ||||||||||||| |||| || |||||||||||||| |||||||
Sbjct 1338 TCTCGGAGTTTATCTTTGGAACAACGATG-GTTTTCCGTCGAGGAAAGGCGCGAAATCGT 1396
Query 1451 CGCGTTCTTTCGAGTATTTTCATTCGCCGGGGGTTTCCGCGGTGGCGGCTTGGACTCAAC 1510
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 1397 CGCGTTCTTTCGAGTATTTTCATTCGCCGGGTGTTTCCGCGGCGGCGGCTTGGACTCCAC 1456
Query 1511 CGGAAACAAAAGTGTCGAAAGTAGCCGGTGATGATGAAGAATCACGGCGCGTTATGAGAA 1570
||| | ||||||| |||||| ||||| |||||||||||||||||||| ||| |||||
Sbjct 1457 CGGGAGCAAAAGTATCGAAAACGGCCGGAGATGATGAAGAATCACGGCGAGTTCTGAGAC 1516
Query 1571 AAATACAGAGCTCTGGGAGATTGTCTCGCTCCTGTCGTGTTACCGCCACGTGGCCGGAGG 1630
||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 1517 AAATACAGAGCTCCGGGAAATTGTCTCGTTCCTGCCGTGTTACCGCCACGTGGCCGGTGG 1576
Query 1631 AGAAGCTCCTTATGAATGTAGGAAGTTACGATAGTAACCTTCCCGTCGGCGAGTT-TGAT 1689
|||| ||||| |||| |||| | | | ||| || || | ||| | | |
Sbjct 1577 AGAAACTCCTGATGA--GTAGTTC-TGATG-TAGGAA--TT----TA--CGA-TAAT-AC 1622
Query 1690 CTTGCCGAGGCGTGGAGACTGGTGATCGTGACCGTGAGCTTGGATGGGATGATTAGGACA 1749
| | || |||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1623 CCT-CC----CGTGGAGACTGGTGATCGTGACGGCGAGCTTGGATGGGATGATTAGGACA 1677
Query 1750 TTCCATAACTATGGACTGCCACGTACATTTTAG 1782
||||||||||||||||||||||||| ||| |||
Sbjct 1678 TTCCATAACTATGGACTGCCACGTAGATTGTAG 1710
Score = 998 bits (540), Expect = 0.0
Identities = 734/821 (89%), Gaps = 39/821 (5%)
Strand=Plus/Plus
Query 4 ATGAGTGTGGGAAGAAGTGAAGTTGTTGTTGATGATTTGTTCTTTGATTCATCTGATGTT 63
|||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAGTGTTGAAAGAAGTGAA---GTTGTTGATGATGTGTTCTTTGATTCATCTGATGTT 57
Query 64 TTGTCTATTGGTGAACaagtagtagtagaagaagaagaagtagaagaagCAGAGTTTCAA 123
|||||||||||||||| | |||| | ||||||||| | |||||||||||||||||||
Sbjct 58 TTGTCTATTGGTGAAC-A--AGTA--A-AAGAAGAAG-A--AGAAGAAGCAGAGTTTCAA 108
Query 124 GTTTGGTCTGGTGAGCCAATTAGTGTTGAGGAACGTCGTGTACGGTTTCTCAAGAAAATG 183
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 109 ATTTGGTCTGGTGAGCCAGTTAGTGTTGAGGAACGTCGTGTACGGTTTCTCAAGAAAATG 168
Query 184 GGTTTATTAG-A-AGAGA---G-G----TG--TCTGGAGAGGATGGTAAGCGATTACAGT 231
|||||||||| | ||||| | | || | ||||||||||| |||| ||||||||
Sbjct 169 GGTTTATTAGAAGAGAGATTTGAGTCTATGTATTTGGAGAGGATGATAAGTGATTACAGC 228
Query 232 GATGAGG-T--TACTAGTTCTTCTTCAGATTCATCTCTCTGTGATAGTGGATTGCAGTGT 288
||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 229 GATGAGGTTACTACTAGTTCTTCTTCAGATTCATATCTCTGTGATAGTGAATTGCAGTGT 288
Query 289 TGTGTTAGAGAGGAGAACTATGGATCAACTACTTCAATCTCTGATGAGGAACTAGAAGGA 348
||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 289 TGTGTTAGAGAGGAGAATTATGGATCAACCACTTCGATGTCTGATGAGGAACTAGAAGGA 348
Query 349 GTGgatgatgatgatgatgatTCAGAAGAAATCTCAAGTAATGCTTCCACCAGTCCATCG 408
|| | ||||||||||| |||||||||| ||||| ||| || | ||||||||
Sbjct 349 ---GA-G--GATGATGATGAGTCAGAAGAAAACTCAACCGATGTTTGTTCGAGTCCATCA 402
Query 409 CGGAGTTCCAGCAAGAAAAGCGCGAAAAAATGGTTGTTCAATTGCTTTTCAGCAGGAGTG 468
||||||| |||||||||||||||||| |||||||| ||||||||| ||| | |||||||
Sbjct 403 CGGAGTTTCAGCAAGAAAAGCGCGAAGAAATGGTTTTTCAATTGC-TTT--GTAGGAGTG 459
Query 469 AAGGATAAAGATTTCAAATACAAATCAAGTGAAGAGACAATGAGCAAAGTGAAAGTGAAG 528
|||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 460 AAGGATAAAGATTTCAAATACAAATCAAGTGAAGCGACGATGAGTAAAGTGAAAGTGAAG 519
Query 529 ACTAACAAGAAGAGTCATGTAGAGTTATCTGCAGCTTACATGGTACAAAAGATTAATGGA 588
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ACTAATAAGAAGAGTCATGTAGAGTTATCTGCAGCTTACATGGTACAAAAGATTAATGGA 579
Query 589 CACAAAGGGAAAATTTGGACATTAAAGTTTAGTCCTGATGGTAAATACTTAGCAACCGGA 648
|||||||||||||||||| ||| |||||||||||||||||||| | |||||||||||||
Sbjct 580 CACAAAGGGAAAATTTGGGTATTGAAGTTTAGTCCTGATGGTAAGTTCTTAGCAACCGGA 639
Query 649 GGCGAAGATGGAGTTGTAAAGATATGGCGAATCACGCTATCGGATTCTCTACTCGCCTCT 708
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 640 GGTGAAGATGGAGTTGTAAAGATATGGCGAATCACGCTATCGGATTCTTTACTCTCCTCT 699
Query 709 TTTCTTCGACAACAAGAACCAA-TAAACCAACAAGCAGCATTGGTTCTGTTTCCTCAGAA 767
||| | |||||||||||||||| ||| |||||||| |||||||||| | |||||||||||
Sbjct 700 TTTATGCGACAACAAGAACCAAATAA-CCAACAAGAAGCATTGGTTATCTTTCCTCAGAA 758
Query 768 AGCTTTTCATATCGAAGAAACACCGTTTCAAGAACTTTATG 808
|||||||||||| |||||| |||||||||||||||||||||
Sbjct 759 AGCTTTTCATATTGAAGAA-CACCGTTTCAAGAACTTTATG 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5