BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48870.1 Length=1782 Score E Sequences producing significant alignments: (Bits) Value Ahg337011 jgi|Araly1|337011|fgenesh1_pg.C_scaffold_1003576 1147 0.0 > Ahg337011 jgi|Araly1|337011|fgenesh1_pg.C_scaffold_1003576 Length=1710 Score = 1147 bits (621), Expect = 0.0 Identities = 833/933 (89%), Gaps = 24/933 (3%) Strand=Plus/Plus Query 853 TTGCTTCTTTCAGCTTCTAAAGACAAGACAGTTCGGTTATGGAGAACTGGTTGTGATCAA 912 ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 799 TTGCTTCTTTCAGCTTCTAAAGACAAGACAGCCCGGTTATGGAGAATTGGTTGTGATCAA 858 Query 913 TGTCTTCATGTCTTCCATCATAACAACTACGTGACTTGCGTTGAATTCAATCCTGTAAAT 972 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 859 TGTCTTCATGTCTTCCATCATAACAACTATGTGACTTGCGTTGAATTCAATCCTGTGAAT 918 Query 973 AAGAACAACTTCGCAAGTGGGTCTATAGATGGAAAAGCTCGAATCTGGGGTTTGTCAGAA 1032 |||||||||||| |||||| ||||| |||||||||||||||||||||||||| || ||| Sbjct 919 AAGAACAACTTCTTAAGTGGATCTATCGATGGAAAAGCTCGAATCTGGGGTTTATCGGAA 978 Query 1033 GAAAGAGTTGTCGCTTGGACCGATGTTCGTGATTCCATTTCTGCAATCTCTTACCAACCA 1092 || ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 979 GAGAGAGTCGTCGCGTGGACCGATGTTCGTGATTCCATTTCTGCAATCTGTTACCAACCA 1038 Query 1093 AACGGAAATGGGTTTGTTGTTGGTTGCATCACTGGGAACTGTAGGTTCTATCAAATCTTA 1152 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1039 AATGGAAATGGGTTTGTCGTTGGTTGCATCACTGGGAACTGTAGGTTCTATCAAATCTCA 1098 Query 1153 GATAACGATGTGATAATGGATGAACAGATTCTTATCCGGGGAAGGAATAGA-ATCACCGC 1211 | ||||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| Sbjct 1099 GGTAACGATGTGATAATGGATGAGCAGATTCTTATCCGGGGACGGAATA-ACATCACCGC 1157 Query 1212 CGTGGAGTTTTGTCCTGGAAGCTCCGAGAAAATTTTAGTATCTTCTGAAGATTCGAAAGT 1271 |||||||||||||||||||||||| |||||| || | |||||||| || || |||||||| Sbjct 1158 CGTGGAGTTTTGTCCTGGAAGCTCGGAGAAACTTATGGTATCTTCCGACGAGTCGAAAGT 1217 Query 1272 TCGAATATTTGACAAAACACAAATGATTCACAAATTCAAAGCTCCATCGAATTTTGGGAG 1331 |||||||||| | ||||||||||| |||||||||| |||||||||||||| | ||||| Sbjct 1218 TCGAATATTTAATAAAACACAAATCTTTCACAAATTTAAAGCTCCATCGAAATATGGGAA 1277 Query 1332 ACAATCGTCGGCGTCGTTTGTTTCTTCCACCGGAAAACATATTTTATCAGTTAGACGAGG 1391 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1278 ACAATCGTCGGCGTCGTTTGTTTCTTCCACCGGAAAACATATTTTATCAGTCCGACGAGG 1337 Query 1392 TGTCGGAGTTTATCTCTGGAACAACGATGCGTTT-CCTTCGAGGAAAGGCGCAAAATCGT 1450 | ||||||||||||| ||||||||||||| |||| || |||||||||||||| ||||||| Sbjct 1338 TCTCGGAGTTTATCTTTGGAACAACGATG-GTTTTCCGTCGAGGAAAGGCGCGAAATCGT 1396 Query 1451 CGCGTTCTTTCGAGTATTTTCATTCGCCGGGGGTTTCCGCGGTGGCGGCTTGGACTCAAC 1510 ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || Sbjct 1397 CGCGTTCTTTCGAGTATTTTCATTCGCCGGGTGTTTCCGCGGCGGCGGCTTGGACTCCAC 1456 Query 1511 CGGAAACAAAAGTGTCGAAAGTAGCCGGTGATGATGAAGAATCACGGCGCGTTATGAGAA 1570 ||| | ||||||| |||||| ||||| |||||||||||||||||||| ||| ||||| Sbjct 1457 CGGGAGCAAAAGTATCGAAAACGGCCGGAGATGATGAAGAATCACGGCGAGTTCTGAGAC 1516 Query 1571 AAATACAGAGCTCTGGGAGATTGTCTCGCTCCTGTCGTGTTACCGCCACGTGGCCGGAGG 1630 ||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||| || Sbjct 1517 AAATACAGAGCTCCGGGAAATTGTCTCGTTCCTGCCGTGTTACCGCCACGTGGCCGGTGG 1576 Query 1631 AGAAGCTCCTTATGAATGTAGGAAGTTACGATAGTAACCTTCCCGTCGGCGAGTT-TGAT 1689 |||| ||||| |||| |||| | | | ||| || || | ||| | | | Sbjct 1577 AGAAACTCCTGATGA--GTAGTTC-TGATG-TAGGAA--TT----TA--CGA-TAAT-AC 1622 Query 1690 CTTGCCGAGGCGTGGAGACTGGTGATCGTGACCGTGAGCTTGGATGGGATGATTAGGACA 1749 | | || |||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1623 CCT-CC----CGTGGAGACTGGTGATCGTGACGGCGAGCTTGGATGGGATGATTAGGACA 1677 Query 1750 TTCCATAACTATGGACTGCCACGTACATTTTAG 1782 ||||||||||||||||||||||||| ||| ||| Sbjct 1678 TTCCATAACTATGGACTGCCACGTAGATTGTAG 1710 Score = 998 bits (540), Expect = 0.0 Identities = 734/821 (89%), Gaps = 39/821 (5%) Strand=Plus/Plus Query 4 ATGAGTGTGGGAAGAAGTGAAGTTGTTGTTGATGATTTGTTCTTTGATTCATCTGATGTT 63 |||||||| | |||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGAGTGTTGAAAGAAGTGAA---GTTGTTGATGATGTGTTCTTTGATTCATCTGATGTT 57 Query 64 TTGTCTATTGGTGAACaagtagtagtagaagaagaagaagtagaagaagCAGAGTTTCAA 123 |||||||||||||||| | |||| | ||||||||| | ||||||||||||||||||| Sbjct 58 TTGTCTATTGGTGAAC-A--AGTA--A-AAGAAGAAG-A--AGAAGAAGCAGAGTTTCAA 108 Query 124 GTTTGGTCTGGTGAGCCAATTAGTGTTGAGGAACGTCGTGTACGGTTTCTCAAGAAAATG 183 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 109 ATTTGGTCTGGTGAGCCAGTTAGTGTTGAGGAACGTCGTGTACGGTTTCTCAAGAAAATG 168 Query 184 GGTTTATTAG-A-AGAGA---G-G----TG--TCTGGAGAGGATGGTAAGCGATTACAGT 231 |||||||||| | ||||| | | || | ||||||||||| |||| |||||||| Sbjct 169 GGTTTATTAGAAGAGAGATTTGAGTCTATGTATTTGGAGAGGATGATAAGTGATTACAGC 228 Query 232 GATGAGG-T--TACTAGTTCTTCTTCAGATTCATCTCTCTGTGATAGTGGATTGCAGTGT 288 ||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 229 GATGAGGTTACTACTAGTTCTTCTTCAGATTCATATCTCTGTGATAGTGAATTGCAGTGT 288 Query 289 TGTGTTAGAGAGGAGAACTATGGATCAACTACTTCAATCTCTGATGAGGAACTAGAAGGA 348 ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||| Sbjct 289 TGTGTTAGAGAGGAGAATTATGGATCAACCACTTCGATGTCTGATGAGGAACTAGAAGGA 348 Query 349 GTGgatgatgatgatgatgatTCAGAAGAAATCTCAAGTAATGCTTCCACCAGTCCATCG 408 || | ||||||||||| |||||||||| ||||| ||| || | |||||||| Sbjct 349 ---GA-G--GATGATGATGAGTCAGAAGAAAACTCAACCGATGTTTGTTCGAGTCCATCA 402 Query 409 CGGAGTTCCAGCAAGAAAAGCGCGAAAAAATGGTTGTTCAATTGCTTTTCAGCAGGAGTG 468 ||||||| |||||||||||||||||| |||||||| ||||||||| ||| | ||||||| Sbjct 403 CGGAGTTTCAGCAAGAAAAGCGCGAAGAAATGGTTTTTCAATTGC-TTT--GTAGGAGTG 459 Query 469 AAGGATAAAGATTTCAAATACAAATCAAGTGAAGAGACAATGAGCAAAGTGAAAGTGAAG 528 |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| Sbjct 460 AAGGATAAAGATTTCAAATACAAATCAAGTGAAGCGACGATGAGTAAAGTGAAAGTGAAG 519 Query 529 ACTAACAAGAAGAGTCATGTAGAGTTATCTGCAGCTTACATGGTACAAAAGATTAATGGA 588 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 ACTAATAAGAAGAGTCATGTAGAGTTATCTGCAGCTTACATGGTACAAAAGATTAATGGA 579 Query 589 CACAAAGGGAAAATTTGGACATTAAAGTTTAGTCCTGATGGTAAATACTTAGCAACCGGA 648 |||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||| Sbjct 580 CACAAAGGGAAAATTTGGGTATTGAAGTTTAGTCCTGATGGTAAGTTCTTAGCAACCGGA 639 Query 649 GGCGAAGATGGAGTTGTAAAGATATGGCGAATCACGCTATCGGATTCTCTACTCGCCTCT 708 || ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 640 GGTGAAGATGGAGTTGTAAAGATATGGCGAATCACGCTATCGGATTCTTTACTCTCCTCT 699 Query 709 TTTCTTCGACAACAAGAACCAA-TAAACCAACAAGCAGCATTGGTTCTGTTTCCTCAGAA 767 ||| | |||||||||||||||| ||| |||||||| |||||||||| | ||||||||||| Sbjct 700 TTTATGCGACAACAAGAACCAAATAA-CCAACAAGAAGCATTGGTTATCTTTCCTCAGAA 758 Query 768 AGCTTTTCATATCGAAGAAACACCGTTTCAAGAACTTTATG 808 |||||||||||| |||||| ||||||||||||||||||||| Sbjct 759 AGCTTTTCATATTGAAGAA-CACCGTTTCAAGAACTTTATG 798 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66886470220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5