BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48880.1
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474028 jgi|Araly1|474028|fgenesh2_kg.1__3982__AT1G48880.1 2324 0.0
> Ahg474028 jgi|Araly1|474028|fgenesh2_kg.1__3982__AT1G48880.1
Length=1506
Score = 2324 bits (1258), Expect = 0.0
Identities = 1431/1514 (95%), Gaps = 13/1514 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAATTTCACCAAGAGTTCATCATTCAATAGAAGGGCATTGAGTTCCTTAGCTATA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTAATTTCACAAAGAGTTCATCATTCAATAGAAGGGCATTGAGTTCCTTAGCTATA 60
Query 61 GAAAGCCCTAGGAACTCATCTTCTAGTGTCTTCACTAGTCCCATTGGCTCAGCTTTCGCT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAAGCCCTAGGAACTCTTCTTCTAGTGTCTTCACTAGTCCCATTGGCTCAGCTTTCGCT 120
Query 121 AGCCCGAGATCACAGAACTTTGGAGGAAGTCCACGCCCTTCTACGAACCGGTTAAAAGAG 180
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 121 AGCCCGAGATCACAGAACTTTGGAGGAAGTCCACGCCCGTCTACTAATCGGTTAAAAGAG 180
Query 181 ATCTCATATTTGTTTCAGGTGCTTATCATCGCTGGAACTATTGTGTCGTTTCTTGTTATC 240
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 ATCTCATATTTGTTTCAGGTGCTTATTATCGCCGGAACTATTGTGTCGTTTCTTGTTATC 240
Query 241 ATCGCTGGAGGTTATTTGTATGTTGTTCCTAGCCTTGGTCAAACGTTCTTAGGTTACAAT 300
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 241 ATCGCTGGGGGTTATTTGTATGTTGTTCCTAGCCTCGGTCAAACGTTCTTGGGTTACAAT 300
Query 301 GGGGCATTGGAGTTTAACAGCTCTGTTGTGGGTGATACA-GAATGTGATATCTTCGATGG 359
||| ||||||||||||| ||||| |||| |||||||| | ||||||||||| ||||||||
Sbjct 301 GGGACATTGGAGTTTAATAGCTCCGTTGCGGGTGATA-AGGAATGTGATATATTCGATGG 359
Query 360 GAATTGGGTTGTTGACGATAACTACCCGTTATATAACGCTTCGGAGTGTCCATTTGTAGA 419
||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 360 GAATTGGGTCGTTGATGATAACTACCCATTGTATAACGCTTCGGAGTGTCCATTTGTAGA 419
Query 420 GAAAGGGTTCAATTGCTTAGGGAATGGGCGTGGACACGATGAGTATTTGAAGTGGAGGTG 479
|||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 420 GAAAGGATTTAATTGCTTAGGGAACGGGCGTGGACACGATGAGTATTTAAAGTGGAGGTG 479
Query 480 GAAGCCTAAGCATTGTACTGTTCCAAGATTTGAAGTACGTGATGTATTGAAGAGATTAAG 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 GAAGCCTAAGCATTGTACTGTTCCAAGATTTGAAGTACGTGATGTATTGGAGAGATTAAG 539
Query 540 AGGGAAAAGGATAGTTTTTGTGGGAGATTCGATGAGTAGGACGCAGTGGGAGTCTTTGAT 599
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AGGTAAAAGGATAGTTTTTGTGGGAGATTCGATGAGTAGAACGCAGTGGGAGTCTTTGAT 599
Query 600 ATGCATGTTGATGACAGGGTTGGAAGATAAAAGGAGTGTTTATGAAGTCAATGGGAACAA 659
||| ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 600 ATGTATGTTAATGACAGGGTTGAAAGATAAAAGAAGTGTTTATGAAGTCAATGGGAACAA 659
Query 660 TATTACGAAAAGGATACGGTTTTTGGGTGTGAGGTTTAGCTCCTACAATTTTACAGTTGA 719
||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 660 TATAACGAAAAGGATACGGTTTTTGGGTGTGAGGTTTAGTTCCTTTAATTTTACAGTTGA 719
Query 720 GTTTTACCGATCGGTTTTCTTAGTTCAGCCTGGGAGGCTGCGTTGGCACGCACCGAAACG 779
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 GTTCTACCGATCGGTTTTCTTAGTTCAGCCTGGGAGGCTGCGTTGGCACGCACCAAAACG 779
Query 780 TGTTAAGTCAACGTTAAAGTTAGATGTTTTAGATGTTATTAACCACGAATGGAGCTCAGC 839
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 TGTAAAGTCAACGTTAAAGTTAGACGTTTTAGATGTTATTAACCACGAATGGAGCTCAGC 839
Query 840 TGATTTTCTCATATTCAATACTGGTCAATGGTGGGTGCCTGGGAAGCTTTTCGAAACGGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 840 TGATTTTCTCATATTCAATACTGGTCAATGGTGGGTGCCTGGGAAGCTTTTTGCAACGAG 899
Query 900 ATGTTACTTTCAGGTTGGAAATTCACTGAGGCTCGGAATGTCAATTCCTGCAGCGTATAG 959
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 900 TTGTTACTTTCAGGTTGGAAATTCATTGAGGCTCGGAATGTCAATTTCTGCAGCGTATAG 959
Query 960 AGTAGCATTAGAGACATGGGCATCATGGATAGAGAGTAC-AGTTGATCCAAACAAAACTC 1018
||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| |
Sbjct 960 AGTAGCATTAGAGACATGGGCATCATGGATAGAGAATACTA-TTGATCCAAACAAAACCC 1018
Query 1019 GGGTTTTGTTTCGTACATTTGAGCCATCGCATTGGAGTGATCATAGATCATGCAATGTGA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGGTTTTGTTTCGTACATTTGAGCCATCGCATTGGAGTGATCATAGATCATGCAATGTGA 1078
Query 1079 CAAAGTATCCAGCCCCAGACACTGAAGGAAGAGACAAAAGCATATTCTCTGAAATGATCA 1138
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAAAGTATCCAGCCCCGGATACTGAAGGAAGAGACAAAAGCATATTCTCTGAAATGATCA 1138
Query 1139 AAGAAGTAGTTAAGAACATGACGATTCCGGTATCAATATTGGATGTAACTTCGATGTCAG 1198
|| ||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1139 AACAAGTAGTGAAGAATATGACAATTCCAGTATCAATATTGGATGTAACTTCGATGTCAG 1198
Query 1199 CGTTTAGAAGCGATGGTCATGTCGGTTTATGGAGCGATAATCCTTTGGTACCTGATTGTA 1258
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1199 CGTTTAGAAGCGATGGTCATGTTGGTTTATGGAGTGATAATCCTTTGGTTCCTGATTGTA 1258
Query 1259 GTCATTGGTGTCTACCTGGAGTACCTGATATCTGGAATGAGATCTTGCTCTTCTTCCTC- 1317
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1259 GTCATTGGTGTCTACCTGGACTACCTGATATCTGGAATGAGATCTTGCTCTTTTTCCTCC 1318
Query 1318 T-T-TAGACAACCAGTTCAGTGAAGTGGATAATTGCAACATAGaaaaaaaGATTAACGAC 1375
| | ||||||| ||||||| || |||||||||||| ||||||||||| ||||||||||
Sbjct 1319 TCTCTAGACAA---GTTCAGTAAAATGGATAATTGCAGCATAGAAAAAA-GATTAACGAC 1374
Query 1376 CCTTGAAGACTGAATCTCTCGGAGCTAATTGTTCATGTTTCTTCTGAGAGCTAAAGACAG 1435
||| |||| |||||||||||||||||||||| |||| ||| ||||| |||||||||||||
Sbjct 1375 CCTCGAAGTCTGAATCTCTCGGAGCTAATTGCTCATATTTATTCTGGGAGCTAAAGACAG 1434
Query 1436 ATAAAGGGGTCACAAATTTTTGGTGAAAGTTAAAAATGATTCTTACTTAATTCATTCTTT 1495
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1435 ATAAAGGGGTC-CAAATATT-GGTGAAAGTTAAAAATGATTCTTACTTAATTCATTCTTT 1492
Query 1496 TATTGTTTCTTCTA 1509
|||| ||||||||
Sbjct 1493 TATTACTTCTTCTA 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5