BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48910.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314320 jgi|Araly1|314320|fgenesh1_pm.C_scaffold_1003100 1783 0.0
> Ahg314320 jgi|Araly1|314320|fgenesh1_pm.C_scaffold_1003100
Length=1149
Score = 1783 bits (965), Expect = 0.0
Identities = 1085/1145 (95%), Gaps = 0/1145 (0%)
Strand=Plus/Plus
Query 1 ATGGAGACCGTAGTGGTGATTGTGGGAGCTGGACCGGCCGGTTTAGCAACATCGGTTTGT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGACAGTAGTGGTGATTGTGGGAGCTGGACCGGCCGGTTTAGCAACATCCGTTTGT 60
Query 61 CTAAACCAACACTCAATCCCAAACGTGATCCTCGAGAAAGAAGACATCTATGCATCCCTT 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 61 CTAAACCAACACTCAATCCCAAACGTGATTCTCGAGAAAGAAGACATCTATGCATCACTT 120
Query 121 TGGAAGAAACGAGCGTACGATCGTCTCAAACTTCACTTAGCCAAAGAATTTTGCCAGCTT 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAAGAAACGAGCCTACGATCGTCTCAAACTTCACTTAGCCAAAGAATTTTGCCAGCTA 180
Query 181 CCTTTCATGCCACACGGTCGTGAGGTTCCAACCTTTATGTCCAAAGAGCTTTTCGTCAAC 240
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 181 CCTTTCATGCCACACGGTCGTGATGTTCCAACCTTTATGCCCAAAGAGCTTTTCGTCAAC 240
Query 241 TACCTTGACGCTTACGTTGCCCGTTTCGACATCAACCCTAGGTACAACCGTACCGTGAAG 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACCTTGACGCTTACGTTTCCCGTTTCGACATCAACCCTAGGTACAACCGTACCGTGAAG 300
Query 301 TCCTCAACGTTCGATGAGTCCAATAACAAGTGGAGGGTCGTGGCCGAAAACACGGTAACC 360
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 301 TCCTCAACGTTCGATGAGTCCAATAACAAGTGGAGGGTCGAGGCGGAAAACACGGTGACC 360
Query 361 GGAGAAACCGAGGTGTATTGGTCGGAGTTTCTGGTGGTTGCGACCGGGGAGAACGGAGAT 420
|||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 361 GGAGAAACCGAGGTCTATTTGTCGGAGTTTCTGGTGGTTGCGACTGGGGAGAATGGAGAT 420
Query 421 GGGAATATTCCGATGGTGGAGGGGATTGACACTTTTGGGGGAGAGATTATGCACTCGAGT 480
|||||||||||||||||| | |||||||| ||||| ||||||||| |||||||||||
Sbjct 421 GGGAATATTCCGATGGTGAAAGGGATTGAAACTTTCCCCGGAGAGATTTTGCACTCGAGT 480
Query 481 GAGTACAAGTCCGGTCGTGATTTTAAAGATAAAAATGTTCTTGTGGTCGGAGGTGGAAAT 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGTACAAGTCCGGTCGTGATTTTAAAGATAAAAATGTTCTTGTGGTCGGAGGTGGAAAT 540
Query 541 TCCGGTATGGAGATTAGTTTTGATCTTTGCAACTTCGGAGCTAATACGACCATTCTAATT 600
||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 541 TCCGGTATGGAGATTTGTTTTGACCTTTGCAACTTCGGAGCTAATACGACCGTTCTCATT 600
Query 601 AGAACTCCAAGACACGTGGTGACTAAAGAAGTGATACACTTGGGGATGACACTTCTGAAG 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 AGAACTCCAAGACACGTGGTGACTAAAGAAGTGATACACTTGGGGATGTCACTTCTGAAG 660
Query 661 TATGCTCCAGTGGCGATGGTCGACACATTGGTGACGACTATGGCAAAAATTTTGTACGGA 720
|||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 661 TATGTTCCAGTGACGATGGTGGACACATTGGTGACGACTATGGCGAAAATTTTGTACGGA 720
Query 721 GATCTCTCCAAGTACGGACTCTTCCGACCAAAACAAGGTCCTTTCGCCACCAAACTCTTT 780
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 721 GATCTCTCCAAGTACGGACTTTTCCGACCAAAACAAGGTCCTTTTGCCACCAAACTCTCC 780
Query 781 ACCGGAAAAGCTCCTGTCATTGATGTTGGAACTGTCGAGAAGATTCGCGATGGCGAGATT 840
|||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 781 ACCGGAAAAGCTCCTGTCATTGATGTTGGAACTGTCCAAAAGATTCGCGGTGGCGAGATT 840
Query 841 CAGGTTATCAATGGTGGGATTGGAAGCATCAACGGGAAGACCTTGACGTTCGAAAACGGA 900
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 841 CAGGTCATCAATGGTGGGATTGGAAGCATCAACGGCAAGACCTTGACGTTCGAAAATGGA 900
Query 901 CATAAACAAGATTTCGATGCGATTGTGTTTGCTACTGGTTACAAAAGCTCCGTTTGCAAT 960
| | ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 901 CTTGAACAAGACTTCGATGCGATTGTGTTTGCAACTGGTTACAAAAGCTCTGTTTGCAAT 960
Query 961 TGGTTAGAGGACTATGAATACGTGATGAAGAAGGATGGATTCCCCAAAGCACCGATGCCA 1020
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 961 TGGTTAGAGGACTATGAATACGTGATGAAGAAGGATGGATTTCCCAAAACACCGATGCCA 1020
Query 1021 AAACATTGGAAAGGAGAGAAGAATCTTTACTGTGCCGGATTTTCAAGAAAAGGAATCGCC 1080
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1021 AAGCATTGGAAAGGAGAGAAGAATCTTTACTGTGCCGGATTTTCAAGAAAGGGAATCGCC 1080
Query 1081 GGAGGTGCTGAGGATGCTATGTCTGTAGCCGACGACATCAGATCTATCTTGGCTACCTTA 1140
|||| || |||||||||||||| || || ||||||||||||||||||||||||||| ||
Sbjct 1081 GGAGCCGCGGAGGATGCTATGTCCGTCGCTGACGACATCAGATCTATCTTGGCTACCATA 1140
Query 1141 AAAAA 1145
|||||
Sbjct 1141 AAAAA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5