BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48920.1
Length=1966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474037 jgi|Araly1|474037|fgenesh2_kg.1__3991__AT1G48920.1 2599 0.0
Ahg359775 jgi|Araly1|359775|fgenesh1_pg.C_scaffold_960000001 265 1e-69
Ahg479366 jgi|Araly1|479366|fgenesh2_kg.3__2067__AT3G18610.1 198 1e-49
Ahg359762 jgi|Araly1|359762|fgenesh1_pg.C_scaffold_905000001 108 2e-22
Ahg891972 jgi|Araly1|891972|Al_scaffold_0007_3958 104 3e-21
Ahg887862 jgi|Araly1|887862|Al_scaffold_0210_1 104 3e-21
Ahg350903 jgi|Araly1|350903|fgenesh1_pg.C_scaffold_6001496 104 3e-21
Ahg335341 jgi|Araly1|335341|fgenesh1_pg.C_scaffold_1001906 102 9e-21
Ahg893202 jgi|Araly1|893202|Al_scaffold_0006_1198 76.8 5e-13
> Ahg474037 jgi|Araly1|474037|fgenesh2_kg.1__3991__AT1G48920.1
Length=1925
Score = 2599 bits (1407), Expect = 0.0
Identities = 1789/1966 (91%), Gaps = 55/1966 (3%)
Strand=Plus/Plus
Query 3 AAATATCTTCACGCAGCTGTCTAGGGTTTTTCGCCTCTTTCTCAACTCTCTTCTCGAAAA 62
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AAATATCTTCACGCAGCTGTCTAGGGTTTTTCGCCTCTTTCTCAACTCTC-TCTCGAAAA 59
Query 63 CCTAGCAGTCGTCTCTTTCTCAGTTCTCCATGGGAAAGTCTAAATCCGCCACCAAAGTTG 122
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 60 CCTAGCAGTCGTCTCTTTCTTAGTTCTCCATGGGCAAGTCTAAATCCGCCACCAAAGTTG 119
Query 123 TTGCAGAGATTAAGGCCACTAAGCCTTTGAAGAAAGGCAAGAGAGAGCCTGAAGATGATA 182
|||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 TTGCAGCTCCTGCTGCCACTAAGCCTTTGAAGAAAGGCAAGAGAGAGCCTGAGGATGATG 179
Query 183 TTGACACCAAAGTGAGTCTTAAGAAGCAGAAGAAAGACGTGATTGCTGCTGTCCAGAAGG 242
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 TTGATACCAAAGTGAATCTTAAGAAGCAGAAGAAAGACGTGATTGCTGCTGTTCAGAAGG 239
Query 243 AAAAAGCTGTGAAGAAGGTTCCTAAGAAGGTTGAGAGCTCTGA-TGATTCAGATTCTGAA 301
||||||||||||||||||| ||||||||||||||||||||||| | | ||||| ||||||
Sbjct 240 AAAAAGCTGTGAAGAAGGTGCCTAAGAAGGTTGAGAGCTCTGACTCA-TCAGACTCTGAA 298
Query 302 TCTGAGGAAGAGGAGAAGGCTAAGAAAGTCCCAGCCAAGAAGGCTGCTTCAAGCAGTGAT 361
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 299 TCTGAGGAAGATGAGAAGGCTAAGAAAGTTCCAGCTAAGAAGGCTGCTTCAAGCAGTGAA 358
Query 362 GAGTCATCTGATGACTCTTCTTCAGATGATGAACCTGCACCCAAGAAGGCCGTTGCTGCT 421
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 359 GATTCATCTGATGACTCTTCCTCAGATGATGAGCCTGCACCCAAGAAGGCCGTAGCTGCT 418
Query 422 ACTAACGGAACTGTTGCAAAGAAGTCTAAGGATGACTCATCATCATCTGATGATGATTCT 481
||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 419 ACTAACGGAACTGTTGCTAAGAAGTCTAAGGATGACTCATC-T--TCTGATGATGATTCG 475
Query 482 TCAGACGAGGAAGTTGCTGTC-ACCAAGAAGCCCGCAGCTGCTGCTAAAAATGGCTCTGT 540
||||||||||||||||||| | ||||||||||| || |||||||| | | ||
Sbjct 476 TCAGACGAGGAAGTTGCTG-CAACCAAGAAGCCTGCTGCTGCTGC------T-G--CTAA 525
Query 541 AAAGGCCAAGAAAGAGAGTTCGTCTGAAGATGATTCATCTTCTGAAGACGAACCTGCGAA 600
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 526 AAAGGCCAAGGCTGAGAGTTCGTCTGAAGATGATTCATCTTCTGAAGAAGAACCTGCAAA 585
Query 601 GAAACCTGCTGCTAAGATTGCCAAGCCAGCTGCTAAGGATTCTTCATCCTCTGATGATGA 660
|||||| |||||||||| ||||||||| ||||| || |||||||| ||||||||||| ||
Sbjct 586 GAAACCAGCTGCTAAGAGTGCCAAGCCGGCTGCCAAAGATTCTTCTTCCTCTGATGAGGA 645
Query 661 CTCAGATGAGGATTCCGAGGATGAGAAACCTGCTACCAAGAAGGCAGCTCCTGCTGCTGC 720
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 646 CTCAGATGATGATTCTGAGGATGAGAAGCCTGCTACCAAGAAGGCAGCTCCTGCTGCTAC 705
Query 721 CAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAAGTGAAGATGA 780
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 706 CAAGGCTGCAAGCAGCTCAGATTCATCAGAAGAAGATTCTGATGAGGAAAGTGAAGATGA 765
Query 781 GAAACCTGCCCAGAAAAAGGCTGACACTAAGGCCT-CTAAAAA--ATCG-AGTAGTGATG 836
||||||| ||||||| |||||||| ||||| | || ||||||| | | ||||||||||
Sbjct 766 GAAACCTTCCCAGAAGAAGGCTGATACTAA-GACTGCTAAAAAGGAGAGCAGTAGTGATG 824
Query 837 AGTCAAGCGAGTCTGAGGAAGATGAGAGTGAAGACGAGGAGGAAACCCCTAA-GAAAAAG 895
| || ||||| ||||||||| |||||||||||||||| | |||||||| || |||||||
Sbjct 825 ATTCTAGCGAATCTGAGGAATCTGAGAGTGAAGACGAGAAAGAAACCCC-AATGAAAAAG 883
Query 896 AGCTCTGATGTAGAAATGGTTGATGCTGAGAAATCAAGTGCTAAACAGCCAAAGACACCA 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 884 AGCTCTGATGTAGAAATGGTTGATGCTGAGAAATCAAGTGCTAAACAGCCAAAGACCCCT 943
Query 956 TCCACTCCTGCTGCTGGAGGATCAAAGACACTCTTTGCTGCCAATCTCTCTTTTAACATT 1015
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||
Sbjct 944 TCCACTCCTGCTGCTGGTGGATCAAAGACACTCTTTGCTGCCAATCTTTCTTTCAATATT 1003
Query 1016 GAAAGAGCAGATGTTGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTC 1075
|||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1004 GAAAGATCAGATGTCGAGAATTTCTTCAAAGAAGTTGGTGAAGTTGTTGATGTTAGATTC 1063
Query 1076 TCTACCAACAGAGACGATGGTTCTTTCAGGGGATTTGGCCATGTTGAGTTCGCATCTTCT 1135
|||||||| ||||| |||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1064 TCTACCAATAGAGATGATGGTAGTTTCAGGGGATTTGGCCATGTTGAGTTCGCTTCTTCC 1123
Query 1136 GAAGAAGCACAGAAGGCGCTTGAATTCCATGGTAGGCCATTGCTCGGTCGTGAGATTCGT 1195
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 1124 GAAGAAGCACAGAAGGCGCTGGAATTCCACGGTAGGCCTTTGCTCGGTCGTGAGATTCGT 1183
Query 1196 CTTGATATTGCTCAGgagagaggtgagagaggcgagagaCCCGCATTCACTCCACAAAGC 1255
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1184 CTTGATATTGCTCAGGAGAGAGGTGAGAGAGGCGAGAGACCTGCATACACTCCACAAAGC 1243
Query 1256 GGCAACT-TCAGAAGTGGTGGTGATGGTGGTGATGAAAAGAAAA-TTTTCGTTAAGGGAT 1313
||||||| | | ||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1244 GGCAACTATAA-AAGTGGTGGTGATGGTGGTGATGAAAA-AAAGGTTTTCGTTAAGGGAT 1301
Query 1314 TTGACGCTTCACTTTCTGAGGATGATATCAAGAACACTTTGAGGGAACATTTCAGTTCAT 1373
||||| ||||||||||||| |||||||||| |||| |||||| ||||||||||||||||
Sbjct 1302 TTGACTCTTCACTTTCTGAAGATGATATCAGGAACGCTTTGACTGAACATTTCAGTTCAT 1361
Query 1374 GTGGAGAGATCAAAAATGTATCTGTTCCAATTGACCGTGACACTGGTAACTCCAAAGGAA 1433
|||||||| | |||| ||||||||||||||| |||||||| ||||| ||||||||||| |
Sbjct 1362 GTGGAGAGGTGAAAACTGTATCTGTTCCAATGGACCGTGAAACTGGCAACTCCAAAGGTA 1421
Query 1434 TTGCTTACCTTGAGTTTTCAGAAGGCAAAGAGAAGGCGTTGGAACTAAATGGAAGTGATA 1493
|||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1422 TTGCTTACGTCGAGTTTTCAGAAGGCAAAGAGAAGGCGTTGGAATTAAATGGAAGTGACA 1481
Query 1494 TGGGAGGA-GGA-TTCTATCTTGTAGTCGATGAGCCTAGACCGAGAGGAGATAGCAGTGG 1551
|||||||| ||| || || ||||||||||||||||||||||||| | | | ||||||
Sbjct 1482 TGGGAGGATGGAGTT-TA----GTAGTCGATGAGCCTAGACCGAGAG-ATA-A-CAGTGG 1533
Query 1552 TGGTGGTGGATTTGGAAGGGGCAATGGTCGTTTCGGTAGTGGTGGTGGCAGAGGAAGAGA 1611
|||||| |||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 1534 TGGTGG---ATTTGGAAGGGGTAATGGTCGTTTTGGTAACAGTGGTGGCAGAGGAAGAGA 1590
Query 1612 TGGAGGTCGTGGTCGTTTTGGTAGTGGTGGTGGCAGAGGAAGAGATGGAGGTCGTGGTCG 1671
|||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 1591 TGGAGGCCGTGGTCGTTTTGGTAACAGTGGTGGCAGGGGAAGAGATGGAGGCCGTGGTCG 1650
Query 1672 TTTTGGTAGTGGTGGTGGCAGGGGAAGTGATCGTGGTCGTGGAAGACCTAGTTTTACTCC 1731
|||||| |||||||||||||||||||| ||| |||||||||||| |||||||||| ||
Sbjct 1651 TTTTGGCAGTGGTGGTGGCAGGGGAAGAGATGGTGGTCGTGGAAAACCTAGTTTT--TC- 1707
Query 1732 CCAAGGTAAGAAGACTACCTTCGGTGA---CGAGTAGAAGCGTCTGTAGAAGAAAAGTCT 1788
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1708 --A-GGTAAGAAGACTACCTTCGGTGATTTCGAGTAGAAGCTTCTGTAGAAGAAAAGTCT 1764
Query 1789 CTTCTTATGTTGTTAACTTATGATACTTCGCATCCTTTTATTGTTTCGTTTCTTTTTTGT 1848
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1765 CTTCTTATGTTGTTAACTTGTGATACTTCGCTTCCTTTTATTGTTTCGTTTCTTTTTTGT 1824
Query 1849 TCTAGTTAAGTTTCTGTCAGAACCTTAAATTTTTGTCTGAATGTTAAGTTAAGCTCAATT 1908
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1825 TCTAGTTACGTTTCTGTCAGAACCTTAAATTT--GTCTGAATGTTAAGTTAAGCTCAATT 1882
Query 1909 TTGAGTGCTTTGGGTGTTCAATCATTGTTATCTTCGTCTATCATTA 1954
|||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 1883 TTGAGTGCTTTGGGTGTTAAATCATT---ATCTTCTTCTATCATTA 1925
> Ahg359775 jgi|Araly1|359775|fgenesh1_pg.C_scaffold_960000001
Length=705
Score = 265 bits (143), Expect = 1e-69
Identities = 191/214 (89%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 544 GGCCAAGAAAGAGAGTTCGTCTGAAGATGATTCATCTTCTGAAGACGAACCTGCGAAGAA 603
||||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 435 GGCCAAGGCTGAGAGTTCGTCTGAAGATGATTCATCTTCTGAAGAAGAACCTTCAAAGAA 494
Query 604 ACCTGCTGCTAAGATTGCCAAGCCAGCTGCTAA-GGATTCTTCATCCTCTGATGA-TGAC 661
||| |||||||||| ||||||| ||||||| || || |||||| | ||||||||| | ||
Sbjct 495 ACCAGCTGCTAAGAGTGCCAAGGCAGCTGCCAAAGG-TTCTTCTTTCTCTGATGAGT-AC 552
Query 662 TCAGATGAGGATTCCGAGGATGAGAAACCTGCTACCAAGAAGGCAGCTCCTGCTGCTGCC 721
|||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 553 TCAGATGATGATTCTGAGGATGAGAAGCCTGCTACCAAGAAGGCAGCTCGTGCTGCTACC 612
Query 722 AAGGCTGCAAGCAGCTCAGATTCATCAGATGAAG 755
||||||||||||| ||||||| ||||||||||||
Sbjct 613 AAGGCTGCAAGCATCTCAGATGCATCAGATGAAG 646
> Ahg479366 jgi|Araly1|479366|fgenesh2_kg.3__2067__AT3G18610.1
Length=1856
Score = 198 bits (107), Expect = 1e-49
Identities = 240/302 (79%), Gaps = 18/302 (6%)
Strand=Plus/Plus
Query 860 GAGAGTGAAGACGAGGAGGAAACCCCTAAGAAAAA-GAGCTCTGATGTAGAAATGGTTGA 918
|||||| |||| ||| | | ||||| |||||||| || ||||||| | |||||||| ||
Sbjct 814 GAGAGTAAAGAAGAGAAAGTGACCCCAAAGAAAAAGGA-CTCTGATATTGAAATGGTGGA 872
Query 919 TGC--TG-AGAAATCAAGTGCTAAA-CAGCCAAAGACACCATCCACTCCTG-CTGC-TGG 972
||| | ||||||||| ||| ||| ||||||||||||||||| ||| | || | ||
Sbjct 873 TGCAGAGCAGAAATCAAATGC-AAAGCAGCCAAAGACACCATCTACT-GAGACT-CAGGG 929
Query 973 AGGATCAAAGACACTCTTTGCTGCCAATCTCT-CTTTTAACATTGAAAGAGCAGATGTTG 1031
|||||||||||| || ||||||| ||||| | |||| || ||||| ||| | || | |
Sbjct 930 AGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTTTCAA-ATTGAGAGATCTGACATAG 988
Query 1032 AGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTCTCTACCAACAGAGACG 1091
||||||||||||||||||||||||||||||||||||||||||| ||| | | | || |
Sbjct 989 AGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTTTCTTC-AT-AT-GATG 1045
Query 1092 ATGGTTC-TTTCAGGGGATTTGGCCATGTTGAGTTCGCATCTTCTGAAGAAGCACAGAAG 1150
|||| | ||| |||| || ||| |||||||| || || ||| | |||||||| ||||||
Sbjct 1046 ATGGGACATTTAAGGG-ATATGGGCATGTTGAATTTGCTTCTCCAGAAGAAGCTCAGAAG 1104
Query 1151 GC 1152
||
Sbjct 1105 GC 1106
> Ahg359762 jgi|Araly1|359762|fgenesh1_pg.C_scaffold_905000001
Length=584
Score = 108 bits (58), Expect = 2e-22
Identities = 64/67 (96%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 712 TGCTGCTGCCAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAAG 771
||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 467 TGCTGCTACCAAGGCTGCAAGCAGTTCAGATTCATCTGATGAAGATTCTGATGAGGAAAG 526
Query 772 TGAAGAT 778
|||||||
Sbjct 527 TGAAGAT 533
> Ahg891972 jgi|Araly1|891972|Al_scaffold_0007_3958
Length=282
Score = 104 bits (56), Expect = 3e-21
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 711 CTGCTGCTGCCAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAA 770
|||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 164 CTGCTGCTACCAAGGCTGCAAGTAGTTCAGATTCATCTGATGAAGATTCTGATGAGGAAA 223
Query 771 GTGAAGAT 778
||||||||
Sbjct 224 GTGAAGAT 231
> Ahg887862 jgi|Araly1|887862|Al_scaffold_0210_1
Length=711
Score = 104 bits (56), Expect = 3e-21
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 711 CTGCTGCTGCCAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAA 770
|||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 593 CTGCTGTTACCAAGGCTGCAAGCAGTTCAGATTCATCTGATGAAGATTCTGATGAGGAAA 652
Query 771 GTGAAGAT 778
||||||||
Sbjct 653 GTGAAGAT 660
> Ahg350903 jgi|Araly1|350903|fgenesh1_pg.C_scaffold_6001496
Length=354
Score = 104 bits (56), Expect = 3e-21
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 711 CTGCTGCTGCCAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAA 770
||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 236 CTGTTGCTACCAAGGCTGCAAGCAGTTCAGATTCATCTGATGAAGATTCTGATGAGGAAA 295
Query 771 GTGAAGAT 778
||||||||
Sbjct 296 GTGAAGAT 303
> Ahg335341 jgi|Araly1|335341|fgenesh1_pg.C_scaffold_1001906
Length=447
Score = 102 bits (55), Expect = 9e-21
Identities = 63/67 (94%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 712 TGCTGCTGCCAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAAG 771
||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 330 TGCTGCTACCAAGGCTGCAAGTAGTTCAGATTCATCTGATGAAGATTCTGATGAGGAAAG 389
Query 772 TGAAGAT 778
|||||||
Sbjct 390 TGAAGAT 396
> Ahg893202 jgi|Araly1|893202|Al_scaffold_0006_1198
Length=399
Score = 76.8 bits (41), Expect = 5e-13
Identities = 44/45 (98%), Gaps = 1/45 (2%)
Strand=Plus/Minus
Query 24 TAGGGTTTTTCGCCTCTTTCTCAACTCTCTTCTCGAAAACCTAGC 68
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 220 TAGGGTTTTTCGCCTCTTTCTCAACTCT-TTCTCGAAAACCTAGC 177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895075300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5