BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48940.1
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474039 jgi|Araly1|474039|fgenesh2_kg.1__3993__AT1G48940.1 806 0.0
> Ahg474039 jgi|Araly1|474039|fgenesh2_kg.1__3993__AT1G48940.1
Length=537
Score = 806 bits (436), Expect = 0.0
Identities = 508/541 (94%), Gaps = 11/541 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGGACAAAAGATTGTTCTGCTTTCGATCTTCGT-ATGTTTTTACGTGTTTTCACT 59
||||||| ||||||||||||||| |||||||||||||| ||| ||| |||||||||||||
Sbjct 1 ATGGGTGTACAAAAGATTGTTCTCCTTTCGATCTTCGTAATG-TTTAACGTGTTTTCACT 59
Query 60 TGTGTCATGTACTGAATTTGAAGCTGGAGGAGAAAATGGTTGGATCATTCCACAATCTAG 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 TGTGTCATGTACTGAATTTGAAGCTGGAGGAGAAAATGGTTGGATCATACCACAATCTAG 119
Query 120 TAACCAAAGTGACATCTTTAACCAATGGGCTTCCAAGAACCGGTTTAAAGTTGGCGACAC 179
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAACCAGAGTGATATTTTTAACCAATGGGCTTCCAAGAACCGGTTTAAAGTTGGCGACAC 179
Query 180 TATCCGTTTCAAGTACAAGAAAGACTCTGTTTTGGTGGTAACAGAAGACGAATACAAGAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TATCCGTTTCAAGTACAAGAAAGACTCTGTTTTGGTGGTAACAGAAGACGAGTACAAGAA 239
Query 240 ATGTCAGACGACCAAACCGGAACTT-TACTCCAACCACGATGATACGGTTTTCAAATTGG 298
||| ||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 240 ATGCCAGACGACCAAACCGAAA-TTATACTCGAACCACGATGATACGGTTTTCAAATTGG 298
Query 299 ACCGTCCCGGTTTGTTTTATTTCATTAGTGGTGTCTCAGGCCACTGTGAACAAGG-TCAG 357
||||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||
Sbjct 299 ACCGTCCCGGTTTGTTTTATTTCATAAGCGGTGTCTCAGGCCACTGTGAA-AAGGGTCAG 357
Query 358 AAAATGATTATTAAAGTCATGGAGGTGGAATCTACGCCGCAATCTCCTCCACCTTCCTCG 417
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||
Sbjct 358 AAAATGATTATTAAAGTCATGGAGGTCGAATCTCCGCCGCAATCTCCTCCACCTTCTTCG 417
Query 418 TCTCTACCCGCTTC---AGCTCACAAGAAAAACCACGCCGTGAGGAAAACGAGTCGGTTC 474
|||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTCTAGCCGCTTCTTCAACTCACAAGAAAAACCACGCCGTGAGGAAAACGAGTCGGTTC 477
Query 475 TTAGGTGCCGGTTTAGTTACAATTTCGATTCTGGTTATT-ACGGTTTTTAGTCTTGTGTA 533
||||||||||||||| |||||||||| ||||||| | || |||||||||||| |||||||
Sbjct 478 TTAGGTGCCGGTTTAATTACAATTTCAATTCTGGCT-TTGACGGTTTTTAGTGTTGTGTA 536
Query 534 G 534
|
Sbjct 537 G 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19459350390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5