BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48950.1
Length=2080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474040 jgi|Araly1|474040|fgenesh2_kg.1__3994__AT1G48950.1 2990 0.0
> Ahg474040 jgi|Araly1|474040|fgenesh2_kg.1__3994__AT1G48950.1
Length=1991
Score = 2990 bits (1619), Expect = 0.0
Identities = 1892/2019 (94%), Gaps = 38/2019 (2%)
Strand=Plus/Plus
Query 1 TCGTTTTCGTGTTGTTCCGTCACCGCCATCTAAACACCACTCCTT----CACCTGAGCCG 56
||||||| ||||| ||||||||| ||||||||||| ||||||||| |||||||| |
Sbjct 1 TCGTTTTTGTGTTATTCCGTCACTGCCATCTAAAC-CCACTCCTTCACCCACCTGAG-C- 57
Query 57 CGGCGAAGAAGGTGGAAGCGAATCTATTAGATTAGGGTTTATACGATTATAGGAGGACGA 116
| |||| ||| ||| |||||| | ||||||||| | |||||||| |||||
Sbjct 58 C-GCGACGAA----GAA--GAATCTGTAAGATTAGGG----T----TTATAGGAAGACGA 102
Query 117 AATCAGAAAGACGAGCTAGAGGAAGCTGCGATTTTTCTGGAAGA-TAAACAATGGCACAA 175
||| || | ||||||| ||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 103 AATTAGTACGACGAGCAAGAGGAAGCTGCG-TTTTTCTGGAAGATTTAACAATGGCACAA 161
Query 176 GATTCAGAGAAGAGATTCCACCAAATCATGGATAAACTCTTTACCCCATCGAAATCTCAG 235
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 162 GATTCAGAGAAGAGATTCCACCAAATCATGGACAAACTCTTTACCCCATCGAAATCTCAG 221
Query 236 CTTCCTTCTTCCTCCACCAGTTCTTCTGTAGAGCAACAATCAAGAGGCAAGAAGCGTCAA 295
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 222 CTTCCTTCGTCCT---CCAGTTCTTCTGTAGAGCAACAATCAAGAGGCAAGAAGCGTCCA 278
Query 296 AATCCTTCATCTGCGTTAGCATTGGTTGAGCCAAAGATTGTATTAGCTACCATTGATAGG 355
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 279 AATCCTTCATCTGCGTTAGCATTGGTTGAGCCTAAGACGGTATTAGCTACCATTGATAGG 338
Query 356 TCTTCAGCTTTGAAGGTTCCTGCTGGAACATCGCCTTCTGGTCTTTGCAGGCCGTGGGAT 415
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 339 TCTTCAGCTTTGAAAGTTCCTGCTGGAACATCGCCGTCTGGTCTTTGTAGGCCGTGGGAT 398
Query 416 AGAGGAGATCTTATGAGGAGGCTTGCTACTTTCAAGTCCATGACTTGGTTTGCCAAGCCA 475
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 399 AGAGGAGATCTTATGAGGAGGCTAGCTACTTTTAAGTCCATGACTTGGTTTGCCAAGCCC 458
Query 476 CAGGTTATTAGTGCTGTAAATTGTGCGAGGAGAGGGTGGGTGAATGATGACGCAGATTCT 535
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CAGATTATTAGTGCTGTAAATTGTGCGAGGAGAGGGTGGGTGAATGATGACGCAGATTCT 518
Query 536 ATAGCTTGTGAATCTTGTGGAGCTCATCTTTACTTTTCAGCCCCATCTTCTTGGTCTAAG 595
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 519 ATAGCTTGTGAATCTTGTGGGGCTCATCTTTATTTTTCAGCCCCATCTTCTTGGTCTAAG 578
Query 596 CAACAAGTGGAAAAAGCGGCATCAGTCTTCAGCTTAAAGTTAGAGAGTGGACACAAATTA 655
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 579 CAACAAGTGGAGAAAGCGGCATCAGTCTTCAGCTTAAAGTTGGATAGTGGACACAAATTA 638
Query 656 CTTTGTCCATGGATAGAGAATTCATGTGAAGAAACGCTTTCTGAGTTTCCGTT-AATGGC 714
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| |
Sbjct 639 CTTTGTCCATGGATAGAGAATTCATGCGAAGAAACGCTTTCTGAGTTTCC-TTCAATGAC 697
Query 715 ACCGCAGGATTTAGTCGATAGACACGAAGAACGGTCAGAAGCTTTACTTCAACTTTTGGC 774
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 698 ACCGCAGGATTTGGTAGATAGACACGAAGAACGGTCAGATGCTTTACTTCAACTTTTGGC 757
Query 775 CCTTCCTGTTATTTCACCATCAGCCATTGAGTACATGAGGAGCTCAGATCTGGAGGAATT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CCTTCCTGTTATTTCACCATCAGCCATTGAGTACATGAGGAGCTCAGATCTGGAGGAATT 817
Query 835 TCTCAAACGACCTATTGCACCTGC-ATGTAGTGACACAGCAGCAGAAAGTTCTCAAACTG 893
||||||||||||||||||| |||| | |||||| ||| ||||||||||| |||||||| |
Sbjct 818 TCTCAAACGACCTATTGCATCTGCCA-GTAGTGTCACCGCAGCAGAAAGCTCTCAAACAG 876
Query 894 AATCCCTTACCAATCATGTTGGAGCGAGCCCGGCTCAACTTTTCTACCAGGCACAAAAAC 953
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 877 AATCCCTTATCAATCATGTTGGAGCGAGCCCTGCTCAACTTTTCTACCAGGCACAAAAAC 936
Query 954 TTATCAGTTTATGTGGCTGGGAACCGCGGGCACTTCCTTATATTGTGGACTGCAAAGATA 1013
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 937 TTATCAGTTTATGTGGCTGGGAACCACGGGCACTTCCTTATATTGTGGATTGCAAAGATA 996
Query 1014 AATTGAGTGAGACGGCTAGGGGTACAGAGACTATTGATTTACTGCCAGAAACTGCTACCC 1073
||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 997 AATCAAGTGAGACCGCTAGGGGTACAGATACTATTGATTTACTGCCAGAAACTGCTACCC 1056
Query 1074 GCGAGCTTCTAAGCATCTCTGAATCAACCCCAATTCCAAATGGCA-TATCAGGGAATAAT 1132
|||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||
Sbjct 1057 GCGAGCTTCTAAGCATCTCTGATTCAACCCCAATTCCAGATGG-AGTATCAGGGAATAAT 1115
Query 1133 GAGAACCCAACACTTCCTGACACATTAAACTCTGATCCTAGTTCTGTTGTACTGGACTGC 1192
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1116 GAGAACCCAACACTTCCTGACACATTAAACTCTGATCCGAGTTCTGTAGTACTTGACTGC 1175
Query 1193 AAGCTCTGTGGGGCCTGTGTTGGTCTATGGGTTTTCTCAACTGTTCCGAGACCACTAGAA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 AAGCTCTGTGGGGCCTGTGTTGGTCTATGGGTTTTCTCAACTGTTCCGAGACCACTAGAA 1235
Query 1253 TTGTGTAGAGTCACTGGTGATACCGAAATCAATATAGAGAAACATCCCAAGGGTGGTACC 1312
||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||
Sbjct 1236 TTGTGTAGAGTCACTGGTGATACCGAAATTAGTACAGAGAAACATCCCAGGGGTGGTACT 1295
Query 1313 CTTCAACATC-AACCTTCAAGCTTGAAGTTTACCATAGCAGGAGGACCCCCAGCAACAAA 1371
|||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1296 CTTCAA-AGCCAACCTTCAAGCTTGAAATTTACCATAGCAGGAGGACCCCCAGCAACAAA 1354
Query 1372 GCAAAACTTCAAAGCAACAATATCGCTGCCTATTATCGGGAGGAACCTGAGGTCAAGATT 1431
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1355 GCAAAACTTCAAAGCAACAATATCGCTGCCTGTTATCGGGAGGAACTTGAGGTCAAGATT 1414
Query 1432 TGCTTCGTACTCTAGAGATCATGATCACGGGGATGTCAGTTCTATTCAGGATCAACAGAG 1491
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1415 TGCTTCTTACTCCAGAGATCATGATCATGGGGATGTCAGTTCTATTCAGGATCAACAGAG 1474
Query 1492 TAGAACTGCAGAGAACAACGGTGATGTTACACAAAATAGCAATCAAGTGATGAATGATAT 1551
|| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1475 TAAAACTGCAGAGAACAACGGTGATGTTACACAAAATAGTGATCAAGTGGTGAATGATAT 1534
Query 1552 AGGAGAGAAGGCTGATGGTGGAAGAAACTCAACTGATGTAGAGAGTGATATTGCACTACA 1611
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1535 AGGAGAGAAGGCTGATGGAGGAAGCAACTCAACTGATGTAGAGAGTGATATTGCACTACA 1594
Query 1612 AAACAAAGACAAACAAATGATGGTAGTAAGATCAAATCTTCCTGAAAACAACAAACCTAG 1671
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 1595 CAACAAAGACAAACAAATGATGGTAGTAAGATCAAATCTTCCTGATAACAGCAAACCAAA 1654
Query 1672 GGATTCAACTGCAGAAAAATCAGCGACATCAAACAAACAGATGGAATTTGATCCAATCAA 1731
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1655 GGATTCAACTGCAGGAAAATAAGTGACATCAAACAAACAGATGGAATTTGATCCAATCAA 1714
Query 1732 GCAACATAGGCATTTCTGTCCTTGGATCTGGTCAACGGGTAGAAGAGGCCCTGGATGGCG 1791
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1715 GCAACATAGGCATTTCTGTCCTTGGATCTGGTCAACGGGTAGAAGAGGTCCTGGATGGCG 1774
Query 1792 ACAGACTCTGTCTGCATTACAACGGCATAAAGGATCTTGTCAGACTCCACC-ATCATCCT 1850
|||||||||||||||||||||||| |||||||||||||||||||||||||| | || |||
Sbjct 1775 ACAGACTCTGTCTGCATTACAACGCCATAAAGGATCTTGTCAGACTCCACCGA-CACCCT 1833
Query 1851 CTTCCCTCTTCAAGGTAGATGATCCGTTAACATCTGTTCGAAACCTATTTAAGTCGCCAT 1910
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1834 CTTCCCTGTTCAAGGTAGATGATCCGTTAACATCTGTTCGGAACCTATTTAAGTCGCCAT 1893
Query 1911 CCCCGAAAAAACGAAAGCTGAACGGAGGATCTTCAAGCTGAGACACCAGACGATTTTGTC 1970
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 CCCCCAAAAAACGAAAACTGAACGGAGGATCTTCAAGCTGAGACACCAGACGATTTTGTT 1953
Query 1971 CCTGaaaaaaaCTTGAACCCTCTTGGTCTACACTGTATC 2009
|||||||||| ||||| |||||||| |||||||||||||
Sbjct 1954 CCTGAAAAAA-CTTGAGCCCTCTTGATCTACACTGTATC 1991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78237363230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5