BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48960.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474041 jgi|Araly1|474041|fgenesh2_kg.1__3995__AT1G48960.1 1327 0.0
> Ahg474041 jgi|Araly1|474041|fgenesh2_kg.1__3995__AT1G48960.1
Length=865
Score = 1327 bits (718), Expect = 0.0
Identities = 819/867 (94%), Gaps = 9/867 (1%)
Strand=Plus/Plus
Query 16 gagagTGAGTCACAAGAATTACGACACTAAACCTAAACCCAATTCTCgaga-aaaaga-a 73
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 GAGAGAGAGTCACAAGAATTACGACACTAAACCTAAACCCAATTCTCGAGAGAAAAGAGA 60
Query 74 -ag--agaaagagagaaTAAATAAATGGAAGATGTACGGAGGATTGTGGTGGTCGTAGAA 130
|| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 61 GAGAAAGAAAGAGAGAATATATAAATGGGAGATGTACGGAGGATTGTGGTGGTCGTCGAA 120
Query 131 GATAAACAAGCGGCGAGGACGGCGTTACAATGGGCACTTCACAACC-TCCTCCGTCAAGG 189
||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 121 GATAAACAAGCGGCGAGGACGGCGTTACAATGGGCACTTCATAACCAT-TTCCGTCAAGG 179
Query 190 TGACGTCATAGTACTCCTCCACGTGTACTCTCCTCCACCGCGTAAGAAGAAATCCACGGC 249
|||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 180 TGACGTCATAGTCCTTCTCCACGTGTACTCTCCACCGCCGCGTAAGAAGAAATCCACGGC 239
Query 250 GGCGCGTCTCCTCCGCCGTCACGGATACAATCTTGCTCTCTCTTTCCGTGAAATCTGCGA 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 GGCGCGTCTCCTCCGCCGTCACGGATACAATCTTGCTCTCTCTTTCCGTGAAATCTGTGA 299
Query 310 CTCTTTCTTCAACACGAATACTGAGATCATTGTGAGAGAAGGAGATGATGATGGAAGAAT 369
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 CGCTTTCTTCAACACGAATACTGAGATCATTGTAAGAGAAGGAGATGATGATGGAAGAAT 359
Query 370 GATTGCTCAAGTTGTCAAAGAGATTGGTGCTTCGATGCTTCTCGTTGGTCTCCATCAGAA 429
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 GATTGCTCAAGTTGTGAAAGAGATTGGTGCTTCGATGCTCCTCGTTGGTCTCCATCAGAA 419
Query 430 CAGCTTTCTTTACAGATGGGCAATAAGTGGGATCGATGTAGCGAGAAATTTCAATTGCAA 489
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 420 CAGCTTTCTTTACAGATGGGCATTGAGTGGGATCGATGTAGCGAGAAATTTCAATTGTAA 479
Query 490 AGTGATGGCTATAAAGCAGCCTTCACCGGAACTTTCGCCTCCGGTGAAGGTTAAGGGACA 549
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 480 AGTGATGGCTATAAAGCAGCCTTCACCGGAACTTTCGCATCCGGTGAAGGTTAAAGGACA 539
Query 550 CAAGACCTCTAAGGCGACGGCGACAGCGACTTCAGATTGTTTAACTAATTTTGACTTTTC 609
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 540 CAAGACCTCTCAGGCGACGGCGACAGCGACTTCATATAGTTTAACTAATTTTGACTTCTC 599
Query 610 ACAAATTGAAATTTCTGGATTACAGGTTCCTGAGATTCCGACACCAACTAAAGTGCCATA 669
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 CCAAATTGAAATTTCTGGATTACAGGTTCCTGAGATTCCGACACCACCTAAAGTGCCATA 659
Query 670 CAGATTATGTCCGAGTCCTCATGCCATACTATGGAGAACAAGGCCCCGGAGGAGATCCAA 729
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 660 CAGATTATGTCCGAGTCCTCATGCCATACTCTGGAGAACAAGACCCCGGAGGAGATCCAA 719
Query 730 AGACCAATACGGTGTCGGTTCATAGTCTACGATATTTGCTTTTGAGACAAACCCACCAAA 789
||||||||||||||||| ||| ||||||| ||| |||| |||||||||||||| ||||||
Sbjct 720 AGACCAATACGGTGTCGTTTCCTAGTCTATGATTTTTGTTTTTGAGACAAACC-ACCAAA 778
Query 790 ACTTTACCTTCAAATAAACAAATTTTACTCGATACTAAAAAGAAAG-TCATTCCAATCAC 848
|||||||| |||||||||| |||| |||||||||| ||||| ||| |||||||||||||
Sbjct 779 ACTTTACCATCAAATAAACCAATTATACTCGATACAAAAAAAAAAAATCATTCCAATCAC 838
Query 849 ATTATTCTTAAACAATGAACAGTTTTT 875
|||||||||||||||||||||||||||
Sbjct 839 ATTATTCTTAAACAATGAACAGTTTTT 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5