BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48970.1 Length=2441 Score E Sequences producing significant alignments: (Bits) Value Ahg923251 jgi|Araly1|923251|scaffold_104532.1 3059 0.0 > Ahg923251 jgi|Araly1|923251|scaffold_104532.1 Length=2037 Score = 3059 bits (1656), Expect = 0.0 Identities = 1908/2030 (94%), Gaps = 16/2030 (1%) Strand=Plus/Plus Query 283 CTCAATGGATACTCGTCGCGGAGCTCTTGCGGTTCCTAAAGTCCGTCGAGTAGGTTTCTT 342 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 19 CTCCATGGATACTCGTCGTGGAGCTCTTGCGGTTCCTAAAGTCCGTCGAGTAGGTTTCTT 78 Query 343 CACATCAATCGAGCCGCCTCCAGAATCATCATTACAACGACCAAATCGAAGCCAATCCGG 402 ||||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||| Sbjct 79 CACATCAATCGAGCCGCCTCCAGAATC--C-TCACAACGACCGAATCGAAGCCAATCCGG 135 Query 403 TCCAGTAGATGCAACCACCTCTTCTTCTCCTCTCTCCGATTCACCTTCCGGTAACTTAAT 462 ||||||||| ||||| || ||||| |||||||||||| ||||||| ||||| || ||||| Sbjct 136 TCCAGTAGAGGCAACAACGTCTTCGTCTCCTCTCTCCAATTCACCCTCCGGCAATTTAAT 195 Query 463 TTCTCCGG-TCTTAATTCCACCGTCGCGTCACCATTCCGACAATTTAACCTCTCGCGTtg 521 ||||||| || ||||||||||||||||||| || || |||||||||||| | | | | Sbjct 196 ATCTCCGGTTC-TAATTCCACCGTCGCGTCATCACTCTGACAATTTAACCAC-C-C---G 249 Query 522 ctgctgctgctgctgctCCTGTGCCCGTCCCTGGACCTGCCGCTTTCCGCCGATACTTAA 581 | | |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 250 C-GTTGCTGCTGCTGCTCCTGTACCCGTCCCTGGACCTGCTGCTTTCCGCCGATACTTAG 308 Query 582 CTCCTGAACGGACTCTTCTTCACGTTGGTAGTTACAATCCTCCGGATTCGCTTCTCGGGA 641 ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 CTCAGGACCGGAGTCTTCTTCACGTTGGTAGTTACAATCCTCCGGATTCGCTTCTCGGGA 368 Query 642 CATCATCACCCTCGAGTAACGGAGGGCTTTCTGAGGATTCGGCTTCTCTGTTTGGGTTCC 701 ||||| |||| |||||||| |||| | ||||||||||||| ||||||||||||||||||| Sbjct 369 CATCAACACCGTCGAGTAATGGAGAGTTTTCTGAGGATTCTGCTTCTCTGTTTGGGTTCC 428 Query 702 AACGGAGTGATTCGACGAAATTATCAGCAAGCTTACCTAATGGAGGCTTTGATTTGACTC 761 ||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| Sbjct 429 AACGGAGTGATTCTACGAAATTATCAGCAAGTTTTCCTAATGGAGGCTTTGATTTGACTT 488 Query 762 TAGCTGTTAGAGCTCCTCAGGAATCTGAAACCAAAATTGCGACCACGTCTGCTTCTC-AA 820 ||||||||||||||||||||||||| |||||||||||||| || |||| ||||| | || Sbjct 489 TAGCTGTTAGAGCTCCTCAGGAATCGGAAACCAAAATTGCAACGGCGTCGGCTTC-CGAA 547 Query 821 GGGAAAAAGAAGATCGCCGAA-GT-TT-CTGGAAAGAGTGAGTCTGCGACCACAAAACCC 877 ||||||||||||||| ||| | || | ||||||||||| || | ||||||||| ||| Sbjct 548 GGGAAAAAGAAGATCAAAGAATATCTTGCAGGAAAGAGTGAATCAGTGACCACAAAGCCC 607 Query 878 CAGAAGGAAAAGGAACCAAAAGCATTGAAAGATAAAACCACTAAAGCAGAAAGACGTGCC 937 |||||||||||||||| ||||||| |||||||||||||||||||||||||||| || || Sbjct 608 CAGAAGGAAAAGGAACAAAAAGCACTGAAAGATAAAACCACTAAAGCAGAAAGGCGGGCT 667 Query 938 ATCCAAGAGGCACAACGGGCAGCAAAAGCTGCTGCAAAAGGCGAAGGAAGCAGGCGTGCA 997 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 668 ATCCAAGAGGCACAACGGGCAGCAAAAGCTGCTGCAAAAGGCGAAGGAAGCAGACGTGCA 727 Query 998 GATGAGTCTGGTAGAGCTAATCCTGGCAAGGCTGCCATAAAGCCCCAACCAAAGAAAGAA 1057 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 728 GATGAGTCTGGTAGAGCTAATCCTGGCAAGGCTACCAAAAAGCCCCAACCAAAGAAAGAA 787 Query 1058 AGACTTCCCGTCACGTCCTCTGTTTCTGAAAAAACAGCTGTAGCAGTAGAAAAAGAGAAG 1117 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 788 AGACTTCCCGTCACATCCTCTGTTTCTGAAAAAACAGCTGTAGCAGTAGAAAAAGAGAAG 847 Query 1118 AGGATGGATGTCCCTCAGACACAAATGCAGTATGATGATAAAAGCCGAGTGGATAAAGCT 1177 |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct 848 AGGATGGATGTCCCTCAGACACTAATGCAGTATGACGATAGAAGCCGAGTGGATAAAGCT 907 Query 1178 AAGAGGCGAGCTGTGGTTGAACAGACCGAGAGCAAGAACAAAGTTGAATTATTTCTCCAT 1237 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 908 AAGAGGCGTGCTGTGGTTGAACAGGCCGAGAGCAAGAACAAAGTTGAATTATTTCTCCAT 967 Query 1238 CTTCCTCAATACGAACGCAGCAATCAGCTTCCCAATTTAAGCTCCAATTTTTTCACACTC 1297 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 968 CTTCCTCAATATGAACGCGGCAATCAGCTTCCCAATTTAAGCTCCAATTTTTTCACACTC 1027 Query 1298 GATTCCATACACCATGCAGTCTATAAGGTGGGTTTGCAACATTTGGCTGGAGATATATCT 1357 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1028 GATTCCATACACCATGCGGTCTATAAGGTGGGTTTGCAACATTTGGCTGGAGATATATCT 1087 Query 1358 GGGGACAATGCACGATGTATTGCCATGCTCCAAGCATTTCAAGAAGCTATAGAAGATTAC 1417 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1088 GGGGACAATGCGCGATGTATTGCCATGCTCCAAGCATTTCAAGAAGCTATAGAAGATTAC 1147 Query 1418 AGTACACCTCCTATGAAAGACCTGACCATGGACTTGACAGCCAAGATAAACGGTTATGTT 1477 | ||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct 1148 ATTACACCTCCAATGAAAGACCTGACCATGGACTTGACAACCAAAATAAATGGTTATGTT 1207 Query 1478 TCATTCTTGATAGAATGTCGTCCCCTCTCCATGAGCATGGGAAACGCAATCAGGTTCCTG 1537 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1208 TCATTCTTGATAGAATGTCGTCCGCTCTCCATGAGCATGGGAAACGCAATCAGGTTCCTG 1267 Query 1538 AAGAACCAAATCAGAAAACTACCTGTAAACCTGTCAGAATCAGAGGCAAAAAGTTCCCTC 1597 |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 1268 AAGAACCAAATCAGAAAACTACCTGTAAACCTGTCAGAGTCAGAGGCAAAAATTTCCCTT 1327 Query 1598 TGTTCTGACATTGGCCGGTTCATAGACGAGAAGACAATTATTGCAGATAAGGCAATCGTG 1657 |||||||||||||| || |||||||||||||| | |||| ||||||| |||||||||||| Sbjct 1328 TGTTCTGACATTGGTCGTTTCATAGACGAGAAAATAATTCTTGCAGACAAGGCAATCGTG 1387 Query 1658 CAACACGCCGTAACAAAAATCAGAGACGGAGAAGTTCTTCTTACATATGGATTCTCTTGT 1717 |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 1388 CAACACGCTGTAACAAAAATCAGAGACGGAGAAGTCCTTCTCACATACGGATTCTCTTGC 1447 Query 1718 GTGGTTGAAATGATTCTCCTATACGCCCATGAGATTGGGAAAAAGTTCCGCGTAGTGATT 1777 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 1448 GTGGTTGAAATGATTCTCTTATACGCCCATGAGATTGGGAAAAAATTCCGCGTAGTGATT 1507 Query 1778 GTAGACTCACGCCCTAACCTTGAAGGGCAAAAGCTACTCCGTAGACTTGTGACTCGTGGC 1837 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1508 GTAGACTCACGCCCTAATCTTGAAGGGCAAAAGCTACTTCGTAGACTTGTGACTCGTGGC 1567 Query 1838 CTCGACTGTACCTACACTCATATAAATGCCATTTCCTACATCATGCGTGAGGCTACACGT 1897 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1568 CTCGACTGTACCTACACTCATATAAACGCCATTTCCTACATCATGCGTGAAGCTACACGT 1627 Query 1898 GTTTTTCTCGGTGCTTCATCAATATACTCGAATGGAACTCTTTACGCAAGAGTTGGCACA 1957 |||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1628 GTTTTTCTTGGGGCTTCATCAATATTCTCGAATGGAACTCTTTATGCAAGAGTTGGCACA 1687 Query 1958 TCCTGCATTGCAATGGTTGCAAACGCATTTAGTGTTCCTGTAATTGTTTGTTGTGAAGCT 2017 |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1688 GCCTGCATTGCAATGGTTGCAAATGCATTTAGTGTTCCTGTAATTGTGTGTTGTGAAGCT 1747 Query 2018 TACAAGTTCCATGAAAGAGTCCTACTTGATTCAATCTGCTCCAACGAACTTGGCGATCCT 2077 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1748 TACAAGTTCCATGAAAGAGTCCTACTTGATTCAATCTGCTCCAACGAACTTGGTGATCCA 1807 Query 2078 GACGCCGTAGCCAACATACCATCATTTAGAACCAATGCAAAGCATTCAAAGACAATGGAC 2137 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1808 GACGCCGTAGCCAACATACCATCATTTAGAACCAATGCAAAGCATTCAAAGACGATAGAC 1867 Query 2138 AACAACAAAAACCTTCAGTTTCTGAATCTAATGTATGATTCTACTCCTTCAGAATATATA 2197 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1868 AACAACAAAAACCTTCAGTTTCTGAATCTAATGTACGATTCTACTCCTTCAGAATATATA 1927 Query 2198 TCTATGATTGTTTCGGATTATGGAATGATTCCTCCGACGAGTATACCAGTGATTGTACGT 2257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1928 TCTATGATTGTTTCGGATTATGGAATGATTCCTCCGACGAGTATACCAGTGATTGTACGT 1987 Query 2258 GAATACAGGAGAGAAAACTTGTTGCTATAAAAAGGTAATGTGTTTAGAAT 2307 ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1988 GAATACAGGAGAGAACACTTGTTGCTATAAAAAGGTAATGTGTTTAGAAT 2037 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91987941675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5