BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48970.1
Length=2441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923251 jgi|Araly1|923251|scaffold_104532.1 3059 0.0
> Ahg923251 jgi|Araly1|923251|scaffold_104532.1
Length=2037
Score = 3059 bits (1656), Expect = 0.0
Identities = 1908/2030 (94%), Gaps = 16/2030 (1%)
Strand=Plus/Plus
Query 283 CTCAATGGATACTCGTCGCGGAGCTCTTGCGGTTCCTAAAGTCCGTCGAGTAGGTTTCTT 342
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 19 CTCCATGGATACTCGTCGTGGAGCTCTTGCGGTTCCTAAAGTCCGTCGAGTAGGTTTCTT 78
Query 343 CACATCAATCGAGCCGCCTCCAGAATCATCATTACAACGACCAAATCGAAGCCAATCCGG 402
||||||||||||||||||||||||||| | | ||||||||| |||||||||||||||||
Sbjct 79 CACATCAATCGAGCCGCCTCCAGAATC--C-TCACAACGACCGAATCGAAGCCAATCCGG 135
Query 403 TCCAGTAGATGCAACCACCTCTTCTTCTCCTCTCTCCGATTCACCTTCCGGTAACTTAAT 462
||||||||| ||||| || ||||| |||||||||||| ||||||| ||||| || |||||
Sbjct 136 TCCAGTAGAGGCAACAACGTCTTCGTCTCCTCTCTCCAATTCACCCTCCGGCAATTTAAT 195
Query 463 TTCTCCGG-TCTTAATTCCACCGTCGCGTCACCATTCCGACAATTTAACCTCTCGCGTtg 521
||||||| || ||||||||||||||||||| || || |||||||||||| | | | |
Sbjct 196 ATCTCCGGTTC-TAATTCCACCGTCGCGTCATCACTCTGACAATTTAACCAC-C-C---G 249
Query 522 ctgctgctgctgctgctCCTGTGCCCGTCCCTGGACCTGCCGCTTTCCGCCGATACTTAA 581
| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 250 C-GTTGCTGCTGCTGCTCCTGTACCCGTCCCTGGACCTGCTGCTTTCCGCCGATACTTAG 308
Query 582 CTCCTGAACGGACTCTTCTTCACGTTGGTAGTTACAATCCTCCGGATTCGCTTCTCGGGA 641
||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CTCAGGACCGGAGTCTTCTTCACGTTGGTAGTTACAATCCTCCGGATTCGCTTCTCGGGA 368
Query 642 CATCATCACCCTCGAGTAACGGAGGGCTTTCTGAGGATTCGGCTTCTCTGTTTGGGTTCC 701
||||| |||| |||||||| |||| | ||||||||||||| |||||||||||||||||||
Sbjct 369 CATCAACACCGTCGAGTAATGGAGAGTTTTCTGAGGATTCTGCTTCTCTGTTTGGGTTCC 428
Query 702 AACGGAGTGATTCGACGAAATTATCAGCAAGCTTACCTAATGGAGGCTTTGATTTGACTC 761
||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 429 AACGGAGTGATTCTACGAAATTATCAGCAAGTTTTCCTAATGGAGGCTTTGATTTGACTT 488
Query 762 TAGCTGTTAGAGCTCCTCAGGAATCTGAAACCAAAATTGCGACCACGTCTGCTTCTC-AA 820
||||||||||||||||||||||||| |||||||||||||| || |||| ||||| | ||
Sbjct 489 TAGCTGTTAGAGCTCCTCAGGAATCGGAAACCAAAATTGCAACGGCGTCGGCTTC-CGAA 547
Query 821 GGGAAAAAGAAGATCGCCGAA-GT-TT-CTGGAAAGAGTGAGTCTGCGACCACAAAACCC 877
||||||||||||||| ||| | || | ||||||||||| || | ||||||||| |||
Sbjct 548 GGGAAAAAGAAGATCAAAGAATATCTTGCAGGAAAGAGTGAATCAGTGACCACAAAGCCC 607
Query 878 CAGAAGGAAAAGGAACCAAAAGCATTGAAAGATAAAACCACTAAAGCAGAAAGACGTGCC 937
|||||||||||||||| ||||||| |||||||||||||||||||||||||||| || ||
Sbjct 608 CAGAAGGAAAAGGAACAAAAAGCACTGAAAGATAAAACCACTAAAGCAGAAAGGCGGGCT 667
Query 938 ATCCAAGAGGCACAACGGGCAGCAAAAGCTGCTGCAAAAGGCGAAGGAAGCAGGCGTGCA 997
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 668 ATCCAAGAGGCACAACGGGCAGCAAAAGCTGCTGCAAAAGGCGAAGGAAGCAGACGTGCA 727
Query 998 GATGAGTCTGGTAGAGCTAATCCTGGCAAGGCTGCCATAAAGCCCCAACCAAAGAAAGAA 1057
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 728 GATGAGTCTGGTAGAGCTAATCCTGGCAAGGCTACCAAAAAGCCCCAACCAAAGAAAGAA 787
Query 1058 AGACTTCCCGTCACGTCCTCTGTTTCTGAAAAAACAGCTGTAGCAGTAGAAAAAGAGAAG 1117
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AGACTTCCCGTCACATCCTCTGTTTCTGAAAAAACAGCTGTAGCAGTAGAAAAAGAGAAG 847
Query 1118 AGGATGGATGTCCCTCAGACACAAATGCAGTATGATGATAAAAGCCGAGTGGATAAAGCT 1177
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct 848 AGGATGGATGTCCCTCAGACACTAATGCAGTATGACGATAGAAGCCGAGTGGATAAAGCT 907
Query 1178 AAGAGGCGAGCTGTGGTTGAACAGACCGAGAGCAAGAACAAAGTTGAATTATTTCTCCAT 1237
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 908 AAGAGGCGTGCTGTGGTTGAACAGGCCGAGAGCAAGAACAAAGTTGAATTATTTCTCCAT 967
Query 1238 CTTCCTCAATACGAACGCAGCAATCAGCTTCCCAATTTAAGCTCCAATTTTTTCACACTC 1297
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CTTCCTCAATATGAACGCGGCAATCAGCTTCCCAATTTAAGCTCCAATTTTTTCACACTC 1027
Query 1298 GATTCCATACACCATGCAGTCTATAAGGTGGGTTTGCAACATTTGGCTGGAGATATATCT 1357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GATTCCATACACCATGCGGTCTATAAGGTGGGTTTGCAACATTTGGCTGGAGATATATCT 1087
Query 1358 GGGGACAATGCACGATGTATTGCCATGCTCCAAGCATTTCAAGAAGCTATAGAAGATTAC 1417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GGGGACAATGCGCGATGTATTGCCATGCTCCAAGCATTTCAAGAAGCTATAGAAGATTAC 1147
Query 1418 AGTACACCTCCTATGAAAGACCTGACCATGGACTTGACAGCCAAGATAAACGGTTATGTT 1477
| ||||||||| ||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 1148 ATTACACCTCCAATGAAAGACCTGACCATGGACTTGACAACCAAAATAAATGGTTATGTT 1207
Query 1478 TCATTCTTGATAGAATGTCGTCCCCTCTCCATGAGCATGGGAAACGCAATCAGGTTCCTG 1537
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1208 TCATTCTTGATAGAATGTCGTCCGCTCTCCATGAGCATGGGAAACGCAATCAGGTTCCTG 1267
Query 1538 AAGAACCAAATCAGAAAACTACCTGTAAACCTGTCAGAATCAGAGGCAAAAAGTTCCCTC 1597
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1268 AAGAACCAAATCAGAAAACTACCTGTAAACCTGTCAGAGTCAGAGGCAAAAATTTCCCTT 1327
Query 1598 TGTTCTGACATTGGCCGGTTCATAGACGAGAAGACAATTATTGCAGATAAGGCAATCGTG 1657
|||||||||||||| || |||||||||||||| | |||| ||||||| ||||||||||||
Sbjct 1328 TGTTCTGACATTGGTCGTTTCATAGACGAGAAAATAATTCTTGCAGACAAGGCAATCGTG 1387
Query 1658 CAACACGCCGTAACAAAAATCAGAGACGGAGAAGTTCTTCTTACATATGGATTCTCTTGT 1717
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1388 CAACACGCTGTAACAAAAATCAGAGACGGAGAAGTCCTTCTCACATACGGATTCTCTTGC 1447
Query 1718 GTGGTTGAAATGATTCTCCTATACGCCCATGAGATTGGGAAAAAGTTCCGCGTAGTGATT 1777
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1448 GTGGTTGAAATGATTCTCTTATACGCCCATGAGATTGGGAAAAAATTCCGCGTAGTGATT 1507
Query 1778 GTAGACTCACGCCCTAACCTTGAAGGGCAAAAGCTACTCCGTAGACTTGTGACTCGTGGC 1837
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1508 GTAGACTCACGCCCTAATCTTGAAGGGCAAAAGCTACTTCGTAGACTTGTGACTCGTGGC 1567
Query 1838 CTCGACTGTACCTACACTCATATAAATGCCATTTCCTACATCATGCGTGAGGCTACACGT 1897
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1568 CTCGACTGTACCTACACTCATATAAACGCCATTTCCTACATCATGCGTGAAGCTACACGT 1627
Query 1898 GTTTTTCTCGGTGCTTCATCAATATACTCGAATGGAACTCTTTACGCAAGAGTTGGCACA 1957
|||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1628 GTTTTTCTTGGGGCTTCATCAATATTCTCGAATGGAACTCTTTATGCAAGAGTTGGCACA 1687
Query 1958 TCCTGCATTGCAATGGTTGCAAACGCATTTAGTGTTCCTGTAATTGTTTGTTGTGAAGCT 2017
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1688 GCCTGCATTGCAATGGTTGCAAATGCATTTAGTGTTCCTGTAATTGTGTGTTGTGAAGCT 1747
Query 2018 TACAAGTTCCATGAAAGAGTCCTACTTGATTCAATCTGCTCCAACGAACTTGGCGATCCT 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1748 TACAAGTTCCATGAAAGAGTCCTACTTGATTCAATCTGCTCCAACGAACTTGGTGATCCA 1807
Query 2078 GACGCCGTAGCCAACATACCATCATTTAGAACCAATGCAAAGCATTCAAAGACAATGGAC 2137
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1808 GACGCCGTAGCCAACATACCATCATTTAGAACCAATGCAAAGCATTCAAAGACGATAGAC 1867
Query 2138 AACAACAAAAACCTTCAGTTTCTGAATCTAATGTATGATTCTACTCCTTCAGAATATATA 2197
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1868 AACAACAAAAACCTTCAGTTTCTGAATCTAATGTACGATTCTACTCCTTCAGAATATATA 1927
Query 2198 TCTATGATTGTTTCGGATTATGGAATGATTCCTCCGACGAGTATACCAGTGATTGTACGT 2257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1928 TCTATGATTGTTTCGGATTATGGAATGATTCCTCCGACGAGTATACCAGTGATTGTACGT 1987
Query 2258 GAATACAGGAGAGAAAACTTGTTGCTATAAAAAGGTAATGTGTTTAGAAT 2307
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1988 GAATACAGGAGAGAACACTTGTTGCTATAAAAAGGTAATGTGTTTAGAAT 2037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91987941675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5