BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48980.1
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314327 jgi|Araly1|314327|fgenesh1_pm.C_scaffold_1003107 1491 0.0
> Ahg314327 jgi|Araly1|314327|fgenesh1_pm.C_scaffold_1003107
Length=1008
Score = 1491 bits (807), Expect = 0.0
Identities = 933/994 (94%), Gaps = 7/994 (1%)
Strand=Plus/Plus
Query 699 ATGGACAACTATTCTTTTATCCGGCAGTCGGAACTCGAGATCGCTTCAAAAGTCAACCTT 758
||||||||| ||||||||||| |||||||||||||| |||||| |||| ||||| |||||
Sbjct 1 ATGGACAACAATTCTTTTATCAGGCAGTCGGAACTCAAGATCGGTTCAGAAGTCTACCTT 60
Query 759 CTCTCCAAACGAATCCGC-TCTCAAGAACAAGAAGTTGCTGTAGATTTTTCTC--AT-AT 814
|||||||||||||||| | |||||||||||||||||| | ||||| |||||| || ||
Sbjct 61 CTCTCCAAACGAATCC-CTTCTCAAGAACAAGAAGTTACACTAGATGTTTCTCATATGAT 119
Query 815 GACATTGGAGGATGAGCTCAGTGAGGAAGAGGATCATAAAGATTCAAGTAGAGAGGCTTT 874
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 120 GACATTGGAGGATGAGCTCAGTGAGGAAGAGGATCAGAAATATTCAAGTAGAGAGGCTTT 179
Query 875 TGGTTCGAGTCTTGAGAATCATAAACTGTCGAGGAAGCAAAGA-ACGCATATTCGGGCGA 933
|| | |||||||||||||||||||||| || ||| |||||||| | ||||||||||||||
Sbjct 180 TGATGCGAGTCTTGAGAATCATAAACTTTCTAGGGAGCAAAGAGA-GCATATTCGGGCGA 238
Query 934 TAAACGTGAAGAGAAAAAGAGACTTTGTTTGCTTGGAGAAAGTTAATGGAGAGCTTGTTA 993
|||| ||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||||
Sbjct 239 TAAATGTGAAGAGAAAGAGAGACTTTGTTTACTTGGAGAAAGTTAACGGAGAGATTGTTA 298
Query 994 ACATACTAGAGGGACTCGAATTGCATACCGAAGTTTTTAATGCAGCGGAACAGAGAAGGA 1053
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 299 ACATACTAGATGGACTCGAATTGCATACCGAAGTTTTTAATGCAGCGGAACAGAAAATGA 358
Query 1054 TAGTTGATAAAGTGTGTGAATTGCAAGAAAAGGTTCAAAAAGGAGAACTAAAGCGTGCTT 1113
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 359 TAGTTGATAAAGTGTGTGAATTGCAAGAGAAGGGACAAAAAGGAGAACTAAAGCGTGCTT 418
Query 1114 TTACTGCTCAAGGCAAAGGACGTTCAACTATTCAATTCGGCTGTTGTTTCAACTACCGTA 1173
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 TTACTGCTCGAGGCAAAGGACGTTCAACAATTCAATTCGGCTGTTGTTTCAACTACCGTA 478
Query 1174 CAAGCAAAACTGGAAACCTGGCGGGGATTCTTAAACATGAAACTGTTGATCCATTGCCTC 1233
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAAGCAAAGCTGGAAACCCGGCGGGGATTCTTAAACATGAAACTGTTGATCCATTGCCTC 538
Query 1234 ATCTTTTCAAGGTGATCATAAGAAGGTTGGTTAAATGGCATGTTCTGCCTCCAACTTGTG 1293
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 539 ATCTTTTCAAGGTGATCATTAGAAGGTTGGTTAAATGGCATGTTCTACCTCCAACTTGTG 598
Query 1294 TTCCTGATTGTTGTGTAGTCAATATTTATGATGAAGGTGATTGCATACCTCCTCATATCG 1353
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 599 TTCCTGATTGTTGTGTAGTCAACATTTATGATGAAGGTGATTGCATACCTCCTCATATAG 658
Query 1354 ACCATCACGACTTCCTCCGCCCGTTCTGTACTGTTTCTTTCCTTAGTGAATGCAATATTC 1413
|| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 ACAATCACGCCTTCCTCCGCCCGTTCTGTACCGTTTCTTTCCTTAGTGAATGCAATATTC 718
Query 1414 TCTTCGGATCAAACCTTAAAGTTGAGGAAACCGGTGAATATTCGGGTGGTTCATATTCAT 1473
||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| || |
Sbjct 719 TCTTCGGATCAAACCTTAAAGTTAAAGAAACCGGTGAATATACGGGTGGTTCATACTCGT 778
Query 1474 TACCGCTTCCTGTTGGATCAGTGCTTGTGTTAAACGGGAATGGAGCTGATGTAGCTAAGC 1533
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 TACCGCTTCCTGTTGGATCAGTGCTTGTGTTAAACGGGAACGGAGCTGATGTAGCTAAGC 838
Query 1534 ATTGTGTACCTGAAGTTCCCACGAAAAGAATATCAATCACATTTAGAAAAATGGATGAGT 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATTGTGTACCTGAAGTTCCCACGAAAAGAATATCAATCACATTTAGAAAAATGGATGAGT 898
Query 1594 CAAAATGGCCAGTCTGGTACACACCAGAACCTTATTTGCAAGGGATTCAGCCATTGACAT 1653
|||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | |
Sbjct 899 CAAAATGGCCAGTCTGGTTCACACCAGAGCCTTATTTGCAAGGGATACAGCCATTGCCGT 958
Query 1654 ACGAGCTGAAATCTTGTGGCTCCTCTGACCATGT 1687
|||||||||||||| ||| |||||||| |||||
Sbjct 959 ACGAGCTGAAATCTCCTGGTTCCTCTGATCATGT 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68714801980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5