BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48990.1
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474043 jgi|Araly1|474043|fgenesh2_kg.1__3997__AT1G48990.1 789 0.0
> Ahg474043 jgi|Araly1|474043|fgenesh2_kg.1__3997__AT1G48990.1
Length=650
Score = 789 bits (427), Expect = 0.0
Identities = 543/596 (91%), Gaps = 19/596 (3%)
Strand=Plus/Plus
Query 14 AtctctctctctcCTCGCCGAAAATGGCTGATCGAACAAACCCTAGCAGCCACACCCAAC 73
|||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1 ATCTCTCTATCTCCTCGCCGAGAATGGCTGACCGAACCAACCCTAGCAGCCACACACAAC 60
Query 74 AGAGACCCATCTATAACTCAACCACCGTCCCTCGCAG---CAACACCACCACCAACCACC 130
| ||||||||||| || ||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 61 ACAGACCCATCTACAATTCAACCACCTTCCCACGCAGCAACAACACCACCACCAACCACC 120
Query 131 CCCTCTCATCTCTTCTCCGTCAGCTACTACAATCGCAGTCTCCTAATCACTCCGGTCAAC 190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CCCTCTCATCTCTTCTCCGTCAGCTACTACAATCGCAGTCTCCTAATCACTCCGGTCAGC 180
Query 191 TCTTCGGCTTCCTCGCATTCTTCATCTCCGGTGGAATACTCCTTTTACTCACCGGAATCA 250
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 181 TCTTCGGCTTCCTCGCATTTTTCATCTCTGGTGGAATCCTCCTTTTACTCACCGGAATCA 240
Query 251 CTGTCACCGCTT-TCGTCCTTGGATTCATTGCTTTTCTCCCACTCATCATTATCT-CAAG 308
| |||||||||| | ||||| ||||||||||||||||||||||||||||| || | ||||
Sbjct 241 CCGTCACCGCTTCT-GTCCTCGGATTCATTGCTTTTCTCCCACTCATCATCAT-TACAAG 298
Query 309 CCCTATTTGGATCCCTTTGTTCCTTATCGTAACCGGATTCTTGTCCCTCGCTGGA-CTCA 367
|||||||||||||||||||||||| |||| ||||||||||||||| |||| ||| | |
Sbjct 299 CCCTATTTGGATCCCTTTGTTCCTCGTCGTTACCGGATTCTTGTCCGTCGCCGGATCCC- 357
Query 368 TCTTGGCTACAGGGGCTGTTGTGTCGTGGTTGTATCGATATTTTAAAGGCATGCATCCA- 426
|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 358 TCTTCGCTACGGGGGCTGTTGTGTTGTGGTTGTATCGATATTTTAAAGGCATGCATCCAC 417
Query 427 TTAAGGTCGGATCAGGTTGATTATGCTCGGAGTCGAATTCATGACACGGCGGCTCATGTC 486
|| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 418 TTG-GGTCGGATCAGGTGGATTATGCTCGGAGTCGAATCCATGACACGGCGGCCCATGTA 476
Query 487 AAAGATTATGCTGGTGGGTACTTCCATGGTACGCTGAAAGATGCAGCACCTGGTGCATGA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAAGATTATGCTGGTGGGTACTTCCATGGTACGCTGAAAGATGCAGCACCTGGTGCATGA 536
Query 547 AAGGTTGACCCTTAACCGTATAGTTTGGTCTCATGTAGAAATTACACGGttttttt 602
| |||| ||| | ||| |||||||||||||||||||||||||| |||||||
Sbjct 537 A-GGTTAACCG--A----TATGGTTTGGTCTCATGTAGAAATTACACG-TTTTTTT 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26571673149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5