BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49000.1
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474044 jgi|Araly1|474044|fgenesh2_kg.1__3998__AT1G49000.1 822 0.0
> Ahg474044 jgi|Araly1|474044|fgenesh2_kg.1__3998__AT1G49000.1
Length=607
Score = 822 bits (445), Expect = 0.0
Identities = 558/612 (91%), Gaps = 9/612 (1%)
Strand=Plus/Plus
Query 100 CTTTTTCAACTTCTCATTCTTCATTTCCGGCGAAGTTATGGACCGATCAACGCCGGAACA 159
|||||| |||||||||||||| | |||||||||| ||||||||| ||||||||||||||
Sbjct 1 CTTTTTTTACTTCTCATTCTTCGTATCCGGCGAAGATATGGACCGTTCAACGCCGGAACA 60
Query 160 TAACTCATCTC-CCTCACACAAGCGTCTAAGCGTGAGCTTTCTCGTCTCAATGATGGTTC 218
||||||| | | |||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 61 TAACTCA-CCCTCCTCCCACAAACGTCTAAGCGTGAGCTTTCTCGTCTCTATGATGGTTC 119
Query 219 TCTGCGCCAGGCATGCGAATCGGCTCTCGAAGAAACTAAAGCTGAAGTCAAAGAAGCGAA 278
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 120 TCTGCGCCAGGCATGCGAATCGGCTCTCAAAGAAACTAAAGCTAAAGTCTAAGAAGCGAA 179
Query 279 CTTGCAGCGGCGGAGAGGGTGGAGGAGAAAGATTCCGATGGAATATGATAAGCTCGTCGA 338
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 CTCACAGCGGCGGAGAGGGTGGAGGAGAAAGATTCCGATGGAATATGATAAGCTCGTCTA 239
Query 339 TGAGTTCTCCTCGGCCAAAAGAGTTGTTCACGACTTT-AAGCAACAAGGCGATGACCATG 397
||||||||||| |||| ||||||||||||||| |||| || ||||||||||||||| |||
Sbjct 240 TGAGTTCTCCTAGGCCGAAAGAGTTGTTCACGGCTTTGAA-CAACAAGGCGATGACGATG 298
Query 398 GTCCGCCGG-AAAAACCCGCCGGAGGAAAAAGCAACCGCCATGGAGGAGGAGCATGGCCT 456
||||||||| ||||| | |||| || ||||||| || ||||||||||||| |||||
Sbjct 299 GTCCGCCGGGAAAAAACGGCCG-AGAAAAAAGCGGTGGCGGTGGAGGAGGAGCACGGCCT 357
Query 457 TTGGCAGAGAGAGATATTGATGGGAGGCAAATGTGAGCCGTTGGATTTCTCGGGTGTGAT 516
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTGGCAGAAAGAGATATTGATGGGAGGCAAATGTGAGCCGTTGGATTTCTCGGGTGTGAT 417
Query 517 ATATTACGACT-CTAACGGACGGCTATTAAACGAAGTGCCACCGAGATCACCACGTGGCA 575
|||||||||| | ||||||||||| |||| || |||||||| ||||| ||||||||||
Sbjct 418 TTATTACGACTGC-AACGGACGGCTGCTAAATGAGGTGCCACCAAGATCGCCACGTGGCA 476
Query 576 CTCCATTACCCAGTTACCCGACCCGTTCTTAAGTCGGGTCGCAGTTAAACTTAATGGGAA 635
||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 477 CTCTGTTACCTAGTTACCCGACCCGTTCTTAAGTCGGGTCGCAGTTAAACCTAATGG-AA 535
Query 636 CGAATGATTATTAAGCAACTTCATTAGATGATTGAAACGTCGATTAGGCAGCAAAACAAA 695
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 536 CGAATGATTATTAAGCAACTTCATTAGATGATTGAAACGTCGATTACGCAGCAAAACAAA 595
Query 696 ATTACTATGTAT 707
| || |||||||
Sbjct 596 AATATTATGTAT 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25999829394
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5