BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49005.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474045 jgi|Araly1|474045|fgenesh2_kg.1__3999__AT1G49005.1 429 1e-119
> Ahg474045 jgi|Araly1|474045|fgenesh2_kg.1__3999__AT1G49005.1
Length=303
Score = 429 bits (232), Expect = 1e-119
Identities = 282/305 (92%), Gaps = 7/305 (2%)
Strand=Plus/Plus
Query 283 ATGACGAAACAACCTAAGCCGTGTAGTTTCCTCTTCCACATCTCTCTAC---TCTCTGCG 339
|||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1 ATGAAGAAACAACCTAAGCCGTGTAGTTTCCTCTTCCACATCGCTCTACTGATCTCTGCG 60
Query 340 TTGTTTGT-TTTCCTTCTCATTTCTTTTGCTTTTACGACTTCTTACAAGCTTAAATCCGG 398
|||| || ||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CTGTTCGTATTT-CTTCTTATTTCTTTTGCTTTTACGACTTCTTACAAGCACAAATCCGG 119
Query 399 CATTAATAGTTTAGGCCATAAGAGAATTCTAGCAAGTAATTTTGATTTTACTCCGTTTCT 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CATTAATAGTTTAGGCCATAAGAGAATTCTAGCAAGTAATTTTGATTTTACTCCGTTTCT 179
Query 459 CAAGAATAAAGATCGCACTCAACGGCAACGTCAAAGTCCAAGCCTGACTGTAAAAGAAAA 518
||||| ||||||||||||||| ||||||||||||||| ||||||||| | ||||||||
Sbjct 180 CAAGAGCAAAGATCGCACTCAATGGCAACGTCAAAGTCAAAGCCTGACCGGAAAAGAAAC 239
Query 519 CGGTTTC-TGGTACAATGATGAGGAACGGGTGGTACCTAGCGGTCCAAACCCTTTGCATC 577
|| |||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 240 CG-TTTCATGGTACAATGATGAGGAACGGTTGGTACCTAGCGGTCCGAACCCTTTGCATC 298
Query 578 ACTAG 582
|||||
Sbjct 299 ACTAG 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5