BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49005.1 Length=582 Score E Sequences producing significant alignments: (Bits) Value Ahg474045 jgi|Araly1|474045|fgenesh2_kg.1__3999__AT1G49005.1 429 1e-119 > Ahg474045 jgi|Araly1|474045|fgenesh2_kg.1__3999__AT1G49005.1 Length=303 Score = 429 bits (232), Expect = 1e-119 Identities = 282/305 (92%), Gaps = 7/305 (2%) Strand=Plus/Plus Query 283 ATGACGAAACAACCTAAGCCGTGTAGTTTCCTCTTCCACATCTCTCTAC---TCTCTGCG 339 |||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1 ATGAAGAAACAACCTAAGCCGTGTAGTTTCCTCTTCCACATCGCTCTACTGATCTCTGCG 60 Query 340 TTGTTTGT-TTTCCTTCTCATTTCTTTTGCTTTTACGACTTCTTACAAGCTTAAATCCGG 398 |||| || ||| ||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 61 CTGTTCGTATTT-CTTCTTATTTCTTTTGCTTTTACGACTTCTTACAAGCACAAATCCGG 119 Query 399 CATTAATAGTTTAGGCCATAAGAGAATTCTAGCAAGTAATTTTGATTTTACTCCGTTTCT 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CATTAATAGTTTAGGCCATAAGAGAATTCTAGCAAGTAATTTTGATTTTACTCCGTTTCT 179 Query 459 CAAGAATAAAGATCGCACTCAACGGCAACGTCAAAGTCCAAGCCTGACTGTAAAAGAAAA 518 ||||| ||||||||||||||| ||||||||||||||| ||||||||| | |||||||| Sbjct 180 CAAGAGCAAAGATCGCACTCAATGGCAACGTCAAAGTCAAAGCCTGACCGGAAAAGAAAC 239 Query 519 CGGTTTC-TGGTACAATGATGAGGAACGGGTGGTACCTAGCGGTCCAAACCCTTTGCATC 577 || |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 240 CG-TTTCATGGTACAATGATGAGGAACGGTTGGTACCTAGCGGTCCGAACCCTTTGCATC 298 Query 578 ACTAG 582 ||||| Sbjct 299 ACTAG 303 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21290818662 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5