BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49030.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337030 jgi|Araly1|337030|fgenesh1_pg.C_scaffold_1003595 590 7e-168
> Ahg337030 jgi|Araly1|337030|fgenesh1_pg.C_scaffold_1003595
Length=666
Score = 590 bits (319), Expect = 7e-168
Identities = 505/591 (85%), Gaps = 27/591 (5%)
Strand=Plus/Plus
Query 192 CAAGCTGAGCAGATATATCCCAACAACGGTGG-AGTGGTTAACCAACCAAACCAAGTACC 250
||||| ||||||| | |||||||||| ||||| || |||| ||||||||| ||||||
Sbjct 85 CAAGCCGAGCAGAAACATCCCAACAATGGTGGAAG-GGTTGACCAACCAAGTGGAGTACC 143
Query 251 GAT--G-AGACCTGGTCC-ACCTACGTATATCAATCA-AAGTGCAACATTTAACCAACCA 305
|| | ||||| || || |||||| ||||||| || ||| || || ||||||
Sbjct 144 TATGGGCAGACC-GGGCCAACCTACAAATATCAA-CACCGGTGGAATGGGTAGCCAACCT 201
Query 306 TATGGAGTATC-AATGG-CCGGACC-GGTCCA--TA--CA-CAGCCATCGAACTGGACTT 357
||||||||| | ||||| || | || ||| || | || ||||||||||||||||
Sbjct 202 TATGGAGTA-CAAATGGTCC-GTCCACCACCAGTTATTAACCAACCATCGAACTGGACTT 259
Query 358 CAGGTCTATTTGATTGCATGAACGACGGCGAAAATGCTCTCATCACATGCTGTTTTCCAT 417
|||| || |||||||||||| | || || ||||||||| ||||||||| || || || |
Sbjct 260 CAGGGCTTTTTGATTGCATGCATGATGGTGAAAATGCTATCATCACATTTTGCTTCCCGT 319
Query 418 TCGTCACGTTCGGACAGATCGCAGAGGTTATCGATGAAGGAGCGACCA-GTTGTGGGACG 476
||||||||||||||||||||||||||||| |||| ||||| || | || ||||||||||
Sbjct 320 TCGTCACGTTCGGACAGATCGCAGAGGTTGTCGACGAAGGCGC-AACATCTTGTGGGACG 378
Query 477 -GCTGGAATGTTGTATGGGTTGATATGTTGTTTGTTTGCGATACCGTGTGTGTA-TACAT 534
| ||||||||||||||| |||||||||||| |||||| |||||| ||| | || | |||
Sbjct 379 AG-TGGAATGTTGTATGGATTGATATGTTGTCTGTTTGGGATACCATGTATATACT-CAT 436
Query 535 GCACATTCCGGA-CCAAGCTCCGAAGCAAGTACGGGTTACCGGATGCTCCAGCTCCAGAT 593
||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 437 GCACATTCC-GAGCCAAACTCCGAAATAAGTACGGGTTACCGGATGCTCCAGCTCCAGAT 495
Query 594 TGGATCACTCATTGCTTCTGTGAATATTGTGCTCTTTGCCAAGAATATCGTGAACTCAAG 653
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 496 TGGATCACTCATTGCTTCTGTGAATACTGTGCTCTTTGCCAAGAATATCGTGAACTCAAA 555
Query 654 AATCGTGGCCTTGACCCTTCCATTGGATGGATTGGGAACGTGCAAAAGCAGCGAATGGGT 713
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 556 AATCGTGGCCTTGACCCTTCCATTGGCTGGATTGGGAATGTGCAAAAGCAGCGAATGGGT 615
Query 714 CAGCAACAAGAGATGATGGCTCCTCCAATGGGTCAACGAATGATGGGTTGA 764
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CAGCCACAAGAGATGATGGCTCCTCCAATGGGTCAACGAATGATGGGTTGA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5