BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49100.1
Length=2667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923264 jgi|Araly1|923264|scaffold_104545.1 595 5e-169
> Ahg923264 jgi|Araly1|923264|scaffold_104545.1
Length=805
Score = 595 bits (322), Expect = 5e-169
Identities = 367/389 (94%), Gaps = 1/389 (0%)
Strand=Plus/Plus
Query 619 GTTTTACGGTACCCCGATGATGTCAACGACCGTAGATGGTTCCCATTCTCATATAAGGAG 678
||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 109 GTTATA-GGTACCCCGATGATCTCAACGACCGTAGATGGTTCCCATTCTCATATGAGGAG 167
Query 679 TGGAAAATTGTAACCACAACTCTCAATGTAAACACTTCAAATGGTTTTGATCTACCACAA 738
|||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TGGACACTTGTAACTACCACTCTCAATGTAAACACTTCAAATGGTTTTGATCTACCACAA 227
Query 739 GGTGCAATGGCATCGGCTGCAACCCGTGTTAATGATAATGGGACATGGGAATTTCCATGG 798
||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct 228 GGTGCAATGGCATCGGCTGCAACACGTGTGAATGACAATGGAACATGGGAATTTCCGTGG 287
Query 799 AGCTTAGAGGATTCTACCACACGGTTTCACATTTACCTTCACTTCGCAGAGCTTCAAACT 858
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AGCTTAAAGGATTCTACCACACGGTTTCACATTTACCTTCACTTCGCAGAGCTTCAAACT 347
Query 859 TTGTTAGCCAACGAGACTAGAGAATTCAATGTTTTGCTGAATGGAAAAGTTTATTATGGA 918
||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||||
Sbjct 348 TTGTTAGCCAACGAGACCAGGGAATTCAATGTTTTGTTGAATGGAAAAAATTATTATGGA 407
Query 919 CCTTATAGTCCTAAAATGTTAAGTATAGATACTATGAGCCCCCAACCCGATTCGACATTG 978
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 408 CCTTTTAGTCCTAAAATGTTAAGTATAGATACTATGAGCCCCCAACCCGATTCGAAATTG 467
Query 979 ACATGTAAAGGAGGAAGTTGCCTCTTGCA 1007
|||||||||||||| ||||||||||||||
Sbjct 468 ACATGTAAAGGAGGGAGTTGCCTCTTGCA 496
Score = 381 bits (206), Expect = 1e-104
Identities = 248/268 (93%), Gaps = 3/268 (1%)
Strand=Plus/Plus
Query 1387 CTCTTGATCATAAACTTAAGTGGAAACAATTTTAGCGGTCAACTTCCTCAAAAGCTTATA 1446
|||||| || ||| |||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 489 CTCTTG--CA-AAATTTAAGTGGAAACAATTTTAGTGGTCAACTTCCTGAAAAGTTTATA 545
Query 1447 GATAAGAAAAGACTGAAGCTGAATGTTGAAGGAAACCCTAAGCTTCTTTGCACAAAAGGA 1506
| |||||| || |||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 546 CAGAAGAAAGGATTGAAATTGAATGTTGAAGGCAACCCTAAGCTTCTTTGTACAAAAGGA 605
Query 1507 CCATGTGGAAATAAACCTGGAGAAGGTGGACATCCCAAAAAGAGTATAATTGTACCGGTT 1566
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 606 CCATGTGGAAACAAACATGGAGTAGGTGGACATCCCAAAAAGAGTATAATTGTACCGATT 665
Query 1567 GTCTCATCAGTTGCTTTAATAGCTATTCTTATAGCTGCATTGGTTTTGTTTTTGGTTCTT 1626
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 666 GTCTCATCAGTTGCTTTAATAGCTGTTCTTATAGCTGCATTGGTTTTGTTTTTGGTTCTT 725
Query 1627 AGAAAGAAAAATCCATCAAGGAGTAAAG 1654
||||||||||||||||||||||||||||
Sbjct 726 AGAAAGAAAAATCCATCAAGGAGTAAAG 753
Score = 135 bits (73), Expect = 1e-30
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGTATTTTCATGGAGTTTTATGTGTGTTCATCATCACAGTTGCTTTTATACAT 60
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 21 ATGGAGAAGTATTTTCATGGAGTTTTATGTGTGTCCATCATCACATTTGCTTTTATACAT 80
Query 61 GTTGTTCAGGCTCAAGATC 79
|||||||||||||||||||
Sbjct 81 GTTGTTCAGGCTCAAGATC 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100596337045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5