BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49110.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474052 jgi|Araly1|474052|fgenesh2_kg.1__4006__AT1G49110.1 832 0.0
> Ahg474052 jgi|Araly1|474052|fgenesh2_kg.1__4006__AT1G49110.1
Length=781
Score = 832 bits (450), Expect = 0.0
Identities = 573/631 (91%), Gaps = 13/631 (2%)
Strand=Plus/Plus
Query 27 TACGCGATAGCGTGTTAGCCAAGGCAAACTCACTAGGGATTTGTCCTCTAAGCCACGAGA 86
|||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
Sbjct 4 TACGCGATAGCGTGTTAGCCAAGGCAAACTCATTAGGGATTTGTCCTCCAAGTCACGAAA 63
Query 87 TGAATCTCCGTCAAATCTACGAAG-TT-T-AATGGATGAAAACAAAAGCCGGTATTGAAG 143
||||||| ||||| || ||||||| || | ||||||||||||| |||||||||||||||
Sbjct 64 TGAATCTTCGTCACATTTACGAAGTTTGTAAATGGATGAAAACCGAAGCCGGTATTGAAG 123
Query 144 CCGTTGTGGAAGTGCAACGCAGCGAGAAGCTAAAGAGGCGAGCGACA-TCAAAAGGTAGG 202
||||||||||||||||||||||||||||||||||||||||||| || | |||||| |||
Sbjct 124 CCGTTGTGGAAGTGCAACGCAGCGAGAAGCTAAAGAGGCGAGCCTCAGT-AAAAGGGAGG 182
Query 203 ACGGCTGCTGAATCGGCTATGATAAGAGCGTTTAACGCTCAATTTGCTGAGTATAGCTCT 262
|||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 183 ACGGTTGCTGAATCGGCTATGATCAGAGCGTTTAACGCTCAGTTTGCTGAGTATAGCTCT 242
Query 263 GAACTAAAGATAGCTCGTGCGGTCAT-GAAGAAAGAAAGTGATACTGGTGTTCGTCTCCG 321
|| ||||||| ||||||||||| | | | ||||||| |||||||||||||||||| ||||
Sbjct 243 GAGCTAAAGAAAGCTCGTGCGG-CTTTGGAGAAAGAGAGTGATACTGGTGTTCGTATCCG 301
Query 322 AGACAAGTACTGGCCAGTTTCTGCATTCGGTGTAGCCATCAATGTT-TTGCACGAAGAGG 380
|||||||||||||||||||||| |||||| ||||||||||||| || || || ||||||
Sbjct 302 AGACAAGTACTGGCCAGTTTCTACATTCGATGTAGCCATCAATATTATT-CATGAAGAGT 360
Query 381 CAGTTCTTGATTTTTGTAGGAAAGAGGGAGTGAAATGCGGTTTGTACAAGTATGTTGAAG 440
||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct 361 CAGTTCTTGATTTTTGTAGAAAAGAGGAAGTGAAATGTGGTTTATACAAGTATGTTGAAG 420
Query 441 GACTGATTGAACGCAAGACGGTGAGTTTTGCTTTACGCGAAGCCGATAATCTTCGGGCTG 500
|| |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GATTGATTGAACGTAAAACGGTGAGTTTTGCTTTACGTGAAGCCGATAATCTTCGGGCTG 480
Query 501 TTCTCAAGGAAATGGAAAGGTTTGAAGTTCCGGTTTCGTCTATGGATGGAAATTGTCTTG 560
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 481 TTCTCAAGGAAATGGAAAGTTTTGAAGTTCCAGTTTCGTCCATGGATGGAAATTGTCTTG 540
Query 561 TT-GATAATAAGAGGAAAGATATTGGATCTGTTCTTGGTCATGGTGGAGAAACATCATCT 619
|| | | ||||||| |||||||||||||| || |||||||||||||||||| |||| |||
Sbjct 541 TTAG-TGATAAGAGCAAAGATATTGGATCGGTGCTTGGTCATGGTGGAGAATCATCGTCT 599
Query 620 AAGA-AGAAGAGACGTCTTACTCGTAAGAAG 649
|||| ||| ||||||||||||| ||| ||||
Sbjct 600 AAGAGAGA-GAGACGTCTTACTTGTACGAAG 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5