BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49120.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474053 jgi|Araly1|474053|fgenesh2_kg.1__4007__AT1G49120.1 1258 0.0
Ahg493126 jgi|Araly1|493126|fgenesh2_kg.7__2559__AT4G17500.1 62.1 8e-09
> Ahg474053 jgi|Araly1|474053|fgenesh2_kg.1__4007__AT1G49120.1
Length=960
Score = 1258 bits (681), Expect = 0.0
Identities = 897/995 (90%), Gaps = 40/995 (4%)
Strand=Plus/Plus
Query 1 ATGATCAGTTTCAGAGAAGAGAACATCGATCTCAACTTGATTAAAACAATTAGTGTAATC 60
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||
Sbjct 1 ATGATCAGTTTCAGAGAAGAGACCATCGATCTCAACTTGATTAAAACAGTTAATATAATC 60
Query 61 TGTAATGATCCAGACGCCACCGATTCCTCTAGCGACGATGAATCTATCTCCGGCAATAAT 120
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTAATGATCCCGACGCTACTGATTCCTCTAGCGACGATGAATCTATCTCCGGCAATAAT 120
Query 121 CCTCGCCGTCAGATCAAACCAAAACCACCGAAA-CGTTACGTCTCAAAGATCTGTGTCCC 179
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 121 CCTCGCCGTCAGATCAAACCAAAGCCACC-AAAGCGTTACGTCTCAAAGATCTGTGTCCC 179
Query 180 GACGCTGATCAAAAGGTATGAGAACGTTTCGAATTCTACAGGGAATAAAGCAGCCGGAAA 239
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 GACGCTGATCAAAAGGTACGAGAACGTTTCGAATTCTACAGGGAATAAAGTAGCCGGAAA 239
Query 240 CCGGAAAACGTCGTCGGGTTTCAAAGGCGTACGACGGAGGCCGTGGGGGAAATTTGCGGC 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCGGAAATCGTCGTCGGGTTTCAAAGGCGTACGACGGAGGCCGTGGGGGAAATTTGCGGC 299
Query 300 GGAGATAAGAAATCCGTTTGAGAAGAAGAGAAAGTGGCTTGGAACGTTTCCTACTGAAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGAGATAAGAAATCCGTTTGAGAAGAAGAGAAAGTGGCTTGGAACGTTTCCTACTGAAGA 359
Query 360 AGAAGCAGCAGAAGCTTACCAAAAGA-GTAAAAGAGAGTTTGATGAACGATTGGGTTTAG 418
|||||||||||| ||||| || | || ||||||||||||||||||||||||| |||||||
Sbjct 360 AGAAGCAGCAGAGGCTTATCAGA-GAAGTAAAAGAGAGTTTGATGAACGATTAGGTTTAG 418
Query 419 TTAAACAGGAAAAAGACCTAGTAGATTTGACCAAGCCGTGCGGTGTACGTAAACCAGAAG 478
|||||| ||||| ||| | ||| | ||| ||| || |||||||||||||| ||||
Sbjct 419 TTAAACCGGAAAGAGA--T-GTA-A-----CCAGGCCTTGTGGTGTACGTAAACCTGAAG 469
Query 479 AGAAGGAAGTTACTGAGAAGTCGAATTGCAAAAAGGTAAATAAGAGAATTGTTACTGATC 538
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 470 AGAAGGAAGTTACTGACAAGTCAAAATGCAAAAAGGTAAATAAGAGAATTGTTACTGA-- 527
Query 539 AGAAGCCATTTGGTTGTGGTTATAACGCTGATCATGAAGAAGAGGGAGTGATTAGTAAAA 598
|| |||||| |||||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct 528 -GACGCCATTCGGTTGTGGTTATAATGCTGAT---GAAGAAGAGGGAGTGATTGGTAAAA 583
Query 599 TGTTGGAAGATCCGTTGATGACATCGTCAATTGCTGATATTTTTGGTGATTCGGCTGTTG 658
||||||||||||||||||||||||| || ||||| ||||||||| ||||||||| |||||
Sbjct 584 TGTTGGAAGATCCGTTGATGACATCCTCGATTGCGGATATTTTTCGTGATTCGGTTGTTG 643
Query 659 AAGCAAATGATATTTGGGTGGATTACAATTCAGTGGAATTTATTTCCATTGTAGATGATT 718
||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 644 AAGCAGATGATATTTGGGTGGATTACAATTCAGTGGAATTTAATTCGATTTTAGATGATC 703
Query 719 TCAAGTTTGATTTTGTGGAGAAT---GATAGAGTAGGAAAGGAGAAAACATTTGGATTTA 775
| ||||| ||||||||||||||| ||||| ||||| | |||||||||||| |||||||
Sbjct 704 TAAAGTTAGATTTTGTGGAGAATATTGATAGTGTAGGCATGGAGAAAACATTCGGATTTA 763
Query 776 AGATTGGGGATCACACTAAAGTTAATCAACATGCCAAAATCGTATCGACCAATGGGGACT 835
||||||||||| ||||||| ||||||||||| | |||||||||||||| | || |
Sbjct 764 AGATTGGGGATAACACTAAGGTTAATCAACACACGAAAATCGTATCGACGATTG----C- 818
Query 836 TATTCGTCGATGATTTACTTGATTTTGATCCGTTGATAGATGATTTTAAGTTAGAAGATT 895
| | || |||| | || ||||||||| ||||||||||||||||||||||||
Sbjct 819 -A---G---AT-ATTTTC--GAC---GATCCGTTGTTAGATGATTTTAAGTTAGAAGATT 865
Query 896 TTCCTATGGATGATCTTGGATTATTAGGAGATCCAGAGGATGATGATTTTAGTTGGTTTA 955
|||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 866 TTCCGATGGATGATTTTGGATTATTAGGAGATCCAGAGGATGATGATTATAGTTGGTTTA 925
Query 956 ATGGTACTACTGATTGGATCGATAAGTTTTTATGA 990
||||||||||||||||||||||||||| |||||||
Sbjct 926 ATGGTACTACTGATTGGATCGATAAGTGTTTATGA 960
> Ahg493126 jgi|Araly1|493126|fgenesh2_kg.7__2559__AT4G17500.1
Length=998
Score = 62.1 bits (33), Expect = 8e-09
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 277 AGGCCGTGGGGGAAATTTGCGGCGGAGATAAGAAATCCG 315
||||||||||||||||||||||||||||| ||| |||||
Sbjct 528 AGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGATCCG 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5