BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49130.1
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923270 jgi|Araly1|923270|scaffold_104551.1 1232 0.0
> Ahg923270 jgi|Araly1|923270|scaffold_104551.1
Length=1023
Score = 1232 bits (667), Expect = 0.0
Identities = 897/999 (90%), Gaps = 51/999 (5%)
Strand=Plus/Plus
Query 57 CAGAAA--AAATTATGATTTCAAAGTACCAAGA-AGATGTCAAGCAGCCACGAGCTTGCG 113
|||||| |||||||||||| || ||||| | ||||||||||||| |||||||||||
Sbjct 10 CAGAAATTAAATTATGATTTGGGAGAACCAA-ACTGATGTCAAGCAGCAACGAGCTTGCG 68
Query 114 AACTTTGTCTGAACAAACACGCAGTTTGGTACTGTGCCTCCGATGATGCTTTCTTGTGCC 173
|||| ||| |||||||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 69 AACTGTGTAAGAACAAACACGCGGTTTGGTATTGTGCTTCGGATGATGCTTTCTTGTGCC 128
Query 174 ATGTTTGTGATGAATCAGTGCATTCTGCAAACCATGTAGCGACAAAACACGAGAGAGTTT 233
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 129 ATGTTTGTGATGAATCAGTGCATTCTGCAAACCATGTGGCGACAAAACACGAGAGAGTTT 188
Query 234 GTCTTAGAACAAACGAGATATCGAATGATGTGCGTGGGGGAACAACAT-TAACCTCGGTT 292
||||||||||||| ||||||||||||||||||| | | |||||||||| |||| |||||
Sbjct 189 GTCTTAGAACAAATGAGATATCGAATGATGTGCTTCGAGGAACAACATCAAACC-CGGTT 247
Query 293 TGGCACAGCGGGTTTC-GAAGAAAAGCAAGAACTCCTAGATCTCGGTATGAGAAAAAGCC 351
|||||||||||| ||| |||||||||||||||| |||||| | |||| ||| ||||||||
Sbjct 248 TGGCACAGCGGG-TTCAGAAGAAAAGCAAGAACACCTAGAGCCCGGTTTGATAAAAAGCC 306
Query 352 ACAACAAAAGATAGATGATGAGAGAAGAAGGGAAGATCCTCGTGTTCCCGAGATTGGAGG 411
|||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 307 ACAAGAAAAGATAGATGATGAGAAAAGAAGAGAAGATCCTCGTGTTCCCGAGATTGGAGG 366
Query 412 CGAAGTGATGTTTTTCATACCAGAAGC-AAATGATGATGATATGACTTCTCTTGTGCCAG 470
||||||||||| ||||||||| ||| | ||||||||||||||||||||| ||||||||||
Sbjct 367 CGAAGTGATGTGTTTCATACCGGAA-CTAAATGATGATGATATGACTTCACTTGTGCCAG 425
Query 471 AGTTTGAGGGATTCACAGAGATGGGATTCTTCTTGAGCAACCACAATGGTACTGAAGAAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AGTTTGAGGGATTCACAGAGATGGGATTCTTCTTGAGCAACCACAATGGTACTGAAGAAA 485
Query 531 CAACGAAACAATTCAACTTTGAAGAAGAAGCTGACACAATGGAGGATCTATATTACAATG 590
||||||||||||||||||||||||||||| |||| ||| ||||||||| | ||||||||
Sbjct 486 CAACGAAACAATTCAACTTTGAAGAAGAAACTGATGCAAAGGAGGATCTCTGTTACAATG 545
Query 591 GAGAAGA--A-GAAGA--T-AAAACTGATGGAGCTGAAGCATGTCCTG-GACAATATTTG 643
||||||| | ||||| | |||||||||||||||||||||||||||| | |||| ||||
Sbjct 546 GAGAAGATGAAGAAGAAGTTAAAACTGATGGAGCTGAAGCATGTCCTGAG-CAATCTTTG 604
Query 644 ATGAGCTGCAAGAAAGATTACGACAATGTCATAACGGTTTCAGAAAAGACAGAAGAAATT 703
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 605 ATGAGCTGCAAGAAGGATTACGACAATGTCATAACGGTTTCAGCAAAGACAGAAGAAATT 664
Query 704 GAAGATTGTTATGAGAATAATGCAAGGCATAG-A-C-TG--A---A---T---T-ACGAA 748
|||||||||||||||||||| |||||||| || | | || | | | | |||||
Sbjct 665 GAAGATTGTTATGAGAATAAAGCAAGGCAGAGGAACATGTTACTTAAACTCAATTACGAA 724
Query 749 AATGTTATAGCAGCTTGGGATAAACAAGAATCTCCTAGAGATGTAA---AA---AACAAC 802
||||||||||||||||||||||||||||||||||| ||| | || || ||||||
Sbjct 725 AATGTTATAGCAGCTTGGGATAAACAAGAATCTCCAAGAAACCAAACTGAATTTAACAAC 784
Query 803 ACAAGTAGCTTCCAGCTAGTTCCTCCA--G--GG--ATagaggagaagagagtaag-aa- 854
||||||| ||| ||| ||||||||||| | || |||||||||||||||||||| ||
Sbjct 785 ACAAGTAACTTGCAGTTAGTTCCTCCATTGCAGGGGATAGAGGAGAAGAGAGTAAGCAAC 844
Query 855 -g---tgagagagaagctagagtttggagatacagagataaaaggaagaaTCGTTTGTTC 910
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 AGAAGTGAGAGAGAAGCTAGAGTTTGGAGATACAGAGATAAAAGGAAGAATCGTTTGTTC 904
Query 911 GAGAAGAAGATAAGGTACGAGGTTAGAAAGGTTAACGCCGACAAAAGGCCGAGAATGAAA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GAGAAGAAGATAAGGTACGAGGTTAGAAAGGTTAACGCCGACAAAAGGCCGAGAATGAAA 964
Query 971 GGTCGATTTGTCCGACGATCTTTAGCCATCGACTCTTAG 1009
|||| |||||||||| |||||||||||||||||||||||
Sbjct 965 GGTCAATTTGTCCGAAGATCTTTAGCCATCGACTCTTAG 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37551073245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5