BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49140.1
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474056 jgi|Araly1|474056|fgenesh2_kg.1__4010__AT1G49140.1 761 0.0
Ahg479342 jgi|Araly1|479342|fgenesh2_kg.3__2043__AT3G18410.1 390 5e-108
> Ahg474056 jgi|Araly1|474056|fgenesh2_kg.1__4010__AT1G49140.1
Length=461
Score = 761 bits (412), Expect = 0.0
Identities = 445/461 (97%), Gaps = 1/461 (0%)
Strand=Plus/Plus
Query 14 AGAAATCAAAAATCCGATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCC 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAATCAAAAATCCGATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCC 60
Query 74 GGATGGATTCGATCCTGAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGA 133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATGGATTCGATCCTGAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGA 120
Query 134 ACACATTGTTCGTGAGAAATGGATCCATATCGAGAAGGCTAAGATCTTACGTGAGAAGGT 193
||| |||||||||||||| |||||||| |||||||||||||||||||| || ||||||||
Sbjct 121 ACATATTGTTCGTGAGAAGTGGATCCAAATCGAGAAGGCTAAGATCTTGCGCGAGAAGGT 180
Query 194 CAAATGGTGTTACCGCGTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCA 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAATGGTGTTACCGCGTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCA 240
Query 254 GCAGTATCTCGATGCCACTCGCGGCGTTGGTTGGGGCAAAGACCACCGTCCTATCTCTCT 313
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GCAGTATCTCGACGCCACTCGCGGCGTCGGTTGGGGCAAAGACCACCGTCCTATCTCTCT 300
Query 314 TCACGGTCCTAAGCCAGTAGCTGTTGAAGAAGCTGAATGA-TGTTGTGTGCGTGATTGAT 372
||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 301 CCACGGTCCTAAGCTAGTAGCTGTTGAAGAAGCTGAATAAATGTTGTGTGCGTGACTGAT 360
Query 373 CTTTGGTGAGTGAGAGCTTTGATTACCATACATGAATGGAGTCTCTGTTGCAAGTTAATG 432
||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 361 CTTAGGTGAGTGAGAGCTTTGATTACCAAACATGAATGGGGTCTCTGTTGCAAGTTAATG 420
Query 433 CTCCACATCAAGGTTGTTACTTGATTTATGCTTTTCTGTTT 473
|||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCCACATCAAGGTTGTTACTTGATTTATGCTTTTCTGTTT 461
> Ahg479342 jgi|Araly1|479342|fgenesh2_kg.3__2043__AT3G18410.1
Length=587
Score = 390 bits (211), Expect = 5e-108
Identities = 301/344 (88%), Gaps = 7/344 (2%)
Strand=Plus/Plus
Query 30 ATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCCGGATGGATTCGATCCT 89
||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 49 ATGGGAAGAAAGAAGGGATTACCGGAGTTCGAAGAGTCGGCGCCGGATGGATTTGATCCG 108
Query 90 GAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGAACACATTGTTCGTGAG 149
| ||||| || ||||||||||| |||||||| || |||||||| ||||| ||||| |||
Sbjct 109 GCCAATCCATATAAGGATCCGGTGGCGATGGTTGAAATGAGAGAGCACATCGTTCGAGAG 168
Query 150 AAATGGATCCATATCGAGAAGGCTAAGATCTTACGTGAGAAGGTCAAATGGTGTTACCGC 209
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 169 AAATGGATCCAAATCGAGAAGGCTAAGATCTTGCGTGAGAAGGTCAAATGGTGTTACCGC 228
Query 210 GTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCAGCAGTATCTCGATGCC 269
|||||||| || || || |||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 229 GTCGAAGGAGTCAATCACTACCAGAAATGTCGTCATCTTGTTCAGCAGTATCTTGATTCC 288
Query 270 ACTCGCGGCGTTGGTTGGGGCAAAG-ACCACCGTCCTATCTCTCTTCACGGTCCTAAGCC 328
||||||||||| |||||||| |||| | || |||||||| || || |||||||| || ||
Sbjct 289 ACTCGCGGCGTCGGTTGGGG-AAAGGATCATCGTCCTATTTCGCTCCACGGTCCCAAACC 347
Query 329 AGTAG-CTGTTGAAGAAGCTGAATGATGTTGTGTGCGTGATTGA 371
| || ||||||||| |||||| ||||||||||| | |||||
Sbjct 348 GG-AGGCTGTTGAAG---CTGAATAATGTTGTGTGCCTCATTGA 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22645012698
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5