BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G49150.1

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg337040 jgi|Araly1|337040|fgenesh1_pg.C_scaffold_1003605           198    2e-50


> Ahg337040 jgi|Araly1|337040|fgenesh1_pg.C_scaffold_1003605
Length=522

 Score =  198 bits (107),  Expect = 2e-50
 Identities = 166/192 (86%), Gaps = 13/192 (7%)
 Strand=Plus/Plus

Query  163  ATGGAAGAGAAGATGGATC-TGTTGATCTCATTGTTTAGGTCAAATAATGAAGTTAAAAT  221
            |||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct  163  ATGGAAGAAAAGATGGA-CATGTTGATCTCATTGGTTAGGTCAAATAATGAAGTTAAAAT  221

Query  222  TGGCTCTGTAAAGCCC-AGGCAGAGAGCATGTCTGTGGATGGATCATC-TTCTGATGAGG  279
            ||||| ||||||| || ||||||||||||||| || ||||| |||||| || |||||| |
Sbjct  222  TGGCTTTGTAAAGGCCGAGGCAGAGAGCATGTTTGAGGATGAATCATCCTT-TGATGATG  280

Query  280  AACCTTATAGCCGTTTTGGTACTCCTgtctttggtcctggtggtggtcgtggtc-ttttc  338
            |||||||||||||||||||| ||  ||||  |||||  | ||||| |  ||||| |||| 
Sbjct  281  AACCTTATAGCCGTTTTGGTCCTTTTGTCGGTGGTC--G-TGGTG-T--TGGTCCTTTT-  333

Query  339  gtcggtggtcgt  350
            ||||||||||||
Sbjct  334  GTCGGTGGTCGT  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16139814147


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5