BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49160.2
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474058 jgi|Araly1|474058|fgenesh2_kg.1__4012__AT1G49160.2 3055 0.0
Ahg318635 jgi|Araly1|318635|fgenesh1_pm.C_scaffold_3001651 1155 0.0
> Ahg474058 jgi|Araly1|474058|fgenesh2_kg.1__4012__AT1G49160.2
Length=1881
Score = 3055 bits (1654), Expect = 0.0
Identities = 1813/1889 (96%), Gaps = 14/1889 (1%)
Strand=Plus/Plus
Query 4 TTTGTGTTTCGATTGAACAACACTTTAATTATTTA-ATCTTTCCATTGTCTTTGCGTCTT 62
||||||||| |||||||||||| |||| | |||| || ||||| |||||| ||||||||
Sbjct 1 TTTGTGTTTTAATTGAACAACAC-TTAA-T-TTTATATTTTTCCCTTGTCTCTGCGTCTT 57
Query 63 CTTCGATCAATTTATCAAATTAGGGTTCCAACCttttttcttttt--tttCCCCGTTGTG 120
|||||||||||||||| |||||||||||||| ||||||||||||| ||| |||| ||
Sbjct 58 CTTCGATCAATTTATCGAATTAGGGTTCCAA-CTTTTTTCTTTTTCATTT-TTCGTTTTG 115
Query 121 TGTTAAGTCGGCGGAAAAACTTAGAACAGAACAAACCATCATTTTTCCAG--AAATTTGA 178
|||||||| |||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 116 TGTTAAGTTGGCGGATAAACTTAGAACAGAACAAACCATCATTTTTCCAGTTGATTTTGA 175
Query 179 AGAATAGATaaaaaaaGATTAATAAGATATGGAAGGTTCAGAAGATGCTTCTGCAATTGT 238
|||| || | || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 176 AGAA-AGCT-AATAAAGATTAGTAAGATATGGAAGGTTCAGAAGATGCTTCTGCAATTGT 233
Query 239 TGAACCACCTGACCCAGAAGTTCTTGAAATCGACCCAACTTGTCGATATATTCGGTACAA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AGAACCACCTGACCCAGAAGTTCTTGAAATCGACCCAACTTGTCGATATATTCGGTACAA 293
Query 299 AGAAGTAATAGGCAAAGGCGCATCCAAGACAGTTTTTAAGGGATTCGACGAAGTAGATGG 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 294 AGAAGTAATAGGCAAAGGCGCATCCAAGACAGTTTTTAAGGGATTTGACGAAGTAGATGG 353
Query 359 GATTGAAGTAGCGTGGAATCAAGTAAGGATCGACGATCTTTTGCAATCACCAGATTGTCT 418
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GATTGAAGTTGCGTGGAATCAAGTAAGGATCGACGATCTTTTGCAATCACCAGATTGTCT 413
Query 419 AGAGAGGCTATATTCCGAAGTGCGGCTTTTGAAATCTCTGAAGCATAAAAACATCATAAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 414 CGAGAGGCTATATTCCGAAGTGCGGCTTTTGAAATCTCTGAAGCATAAAAACATTATAAG 473
Query 479 GTTTTATAACTCGTGGATCGATGACAAGAACAAGACGGTTAACATAATTACCGAGTTGTT 538
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 474 GTTTTATAACTCGTGGATCGATGACAAGAACAAAACGGTTAACATAATTACCGAATTGTT 533
Query 539 CACTTCAGGAAGTCTCCGGCAGTACCGTAAGAAACATAGAAAGGTGAATATGAAGGCTGT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CACTTCAGGAAGTCTCCGGCAGTACCGTAAGAAACATAGAAAGGTGAATATGAAGGCTGT 593
Query 599 CAAGTGTTGGGCGAGACAGATTTTAACGGGATTGAAATATCTACATAGTCAAGATCCGCC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GAAGTGTTGGGCGAGACAGATTTTAACGGGATTGAAATATCTACATAGTCAAGATCCGCC 653
Query 659 GATAATACACCGAGATATCAAATGTGACAACATTTTTATCAACGGTAATCATGGAGAAGT 718
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 GATTATACACCGAGATATCAAATGTGACAACATTTTTATCAACGGTAACCATGGAGAAGT 713
Query 719 GAAAATAGGAGATCTTGGTTTAGCTACTGTCATGGAACAAGCTAATGCCAAAAGTGTGAT 778
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 714 GAAAATAGGAGATCTTGGTCTAGCTACTGTCATGGAGCAAGCTAATGCCAAAAGTGTGAT 773
Query 779 TGGAACACCGGAGTTTATGGCGCCTGAGCTTTACGATGAGAACTACAACGAGCTCGCTGA 838
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGGAACACCCGAGTTTATGGCGCCTGAGCTTTACGATGAGAACTACAACGAGCTCGCTGA 833
Query 839 TATATATTCGTTCGGGATGTGTATGTTGGAAATGGTGACTTTTGAATATCCTTATTGTGA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TATATATTCGTTCGGGATGTGTATGTTGGAAATGGTGACTTTTGAATATCCTTATTGTGA 893
Query 899 GTGTAGAAACTCTGCTCAAATCTACAAGAAAGTTTCATCGGGGATCAAACCAGCTTCACT 958
|||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 894 ATGTAGAAACTCTGCTCAAATCTACAAAAAAGTTTCATCGGGAATTAAACCAGCTTCACT 953
Query 959 ATCAAAGGTTAAAGATCCAGAGGTAATGAAATTTATCGAGAAATGTTTATTGCCAGCTTC 1018
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 954 CTCAAAGGTTAAAGATCCAGAAGTAATGAAATTTATCGAGAAATGTTTATTGCCAGCTTC 1013
Query 1019 CGAAAGGTTATCGGCAGAGGAGCTTTTATTGGATTCTTTTCTCAATGTGAACGGTTTAGT 1078
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CGAAAGGTTATCAGCGGAGGAGCTTTTATTGGATTCTTTTCTCAATGTGAACGGTTTAGT 1073
Query 1079 TATGAACAATCCATTACCGCTTCCCGACATTGTAATGCCGAAAGAAGGATCATTCGGTGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1074 TATGAACAATCCATTACCGCTTCCCGACATTGTAATGCCGAAAGAAGGATCATTCGGAGA 1133
Query 1139 ACGTTGTCTTATGTCTGAAGGACCACCTAATGCTCGGAATAGAACGATGTCAATGAATCT 1198
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1134 ACGTTGTCTTATGTCTGAAGGACCACCTAATGCTAGGAATAGACCGATGTCAATGAATCT 1193
Query 1199 TGACGAAGACAATAACCTTCCTATTGTTATTTCAAGCAACAATTCAGGAACAAACTGTAT 1258
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1194 TGACGAAGACAATAACCTTCCTATTGTTATTTCAAGCAACAATTCAGGATCAAAGTGTAT 1253
Query 1259 TGAGGTTAGACGGGCAAAGCGAGGAAACTTTTTTGTCCTTAAAGGTGAAGAGAATGATGA 1318
||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 1254 TGAGGTTAGACGGGCAAAGAGAGGCAACTTCTTTGTCCTTAAAGGTGAAGAGAATGATGA 1313
Query 1319 GAACTCTGTCTCAT-TAATTCTTCGTATAGTCGATGAAAATGGGCGTGTGAGGAACATTC 1377
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GAACTCTGTCTC-TCTAATTCTTCGTATAGTCGATGAAAATGGGCGTGTGAGGAACATTC 1372
Query 1378 ATTTTCTATTCTTTCAAGAAGGTGACACTGCTTCTAATGTATCTAGTGAGATGGTTGAAC 1437
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1373 ATTTTCTATTCTTTCAAGAAGGTGACACTGCTTCTAATGTATCGAGTGAGATGGTAGAAC 1432
Query 1438 AGCTTGAATTGACGGATAAAAACGTAAAGTTTATAGCGGAATTGATTGACGTGTTACTCG 1497
||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1433 AGCTTGAATTGACGGATCAAAACGTAAAGTTTATAGCGGAACTGATTGACGTATTACTCG 1492
Query 1498 TCAATTTGATACCGAATTGGAAAACCGATGTAGCTGTCGATCATCTAATTCATCCGCAAC 1557
|||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 1493 TCAATTTGATACCGAATTGGAAAACCGATGTAACGGTCGATCATCTTATTCATCCGCAAC 1552
Query 1558 AGAACCAGAGCTCCAAGGATAATCATCAAAACGGTGCAAGTTCTCAAGCTGGTGAATCCA 1617
|||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||
Sbjct 1553 AGAACCAGAGCTCCAAGGATAACCATCAAAACGGTGCAAATTCCCAAGATGGTGAATCCA 1612
Query 1618 TTAGCCACTCTTTGTCCTCTGATTATTGCCCACGATCCGATGATGAGGCAAACCCGACCG 1677
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1613 TTAGTCACTCTTTGTCCTCTGATTATTGCCCACGATCCGATGATGAAGCAAACCCGACCG 1672
Query 1678 TAGCTGCAACAACagaagatcaagaagcagagaaaccaggaagcttggaggaagaagaag 1737
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 TAGCTGCAACAAGAGAAGATCAAGAAGCAGAGAAACCAGGAAGCTTGGAGGAAGAAGAAG 1732
Query 1738 aagatgagaggttaaaagaggagttagaaaagatagaagaacggttcagagaagagatga 1797
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1733 AAGATGAGAGGTTAAAAGAGGAGCTAGAAAAGATAGAAGAACGGTTCAGAGAAGAGATGA 1792
Query 1798 aagagataacgaggaaaagagaagaagCAACAATGGAGACCAAAAATAGATTTTTCGAGA 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 AAGAGATAACGAGGAAAAGAGAAGAAGCAACAATGGAGACCAAAAATAGATTTTTCGAGA 1852
Query 1858 AGAAGATGCAACAAGTTGAGTAAAGTAAA 1886
||||||||||||||||||||||| |||||
Sbjct 1853 AGAAGATGCAACAAGTTGAGTAACGTAAA 1881
> Ahg318635 jgi|Araly1|318635|fgenesh1_pm.C_scaffold_3001651
Length=1716
Score = 1155 bits (625), Expect = 0.0
Identities = 1155/1410 (82%), Gaps = 40/1410 (3%)
Strand=Plus/Plus
Query 207 ATGGAAGGTTCAGAAGATGCTTCTGCAATTGTTGAACCACCTGACCCAGAAGTTCTTGAA 266
||||||||| |||| ||||||| |||| || || || |||||||| ||||| || |||
Sbjct 1 ATGGAAGGTACAGACGATGCTTGTGCACTTCAAGAGCCTCCTGACCCCGAAGTGCTCGAA 60
Query 267 ATCGACCCAACTTGTCGATATATTCGGTACAAAGAAGTAATAGGCAAAGGCGCATCCAAG 326
| || ||||||| ||||||||| ||||| || || || || || |||||||||| ||||
Sbjct 61 GTTGATCCAACTTTTCGATATATACGGTATAAGGAGGTTATTGGAAAAGGCGCATTCAAG 120
Query 327 AC-----A----GTT--TT-TAAGGGATTCGACGAAGTAGATGGGATTGAAGTAGCGTGG 374
|| | || || ||||| |||||| |||||||||||||||||||| || |||
Sbjct 121 ACTGTGTATCCTTTTCGTTATAAGGCATTCGATGAAGTAGATGGGATTGAAGTCGCTTGG 180
Query 375 AATCAAGTAAGGATCGACGATCTTTTGCAATCACCAG-ATTGTCTAGAGAGGCTATATTC 433
|| |||||| | || || ||| ||||||| ||||| | |||| || |||||||| |||||
Sbjct 181 AACCAAGTACGAATAGATGATGTTTTGCAGTCACC-GAATTGCCTTGAGAGGCTGTATTC 239
Query 434 CGAAGTGCGGCTTTTGAAATC-TCTGAAGCATAAAAACATCATAAGGTTTTATAACTCGT 492
|||||||| || |||||||| | ||||||| || || || || ||||| ||||| || |
Sbjct 240 TGAAGTGCGTCTGTTGAAATCAT-TGAAGCACAATAATATTATTAGGTTCTATAATTCAT 298
Query 493 GGATCGATGACAAGAACAAGACGGTTAACATAATTACCGAGTTGTTCACTTCAGGAAGTC 552
|||||||||| ||||||||||| ||||||||||| || ||| | ||||||||||| || |
Sbjct 299 GGATCGATGATAAGAACAAGACAGTTAACATAATAACTGAGCTATTCACTTCAGGGAGCC 358
Query 553 TCCGGCAGTACCGTAAGAAACATAGAAAGGTGAATATGAAGGCTGTCAAGTGTTGGGCGA 612
|||| || ||||| |||||||| || |||||||| |||||||| || ||| ||||||||
Sbjct 359 TCCGACACTACCGCAAGAAACACAGGAAGGTGAACATGAAGGCCGTGAAGAATTGGGCGA 418
Query 613 GACAGATTTTAACGGGATTGAAATATCTACATAGTCAAGATCCGCCGATAATACACCGAG 672
| |||||||||| ||| |||| |||||| || ||||||| || ||||| ||||| || |
Sbjct 419 GGCAGATTTTAATGGGTTTGAGATATCTTCACGGTCAAGAGCCACCGATTATACATCGGG 478
Query 673 ATATCAAATGTGACAACATTTTTATCAACGGTAATCATGGAGAAGTGAAAATAGGAGATC 732
|| ||||||| || |||||||||||||| || || |||||||||||||||||||||||||
Sbjct 479 ATCTCAAATGCGATAACATTTTTATCAATGGAAACCATGGAGAAGTGAAAATAGGAGATC 538
Query 733 TTGGTTTAGCTACTGTCATGGAACAAGCTAATGCCAAAAGTGTGATTGGAACACCGGAGT 792
||||| |||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||
Sbjct 539 TTGGTCTAGCCACTGTCATGGAGCAAGCTAACGCCAAAAGTGTTATTGGAACCCCGGAGT 598
Query 793 TTATGGCGCCTGAGCTTTACGATGAGAACTACAACGAGCTCGCTGATATATATTCGTTCG 852
||||||| || |||||||||||||||||||||||||| | |||||||| ||||| || |
Sbjct 599 TTATGGCACCCGAGCTTTACGATGAGAACTACAACGAATTGGCTGATATTTATTCATTTG 658
Query 853 GGATGTGTATGTTGGAAATGGTGACTTTTGAATATCCTTATTGTGAGTGTAGAAACTCTG 912
|||||||||||||||| |||||||| ||||||||||| || ||||| || | ||||||||
Sbjct 659 GGATGTGTATGTTGGAGATGGTGACATTTGAATATCCCTACTGTGAATGCAAAAACTCTG 718
Query 913 CTCAAATCTACAAGAAAGTTTCATCGGGGATCAAACCAGCTTCACTATCAAAGGTTAAAG 972
|||| || |||||||| ||||||||||| || ||||| |||||||| || | ||||||||
Sbjct 719 CTCAGATATACAAGAAGGTTTCATCGGGAATAAAACCTGCTTCACTCTCCAGGGTTAAAG 778
Query 973 ATCCAGAGGTAATGAA-A-TTTATCGAGAAATGTTTA-TTGCCAGCTTCCGAAAGGTTAT 1029
| ||||| |||| || | ||||| |||||||||||| || || || ||||| ||| | |
Sbjct 779 ACCCAGAAGTAA--AACAGTTTATTGAGAAATGTTTACTT-CCTGCATCCGAGAGGCTGT 835
Query 1030 CGGCAGAGGAGCTTTTATTGGATTCTTTTCT-CAATGTGAACGGTTTAGTTATGAACAAT 1088
| ||| | |||||||||||||| ||||||| ||| | || |||||| |||||||||
Sbjct 836 CAGCAAAAGAGCTTTTATTGGACCCTTTTCTGCAAC-TAAATGGTTTAACAATGAACAAT 894
Query 1089 CCATTACCGCTTCCCGACATTGTAATGCCGAAAGAAGGATCATTCGGTGAACGTTGTCTT 1148
|| || ||||||||||||||||||||||| |||||||| |||| || || ||||| |||
Sbjct 895 CCTTTGCCGCTTCCCGACATTGTAATGCCCAAAGAAGGCGCATTTGGGGACCGTTGCCTT 954
Query 1149 ATGTCTGAAGGACCACCTA-ATGCTCGGAATAG-A-ACG-ATGTCAAT-GAATCTTGACG 1203
||||||||||| || |||| | | ||| ||| | || ||||| || || ||| || |
Sbjct 955 ATGTCTGAAGGCCCTCCTACAA-CACGGCGTAGTAGACCCATGTCTATAGA-TCTCGATG 1012
Query 1204 AAGACAATAACCTTCCTATTGTTA-TTTCAAGCAACAATTCAGGAACAAACTGTATTGAG 1262
|||||| |||||| |||||||||| ||| | || ||||||||||| | | |||||||||
Sbjct 1013 AAGACAGTAACCTGCCTATTGTTACTTTTA-GCGACAATTCAGGATCCAGGTGTATTGAG 1071
Query 1263 GTTAGACGGGCAAAGCGAGGAAACTTT-TTTGTCCTTAAAGGTGAAGAGAATGATGAGAA 1321
|||||||| |||||| ||||||| ||| |||||||| || |||||||| ||||||||| |
Sbjct 1072 GTTAGACGCGCAAAGAGAGGAAA-TTTCTTTGTCCTCAAGGGTGAAGAAAATGATGAGCA 1130
Query 1322 CTCTGTCTCATTAATTCTTCGTATAGTCGATGAAAATGGGCGTGTGAGGAACATTCATTT 1381
||||| || |||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1131 GTCTGTGTCCCTAATTCTTCGTATAGTAGATGAGAACGGGCGTGTGAGGAACATTCATTT 1190
Query 1382 TCTATTCTTTCAAGAAGGTGACACTGCTTCTAATGTATCTAGTGAGATGGTTGAACAGCT 1441
|| |||| |||||||||||||||||||||||| || || |||||||||||||| || ||
Sbjct 1191 CCTGTTCTATCAAGAAGGTGACACTGCTTCTAAGGTGTCGAGTGAGATGGTTGAGCAACT 1250
Query 1442 TGAATTGACGGATAAAAACGTAAAGTTTATAGCGGAATTGATTGACGTGTTACTCGTCAA 1501
|| || || || | ||||| | ||||||||| || | ||||| | ||||||||||
Sbjct 1251 CGAGTTAACTGACCAGAACGTCACGTTTATAGCCGAGCTAATTGATATACTACTCGTCAA 1310
Query 1502 TTTGATACCGAATTGGAAAACCGATGT-AGCTGTCGATCATCTAATTCATCCGCAACAGA 1560
||||||| | |||||||| ||||| | | ||||||||||| || ||| |||||| ||
Sbjct 1311 CATGATACCCACCTGGAAAACTGATGTCA-CAGTCGATCATCTCATCCATTCGCAACTGA 1369
Query 1561 ACCAGAGCTCCAAGGATAATCATCAAAACG 1590
| |||| ||| ||| | | |||||| ||||
Sbjct 1370 ATCAGAACTC-AAG-A-AGTCATCATAACG 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77056565635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5