BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G49170.1

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474060 jgi|Araly1|474060|fgenesh2_kg.1__4014__AT1G49170.1         784    0.0  


> Ahg474060 jgi|Araly1|474060|fgenesh2_kg.1__4014__AT1G49170.1
Length=546

 Score =  784 bits (424),  Expect = 0.0
 Identities = 473/497 (95%), Gaps = 2/497 (0%)
 Strand=Plus/Plus

Query  1    AAAACTAAAATGGCTCCGACGAAGAAAGGAAAGAAGACCAAATCGGCGGCGGAATCAACG  60
            |||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct  1    AAAACTAAAATGGCTCCGACGAAGAAAGGAAAGAAGACCAAAGCGTCGGCAGAATCAACG  60

Query  61   ACGGTCACAGAATCTTCAAGCTTTCCGACGTGTTTGCGTCTCCTTACACCTTCCTCCGTC  120
            |||||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||
Sbjct  61   ACGGTCACAGAATCGTCGATCTTTCCGGCGTGTTTGCGTCTCCTTACACCTTCCTCCGTC  120

Query  121  GCTATCACCATCCATGCGAAGCCAGGTTCCAAAGCCGCCTCCATCACCGATGTGAGCGAC  180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCTATCACCATTCATGCGAAGCCAGGTTCCAAAGCCGCCTCCATCACCGATGTGAGCGAC  180

Query  181  GAAGCGGTAGGCGTTCAAATCGACGCGCCGGCTAGAGATGGTGAAGCTAACGCAGCTCTT  240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  181  GAAGCGGTAGGCGTTCAAATCGACGCTCCGGCTAGAGATGGTGAAGCTAACGCTGCTCTT  240

Query  241  CTCGAGTACATGAGCTCTGTATTGGGGGTGAAAAGAAGACAAGTCTCTCTCGGTTCGGGA  300
            ||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  241  CTCGAGTTCATTAGCTCTGTATTGGGGGTGAAAAGAAGACAAGTCTCACTTGGTTCGGGA  300

Query  301  TCGAAGTCTCGAGATAAAGTTGTGATTGTTGAGGATATGACCCAACAGAGTGTTTTTCAA  360
            || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  301  TCTAAGTCTCGAGATAAAGTTGTGATTGTTGAGGATATGACCCAACAAAGCGTTTTTCAA  360

Query  361  GCTTTGTCCCAAGCATCAAAACCTACCTAAAGATCTCCAAGCCTGTAACTAACTATATGG  420
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  361  GCTTTGTCCCAAGCATCAAAACCTACCTAAAGATCCCCAAGCCTATAACTAACTATATGG  420

Query  421  AG-AAACTAAATCATCAAAAGCTAAATGGTTCATGTTCACTTAAGGTACGAATGGTTTGA  479
            || |||| ||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct  421  AGGAAACAAAA-CATGAAAAGCTAAATGCTTCATGTTCACTTAAGGTACGAATGGTTTGA  479

Query  480  AGAGTTTCAGGATTTGT  496
            |||||||||||||||||
Sbjct  480  AGAGTTTCAGGATTTGT  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25161125220


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5