BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49180.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314341 jgi|Araly1|314341|fgenesh1_pm.C_scaffold_1003121 1182 0.0
> Ahg314341 jgi|Araly1|314341|fgenesh1_pm.C_scaffold_1003121
Length=801
Score = 1182 bits (640), Expect = 0.0
Identities = 713/749 (95%), Gaps = 2/749 (0%)
Strand=Plus/Plus
Query 89 ATGATGCTTGATGATTACATAGCGAAATCGAAGCTCAGTGAGAGTTTAACCTCTACGGTT 148
|||||||| | || |||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 1 ATGATGCTGGGGGAGTACACAGCGAAATCGAAGCTCAGTGAGAGTTCAACATCTACGGTT 60
Query 149 TGGTTAGCGAAGCACAAGTTAACCGGCGAAGAAGCAGTGATGAAGTGTTTCGACCTCTCG 208
||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 61 TGGCTAGCGAAGCACAAGTTAACCGGAGAAGAAGCAGTGATGAAGTGTTTCAATCTCTCG 120
Query 209 AAGCTCAATCGCAATCTCCGAGA-CTGTTTAAACAACGAACTGGAGTTTCTATCTTCTGT 267
|| |||||||||||||||||| | |||||||||||||||||| |||||||||||||| ||
Sbjct 121 AAACTCAATCGCAATCTCCGA-ACCTGTTTAAACAACGAACTCGAGTTTCTATCTTCCGT 179
Query 268 TGATCATCCCAATATCATTCGTCTCCTCCATGTTTCTCAAGATGATGATTTTCTCGTTAT 327
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 180 TGATCATCCCAATATCATTCGTCTCCTCCATGTTTTTCAAGATGAGGATTTTCTCGTTAT 239
Query 328 GGTTTTGGAATATTGTGATGGAGGAACTTTATCATCGTATATTCAACGTTATGGTAGAGT 387
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 GGTTATGGAATATTGTGATGGAGGAACTTTATCATCGTATATTCAACGTTATGGGAGAGT 299
Query 388 TGAAGAAGATATCGCCAAGAGATTTATGAAGCAAATTGGAGCTGGTTTGGAAATTATTCA 447
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 TGAAGAAGATATTGCCAAGAGATTTTTGAAGCAAATTGGAGCTGGTTTGGAAATTATTCA 359
Query 448 TGATAATCACATTATCCATAGAGACTTGAAACCTGAGAATATTTTAATTGACGGATCTGG 507
|||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 360 TGATAATCACATCATCCATAGAGACTTGAAACCTGAGAATATTTTACTTGTTGGATCTGG 419
Query 508 TGATGATTTGGTGTTGAAGATTGCCGATTTTAGTCTTGCAAGAAAACTACATCCGGGCAA 567
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 420 TGATGATTTGGTGTTGAAGATTGCTGATTTTAGTCTTGCAAGAAAACTACTTCCGGGAAA 479
Query 568 GTATCTTGAAACAGTGTGTGGTTCTCCGTTTTACATGGCTCCTGAAGTTCTTCAGTTTCA 627
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTATCTTGAGACGGTGTGTGGTTCTCCGTTTTACATGGCTCCTGAAGTTCTTCAGTTTCA 539
Query 628 GAGATACAATGAAAAGGCTGATATGTGGAGTGTAGGAGCAATCCTTTTCGAGCTACTTCA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGATACAATGAAAAGGCTGATATGTGGAGTGTAGGAGCAATCCTTTTCGAGCTACTTCA 599
Query 688 CGGGTATCCACCATTCCGTGGTAATAACAATGTTCAGGTTCTAAGGAACATCAAATCTAG 747
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGGGTATCCACCATTCCGCGGTAATAACAATGTTCAGGTTCTAAGGAACATCAAATCTAG 659
Query 748 TACAGCTCTTCCATTCTCTCGGCTTATTCTTCAACAGATGCATCCTGATTGCATCGACGT 807
|||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 TACATCTCTTCCCTTCTCTCGGCTGATTCTTCAACAGATGCATCCTGATTGCATCGACGT 719
Query 808 CTGCTCAAGATTGCTTTCTATTAACCCAG 836
||| |||||||||||||||||||||||||
Sbjct 720 CTGTTCAAGATTGCTTTCTATTAACCCAG 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5