BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49190.2 Length=2128 Score E Sequences producing significant alignments: (Bits) Value Ahg474061 jgi|Araly1|474061|fgenesh2_kg.1__4015__AT1G49190.1 1206 0.0 > Ahg474061 jgi|Araly1|474061|fgenesh2_kg.1__4015__AT1G49190.1 Length=1593 Score = 1206 bits (653), Expect = 0.0 Identities = 823/905 (91%), Gaps = 12/905 (1%) Strand=Plus/Plus Query 76 ATGTTGGTGGGAAAGATAAGTGGATATGAAGATAATACTCGCTCTTTGGAGCGAGAAACA 135 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGTTGGTAGGAAAGATAAGTGGATATGAAGATAATACTCGTTCTTTGGAGCGAGAAACA 60 Query 136 TCTGAAATCACTTCTCTTCTCAGCCAATTTCCGGGGAATACTAATGTCCTTGTTGTTGAC 195 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 61 TCTGAAATCACTTCTCTTCTCAGCCAATTTCCAGGGAATACTAATGTTCTTGTTGTTGAC 120 Query 196 ACCAATTTCACCACTCTACTCAACATGAAACAAATCATGAAACAATACGCTTATCAAGTG 255 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 121 ACCAATTTCACCACTCTACTCAATATGAAACAAATCATGAAACAATACGCCTATCAAGTG 180 Query 256 TCTATTGAGACAGATGCAGAAAAAGCTCTTGCGTTTTTGACAAGCTGCAAACATGAAATC 315 |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 181 ACTATTGAGACAGATGCCGAAAAAGCTCTTGCGTATTTGACAAGCTGCAAACATGAAATT 240 Query 316 AATATTGTGATTTGGGATTTTCATATGCCTGGAATTGATGGACTTCAAGCTCTCAAGAGC 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AATATTGTGATTTGGGATTTTCATATGCCTGGAATTGATGGACTTCAAGCTCTCAAGAGC 300 Query 376 ATTACTTCAAAGTTGGATTTACCTGTAGTGATTATGTCTGATGATAATCAAACGGAATCT 435 ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 301 ATTGGTTCAAAGATGGATTTACCTGTAGTGATTATGTCTGATGATAATCAAACAGAATCG 360 Query 436 GTGATGAAAGCAACATTTTACGGTGCTTGTGACTATGTTGTGAAACCGGTTAAAGAAGAG 495 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTGATGAAAGCAACAATAAACGGTGCTTGTGACTATGTTGTGAAACCGGTTAAAGAAGAG 420 Query 496 GTAATGGCCAATATATGGCAACACATTGTACGGAAGAGGCTGATCTTTAAACCGGATGTT 555 ||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||| Sbjct 421 GTAATAGCCAATATATGGCAACACATTGTACGGAAGATACTGATGTCTAAACCGGATGTA 480 Query 556 GCTCCACCGGTTCAATCAGATCCGGCTC-GCTCTGACCGTTTAGACCAAGTC-AA-A--- 609 | |||||||||||||||||||| ||||| | |||||| |||||||||||| | || | Sbjct 481 GTTCCACCGGTTCAATCAGATCTGGCTCAG-TCTGACGGTTTAGACCAAGGCCAAGACAA 539 Query 610 -GCTGATTTCAAGATCGTAGAAGATGAACCAATA-ATCAATGAGACACCGCTGATCACAT 667 |||||||||||||||||||| || ||||||| | |||||||||| ||||||||||||| Sbjct 540 AGCTGATTTCAAGATCGTAGACGAAGAACCAA-ACATCAATGAGAAACCGCTGATCACAC 598 Query 668 GGACCGAAGAAATTCAACCGGTTCAGTCAGATCTGGTTCAAGCCAACAAGTTCGACCAAG 727 ||||||||||||||||||||||||| |||||||||||||||| | || || | | |||| Sbjct 599 GGACCGAAGAAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCGACGAGGTAGGCCAAC 658 Query 728 TGAATGGCTATTCCCCAATCATGAACCAAGATAACATGTTCAACAAAGCACCACCTAAAC 787 | |||| ||||||| |||||||||||||||||||||||||||||||||| || | |||| Sbjct 659 TTAATGACTATTCCAAAATCATGAACCAAGATAACATGTTCAACAAAGCAGCAACGAAAC 718 Query 788 CGCGAATGACGTGGACAGAAGTTATTCAACCGGTTCAATCAAATCTGGTTCAAA-CAAAA 846 |||| |||| ||||| | ||| |||||||||||||||||| ||||||||||| ||| | Sbjct 719 CGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCAACA 778 Query 847 GAGTTCGGCCAACTCAATGACTATTCCCAAATCATGAACCAAGATAGCATGTACAACAAA 906 |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 779 -AGTTCGACCAACTCAATGACTATTCCCAAATCATGAACCAAGATAACATGTTCAACAAA 837 Query 907 GCAGCAACCAAACCACAATTGACGTGGACCGAAGAAATTCAACCGGTTCAATCAGGTCTG 966 ||||||| ||||| | | |||| |||||||| | | ||||||||||||||||| |||| Sbjct 838 GCAGCAAAGAAACCGCGACTGACATGGACCGATGTATTTCAACCGGTTCAATCATATCTG 897 Query 967 GTTCA 971 ||||| Sbjct 898 GTTCA 902 Score = 697 bits (377), Expect = 0.0 Identities = 507/569 (89%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 932 GGACCGAAGAAATTCAACCGGTTCAATCAGGTCTGGTTCAAGCCAACGAGTTCA-GCAAA 990 |||||||||||||||||||||||||||||| ||||||||||| | ||||| | | || || Sbjct 599 GGACCGAAGAAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCGACGAGGT-AGGCCAA 657 Query 991 GTGAATGGA-TATTCCCAAAGCATGAACCAAGATAGCATGTTCAACAAATCAGCAACCAA 1049 | ||| || |||||| ||| |||||||||||||| ||||||||||||| ||||||| || Sbjct 658 CTTAAT-GACTATTCCAAAATCATGAACCAAGATAACATGTTCAACAAAGCAGCAACGAA 716 Query 1050 CCCGCGATTGACATGGAACGAATTACTTCAACCGGTTCAATCAGATCTGGTTCAA-TCCA 1108 ||||| |||||||||| || | || ||||||||||||||||||||||||||||| | || Sbjct 717 ACCGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTCAAGT-CA 775 Query 1109 ATGAGTTTAG-CCAATTCAGTGACTATTCTCAAATCATGAACGAAGATAACATGTTCAAC 1167 | || || | |||| ||| ||||||||| |||||||||||| ||||||||||||||||| Sbjct 776 ACAAG-TTCGACCAACTCAATGACTATTCCCAAATCATGAACCAAGATAACATGTTCAAC 834 Query 1168 AAAGCAGCAAAGAAACCGCGGA-TGACATGGAGTGAAGTATTTCAACCGGTTCAATCACA 1226 |||||||||||||||||||| | ||||||||| || ||||||||||||||||||||| | Sbjct 835 AAAGCAGCAAAGAAACCGCG-ACTGACATGGACCGATGTATTTCAACCGGTTCAATCATA 893 Query 1227 TCTGGTTCCGACTGACGGTTTAGACCGAGACCACTTTGATTCCATAACCATAAACGGAGG 1286 |||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||| Sbjct 894 TCTGGTTCAGACTGCCGGTTTAGACCGAGACTACCATGATTCCATAACCATAAACGGAGG 953 Query 1287 TAACGGCATACAAAACATGGAAAAGAAACAAGGaaaaaaaCCACGGAAGCCGCGGATGAC 1346 |||||||| |||||||| |||||||||| ||| |||||| |||||||||||||||||||| Sbjct 954 TAACGGCAGACAAAACACGGAAAAGAAAGAAGCAAAAAAGCCACGGAAGCCGCGGATGAC 1013 Query 1347 GTGGACCGAAGAGCTTCACCAAAAATTTCTGGAAGCCATCGAAATAATTGGTGGTATCGA 1406 ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 1014 ATGGACCGAAGATCTTCACCAAAAATTTCTGGAAGCCATCGAAATAGTTGGTGGCATCGA 1073 Query 1407 AAAAGCTAACCCAAAGGTACTTGTCGAATGCTTGCAAGAAATGA-GGATAGAAGGAATTA 1465 ||||||||| |||||||||||| |||| ||||||| |||||||| || |||||||||| | Sbjct 1074 AAAAGCTAATCCAAAGGTACTTCTCGACTGCTTGCTAGAAATGAAGG-TAGAAGGAATCA 1132 Query 1466 CTAGAAGCAATGTGGCAAGTCATCTTCAG 1494 || ||||||||||||| |||||||||||| Sbjct 1133 CTCGAAGCAATGTGGCCAGTCATCTTCAG 1161 Score = 472 bits (255), Expect = 6e-132 Identities = 379/436 (87%), Gaps = 20/436 (5%) Strand=Plus/Plus Query 1525 AAACACCGTATCAATCTTGAAGAAAACCAAATTCCTCAACAAACACAAG-GGAATGGTTG 1583 |||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||| Sbjct 1162 AAACACCGTATCAATCTTGAAGAAAACCAAATTCCTGAAGAAACACAAGAGGA-TGGTTG 1220 Query 1584 GGCCACTGCGTATGGTACACTAGCTCCCTCTCTCCAAGGTTCAGACAATGTCAACACAAC 1643 | ||||||||||| || || |||||| |||||||||||||||||||||||||||||||| Sbjct 1221 GTCCACTGCGTATAATAGACCAGCTCCTTCTCTCCAAGGTTCAGACAATGTCAACACAAC 1280 Query 1644 AATACCATCGTACCTTATGAATGGTCCAGCCACTTTGAACCAAATCCAGCAGAATCAATA 1703 |||| || | ||||| |||||||| | |||| | |||||| || |||||||||||||| Sbjct 1281 AATATCACCATACCTAATGAATGGACGAGCCG-T--GAACCAGATTCAGCAGAATCAATA 1337 Query 1704 TCAAAATGGTTTCTTGACAATGAACAACAACCAGATCATAACCAATCCTCCGCCTCCTTT 1763 | ||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 1338 TGAAAATGGTTACTTGACAATGAACAACAACCAGGTCATAACCAATCCTCTGCCTCCTTT 1397 Query 1764 GCCCTAT-TTG-------GA--C-C-ATCATCA-C--CAACAGCAACATCAGTCTTCTCC 1808 ||| ||| ||| || | | |||| || | ||||||||| ||| ||||||||| Sbjct 1398 GCCATATCTTGACCATCAGATTCTCCATCAGCATCAACAACAGCAATATCCGTCTTCTCC 1457 Query 1809 TCAATTTAATTACCTGATGAACAATGAAGAACTTCTTCAAGCCTCTGGCCTCTCTGCGAC 1868 |||||||||||||||||||| ||| ||||||| || |||||||||||| ||| ||| || Sbjct 1458 TCAATTTAATTACCTGATGAGCAACGAAGAACCTCAACAAGCCTCTGGCATCTATGCAAC 1517 Query 1869 AGATCTTGAACTCACTTATCCAAGTTTACCATATGATCCACAAGAGTATCTAATCAATGG 1928 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| || Sbjct 1518 GGATCTTGAACTCACTTATCCAAGTCTACCATATGATCCACAAGAGCATCTAATCAAGGG 1577 Query 1929 CTACAATTATAATTAG 1944 |||||||||||||||| Sbjct 1578 CTACAATTATAATTAG 1593 Score = 222 bits (120), Expect = 7e-57 Identities = 165/187 (88%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 654 ACCGCTGATCACATGGACCGAAGAAATTCAACCGGTTCAGTCAGATCTGGTTCAAGCCAA 713 ||||| | | |||||||||| || ||||||||||||||| |||||||||||||||| ||| Sbjct 717 ACCGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCAA 776 Query 714 CAAGTTCGACCAAGTGAATGGCTATTCCCCAATCATGAACCAAGATAACATGTTCAACAA 773 ||||||||||||| | |||| |||||||| |||||||||||||||||||||||||||||| Sbjct 777 CAAGTTCGACCAACTCAATGACTATTCCCAAATCATGAACCAAGATAACATGTTCAACAA 836 Query 774 AGCACCACCTAAACCGCGAATGACGTGGACAGAAGTTATT-CAACCGGTTCAATCAAATC 832 |||| || ||||||||| |||| ||||| || || ||| ||||||||||||||| ||| Sbjct 837 AGCAGCAAAGAAACCGCGACTGACATGGACCGATGT-ATTTCAACCGGTTCAATCATATC 895 Query 833 TGGTTCA 839 ||||||| Sbjct 896 TGGTTCA 902 Score = 185 bits (100), Expect = 9e-46 Identities = 154/179 (86%), Gaps = 8/179 (4%) Strand=Plus/Plus Query 1060 ACATGGAACGAATTACTTCAACCGGTTCAATCAGATCTGGTTCAA-TCCAATGAGTTTAG 1118 ||| ||| |||| | ||||||||||||||||||||||||||||| || | ||| | || Sbjct 595 ACACGGACCGAAGAAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCGAC-GAGGT-AG 652 Query 1119 -CCAA-TTCAGTGACTATTCTCAAA-TCATGAACGAAGATAACATGTTCAACAAAGCAGC 1175 |||| || | ||||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct 653 GCCAACTTAA-TGACTATTC-CAAAATCATGAACCAAGATAACATGTTCAACAAAGCAGC 710 Query 1176 AAAGAAACCGCGGATGACATGGAGTGAAGTATTTCAACCGGTTCAATCACATCTGGTTC 1234 || |||||||||| ||||||||| | |||| ||||||||||||||||| ||||||||| Sbjct 711 AACGAAACCGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTC 769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80065694990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5