BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49190.2
Length=2128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474061 jgi|Araly1|474061|fgenesh2_kg.1__4015__AT1G49190.1 1206 0.0
> Ahg474061 jgi|Araly1|474061|fgenesh2_kg.1__4015__AT1G49190.1
Length=1593
Score = 1206 bits (653), Expect = 0.0
Identities = 823/905 (91%), Gaps = 12/905 (1%)
Strand=Plus/Plus
Query 76 ATGTTGGTGGGAAAGATAAGTGGATATGAAGATAATACTCGCTCTTTGGAGCGAGAAACA 135
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGTTGGTAGGAAAGATAAGTGGATATGAAGATAATACTCGTTCTTTGGAGCGAGAAACA 60
Query 136 TCTGAAATCACTTCTCTTCTCAGCCAATTTCCGGGGAATACTAATGTCCTTGTTGTTGAC 195
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 61 TCTGAAATCACTTCTCTTCTCAGCCAATTTCCAGGGAATACTAATGTTCTTGTTGTTGAC 120
Query 196 ACCAATTTCACCACTCTACTCAACATGAAACAAATCATGAAACAATACGCTTATCAAGTG 255
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 ACCAATTTCACCACTCTACTCAATATGAAACAAATCATGAAACAATACGCCTATCAAGTG 180
Query 256 TCTATTGAGACAGATGCAGAAAAAGCTCTTGCGTTTTTGACAAGCTGCAAACATGAAATC 315
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 ACTATTGAGACAGATGCCGAAAAAGCTCTTGCGTATTTGACAAGCTGCAAACATGAAATT 240
Query 316 AATATTGTGATTTGGGATTTTCATATGCCTGGAATTGATGGACTTCAAGCTCTCAAGAGC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATATTGTGATTTGGGATTTTCATATGCCTGGAATTGATGGACTTCAAGCTCTCAAGAGC 300
Query 376 ATTACTTCAAAGTTGGATTTACCTGTAGTGATTATGTCTGATGATAATCAAACGGAATCT 435
||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 ATTGGTTCAAAGATGGATTTACCTGTAGTGATTATGTCTGATGATAATCAAACAGAATCG 360
Query 436 GTGATGAAAGCAACATTTTACGGTGCTTGTGACTATGTTGTGAAACCGGTTAAAGAAGAG 495
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGATGAAAGCAACAATAAACGGTGCTTGTGACTATGTTGTGAAACCGGTTAAAGAAGAG 420
Query 496 GTAATGGCCAATATATGGCAACACATTGTACGGAAGAGGCTGATCTTTAAACCGGATGTT 555
||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 421 GTAATAGCCAATATATGGCAACACATTGTACGGAAGATACTGATGTCTAAACCGGATGTA 480
Query 556 GCTCCACCGGTTCAATCAGATCCGGCTC-GCTCTGACCGTTTAGACCAAGTC-AA-A--- 609
| |||||||||||||||||||| ||||| | |||||| |||||||||||| | || |
Sbjct 481 GTTCCACCGGTTCAATCAGATCTGGCTCAG-TCTGACGGTTTAGACCAAGGCCAAGACAA 539
Query 610 -GCTGATTTCAAGATCGTAGAAGATGAACCAATA-ATCAATGAGACACCGCTGATCACAT 667
|||||||||||||||||||| || ||||||| | |||||||||| |||||||||||||
Sbjct 540 AGCTGATTTCAAGATCGTAGACGAAGAACCAA-ACATCAATGAGAAACCGCTGATCACAC 598
Query 668 GGACCGAAGAAATTCAACCGGTTCAGTCAGATCTGGTTCAAGCCAACAAGTTCGACCAAG 727
||||||||||||||||||||||||| |||||||||||||||| | || || | | ||||
Sbjct 599 GGACCGAAGAAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCGACGAGGTAGGCCAAC 658
Query 728 TGAATGGCTATTCCCCAATCATGAACCAAGATAACATGTTCAACAAAGCACCACCTAAAC 787
| |||| ||||||| |||||||||||||||||||||||||||||||||| || | ||||
Sbjct 659 TTAATGACTATTCCAAAATCATGAACCAAGATAACATGTTCAACAAAGCAGCAACGAAAC 718
Query 788 CGCGAATGACGTGGACAGAAGTTATTCAACCGGTTCAATCAAATCTGGTTCAAA-CAAAA 846
|||| |||| ||||| | ||| |||||||||||||||||| ||||||||||| ||| |
Sbjct 719 CGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCAACA 778
Query 847 GAGTTCGGCCAACTCAATGACTATTCCCAAATCATGAACCAAGATAGCATGTACAACAAA 906
|||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 779 -AGTTCGACCAACTCAATGACTATTCCCAAATCATGAACCAAGATAACATGTTCAACAAA 837
Query 907 GCAGCAACCAAACCACAATTGACGTGGACCGAAGAAATTCAACCGGTTCAATCAGGTCTG 966
||||||| ||||| | | |||| |||||||| | | ||||||||||||||||| ||||
Sbjct 838 GCAGCAAAGAAACCGCGACTGACATGGACCGATGTATTTCAACCGGTTCAATCATATCTG 897
Query 967 GTTCA 971
|||||
Sbjct 898 GTTCA 902
Score = 697 bits (377), Expect = 0.0
Identities = 507/569 (89%), Gaps = 12/569 (2%)
Strand=Plus/Plus
Query 932 GGACCGAAGAAATTCAACCGGTTCAATCAGGTCTGGTTCAAGCCAACGAGTTCA-GCAAA 990
|||||||||||||||||||||||||||||| ||||||||||| | ||||| | | || ||
Sbjct 599 GGACCGAAGAAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCGACGAGGT-AGGCCAA 657
Query 991 GTGAATGGA-TATTCCCAAAGCATGAACCAAGATAGCATGTTCAACAAATCAGCAACCAA 1049
| ||| || |||||| ||| |||||||||||||| ||||||||||||| ||||||| ||
Sbjct 658 CTTAAT-GACTATTCCAAAATCATGAACCAAGATAACATGTTCAACAAAGCAGCAACGAA 716
Query 1050 CCCGCGATTGACATGGAACGAATTACTTCAACCGGTTCAATCAGATCTGGTTCAA-TCCA 1108
||||| |||||||||| || | || ||||||||||||||||||||||||||||| | ||
Sbjct 717 ACCGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTCAAGT-CA 775
Query 1109 ATGAGTTTAG-CCAATTCAGTGACTATTCTCAAATCATGAACGAAGATAACATGTTCAAC 1167
| || || | |||| ||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 776 ACAAG-TTCGACCAACTCAATGACTATTCCCAAATCATGAACCAAGATAACATGTTCAAC 834
Query 1168 AAAGCAGCAAAGAAACCGCGGA-TGACATGGAGTGAAGTATTTCAACCGGTTCAATCACA 1226
|||||||||||||||||||| | ||||||||| || ||||||||||||||||||||| |
Sbjct 835 AAAGCAGCAAAGAAACCGCG-ACTGACATGGACCGATGTATTTCAACCGGTTCAATCATA 893
Query 1227 TCTGGTTCCGACTGACGGTTTAGACCGAGACCACTTTGATTCCATAACCATAAACGGAGG 1286
|||||||| ||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 894 TCTGGTTCAGACTGCCGGTTTAGACCGAGACTACCATGATTCCATAACCATAAACGGAGG 953
Query 1287 TAACGGCATACAAAACATGGAAAAGAAACAAGGaaaaaaaCCACGGAAGCCGCGGATGAC 1346
|||||||| |||||||| |||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 954 TAACGGCAGACAAAACACGGAAAAGAAAGAAGCAAAAAAGCCACGGAAGCCGCGGATGAC 1013
Query 1347 GTGGACCGAAGAGCTTCACCAAAAATTTCTGGAAGCCATCGAAATAATTGGTGGTATCGA 1406
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1014 ATGGACCGAAGATCTTCACCAAAAATTTCTGGAAGCCATCGAAATAGTTGGTGGCATCGA 1073
Query 1407 AAAAGCTAACCCAAAGGTACTTGTCGAATGCTTGCAAGAAATGA-GGATAGAAGGAATTA 1465
||||||||| |||||||||||| |||| ||||||| |||||||| || |||||||||| |
Sbjct 1074 AAAAGCTAATCCAAAGGTACTTCTCGACTGCTTGCTAGAAATGAAGG-TAGAAGGAATCA 1132
Query 1466 CTAGAAGCAATGTGGCAAGTCATCTTCAG 1494
|| ||||||||||||| ||||||||||||
Sbjct 1133 CTCGAAGCAATGTGGCCAGTCATCTTCAG 1161
Score = 472 bits (255), Expect = 6e-132
Identities = 379/436 (87%), Gaps = 20/436 (5%)
Strand=Plus/Plus
Query 1525 AAACACCGTATCAATCTTGAAGAAAACCAAATTCCTCAACAAACACAAG-GGAATGGTTG 1583
|||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||
Sbjct 1162 AAACACCGTATCAATCTTGAAGAAAACCAAATTCCTGAAGAAACACAAGAGGA-TGGTTG 1220
Query 1584 GGCCACTGCGTATGGTACACTAGCTCCCTCTCTCCAAGGTTCAGACAATGTCAACACAAC 1643
| ||||||||||| || || |||||| ||||||||||||||||||||||||||||||||
Sbjct 1221 GTCCACTGCGTATAATAGACCAGCTCCTTCTCTCCAAGGTTCAGACAATGTCAACACAAC 1280
Query 1644 AATACCATCGTACCTTATGAATGGTCCAGCCACTTTGAACCAAATCCAGCAGAATCAATA 1703
|||| || | ||||| |||||||| | |||| | |||||| || ||||||||||||||
Sbjct 1281 AATATCACCATACCTAATGAATGGACGAGCCG-T--GAACCAGATTCAGCAGAATCAATA 1337
Query 1704 TCAAAATGGTTTCTTGACAATGAACAACAACCAGATCATAACCAATCCTCCGCCTCCTTT 1763
| ||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1338 TGAAAATGGTTACTTGACAATGAACAACAACCAGGTCATAACCAATCCTCTGCCTCCTTT 1397
Query 1764 GCCCTAT-TTG-------GA--C-C-ATCATCA-C--CAACAGCAACATCAGTCTTCTCC 1808
||| ||| ||| || | | |||| || | ||||||||| ||| |||||||||
Sbjct 1398 GCCATATCTTGACCATCAGATTCTCCATCAGCATCAACAACAGCAATATCCGTCTTCTCC 1457
Query 1809 TCAATTTAATTACCTGATGAACAATGAAGAACTTCTTCAAGCCTCTGGCCTCTCTGCGAC 1868
|||||||||||||||||||| ||| ||||||| || |||||||||||| ||| ||| ||
Sbjct 1458 TCAATTTAATTACCTGATGAGCAACGAAGAACCTCAACAAGCCTCTGGCATCTATGCAAC 1517
Query 1869 AGATCTTGAACTCACTTATCCAAGTTTACCATATGATCCACAAGAGTATCTAATCAATGG 1928
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 1518 GGATCTTGAACTCACTTATCCAAGTCTACCATATGATCCACAAGAGCATCTAATCAAGGG 1577
Query 1929 CTACAATTATAATTAG 1944
||||||||||||||||
Sbjct 1578 CTACAATTATAATTAG 1593
Score = 222 bits (120), Expect = 7e-57
Identities = 165/187 (88%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 654 ACCGCTGATCACATGGACCGAAGAAATTCAACCGGTTCAGTCAGATCTGGTTCAAGCCAA 713
||||| | | |||||||||| || ||||||||||||||| |||||||||||||||| |||
Sbjct 717 ACCGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCAA 776
Query 714 CAAGTTCGACCAAGTGAATGGCTATTCCCCAATCATGAACCAAGATAACATGTTCAACAA 773
||||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 777 CAAGTTCGACCAACTCAATGACTATTCCCAAATCATGAACCAAGATAACATGTTCAACAA 836
Query 774 AGCACCACCTAAACCGCGAATGACGTGGACAGAAGTTATT-CAACCGGTTCAATCAAATC 832
|||| || ||||||||| |||| ||||| || || ||| ||||||||||||||| |||
Sbjct 837 AGCAGCAAAGAAACCGCGACTGACATGGACCGATGT-ATTTCAACCGGTTCAATCATATC 895
Query 833 TGGTTCA 839
|||||||
Sbjct 896 TGGTTCA 902
Score = 185 bits (100), Expect = 9e-46
Identities = 154/179 (86%), Gaps = 8/179 (4%)
Strand=Plus/Plus
Query 1060 ACATGGAACGAATTACTTCAACCGGTTCAATCAGATCTGGTTCAA-TCCAATGAGTTTAG 1118
||| ||| |||| | ||||||||||||||||||||||||||||| || | ||| | ||
Sbjct 595 ACACGGACCGAAGAAATTCAACCGGTTCAATCAGATCTGGTTCAAGTCGAC-GAGGT-AG 652
Query 1119 -CCAA-TTCAGTGACTATTCTCAAA-TCATGAACGAAGATAACATGTTCAACAAAGCAGC 1175
|||| || | ||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 653 GCCAACTTAA-TGACTATTC-CAAAATCATGAACCAAGATAACATGTTCAACAAAGCAGC 710
Query 1176 AAAGAAACCGCGGATGACATGGAGTGAAGTATTTCAACCGGTTCAATCACATCTGGTTC 1234
|| |||||||||| ||||||||| | |||| ||||||||||||||||| |||||||||
Sbjct 711 AACGAAACCGCGGTTGACATGGACCGGAGTAATTCAACCGGTTCAATCAGATCTGGTTC 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80065694990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5