BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49200.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474062 jgi|Araly1|474062|fgenesh2_kg.1__4016__AT1G49200.1 1391 0.0
Ahg474063 jgi|Araly1|474063|fgenesh2_kg.1__4017__AT1G49210.1 928 0.0
Ahg474064 jgi|Araly1|474064|fgenesh2_kg.1__4018__AT1G49220.1 880 0.0
> Ahg474062 jgi|Araly1|474062|fgenesh2_kg.1__4016__AT1G49200.1
Length=918
Score = 1391 bits (753), Expect = 0.0
Identities = 870/926 (94%), Gaps = 10/926 (1%)
Strand=Plus/Plus
Query 1 AAGAAGCAATAACCAAACAAAGCCAAGCAAAGCAGAGAGAAGAGACCAAAGCTTT--TTC 58
|||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 1 AAGAAGCAATAACCAAACAAAGCCAAGCAAAGCAGAGAGAAGAG-----A-CTTTGATTC 54
Query 59 AAAGACTaaaaaaaTGGCTGCAAATGAATTAGCTTCTTCTTCAGTTCAAGCCTTCCAAGA 118
| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 55 AGAGACT-AAAAAATGGCTGCAAATGAATTAGCTTCTTCTTCAGCACAAGCCTTCCAAGA 113
Query 119 GCAATCCCTTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAA 178
|||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 114 GCAATCCCTTAGAGGTTTTGTCTCTAGAAAGCTTCTTCTGCACAATCCATTTGACCACAA 173
Query 179 CACTCAAAGAGCCTTTGCAGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAG 238
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CACTCAACGAGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAG 233
Query 239 TGGAAATGTTCTGATGCTTCTCTCAGTCCTCATCTGTGGCATCATCTGTTGCCTCGGGTT 298
||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 234 TGGGAATGTCCTGATGCTTCTCTCAATCCTCATCTGTGGCATCATCTGTTGCCTCGGGTT 293
Query 299 ACATTACATCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCTGAGCCTAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 294 ACATTACATCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCCGAACCTAT 353
Query 359 AGCCGGTCTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAATAAGAAAGCTCTTAG 418
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 354 CTCTGGTCTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAG 413
Query 419 AATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACTTGCCGGGGCTTGGCGAAGAGTG 478
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 414 GATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACCTGCCGGGACTTGGCGAAGAGTG 473
Query 479 TGTCATTTGTTTGTCAGATTTTGTTTCCGGTGAACAGATTAGGATGCTACCTAAGTGCCA 538
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 474 TGTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGATCAGGATGCTCCCTAAGTGCCA 533
Query 539 CCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATTTGACTTGTCCAAA 598
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 534 CCATGGGTTCCATGTTCGTTGCATTGACAAGTGGCTTCAACAACGTTTGACTTGTCCGAA 593
Query 599 ATGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCTGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 ATGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCTGA 653
Query 659 TCAAGTGGCAGCAACACCAACAGCGAGCGTAATTGTCAGGATTGCTCCTCTGGAACCTGA 718
||||||||||||||||||||||| |||||||||||||| |||| ||||| | ||||||||
Sbjct 654 TCAAGTGGCAGCAACACCAACAGAGAGCGTAATTGTCATGATTTCTCCTTTAGAACCTGA 713
Query 719 AGGAAGAGTAAACATTTTAAGAGAAAGCAGCTAGATGCCAAGAGAGGCAGAAACCATCAA 778
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 714 AGGAAGAGTAAACACTTTAAGAGAAAGCAGCTAGATGCCAAGAGAGACAGAAACCATCAA 773
Query 779 AAATCAAAATTCGTGATTTAGTTAGATAGGAGATTTTTGATCTGAGCTTAGTTCATGTCT 838
|||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 774 AAATCAGAATTTGTGATTTAGTTAGATAGGAGATTTTTGATCTGAGCACAATTCATGTCT 833
Query 839 TTAGCTATAGAAGGATACCTCAATGtttttttatgtctttcttttttGCCTGTAGCACAA 898
| |||| ||||||||||| ||| | |||||||||| |||||||| |||||||||||||||
Sbjct 834 TCAGCTTTAGAAGGATACATCAGT-TTTTTTTATGCCTTTCTTTATTGCCTGTAGCACAA 892
Query 899 AGTGTATACAGATTACAGAGAGAATA 924
||||||||||||||||||| ||||||
Sbjct 893 AGTGTATACAGATTACAGAAAGAATA 918
> Ahg474063 jgi|Araly1|474063|fgenesh2_kg.1__4017__AT1G49210.1
Length=783
Score = 928 bits (502), Expect = 0.0
Identities = 678/762 (89%), Gaps = 15/762 (2%)
Strand=Plus/Plus
Query 1 AAGAAGCAATAACCAAACAAAGCCAAGCAAAGCAGAG-AGA-AGAGA-CCAAAGCTTTTT 57
|||||||||||||||||| ||| || || || |||| ||| || ||||||||||
Sbjct 29 AAGAAGCAATAACCAAAC-AAGAAAACCAGAG-AGAGCAGACTTTGATTTAAAGCTTTTT 86
Query 58 CAAAGACTaaaaaaaTGGCTGCAAATGAATTAGCTTCTTCTTCAGTTCAAGCCTTCCAAG 117
||| || | |||||||| ||| |||||| ||| | ||||||||| |||| ||||||||
Sbjct 87 CAAGGAGT-AAAAAATGTCTGTAAATGAGTTA-C--CTTCTTCAGCTCAATACTTCCAAG 142
Query 118 -AGCAATCCCTTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCAC 176
|| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 143 AAG-GATTCCTTGGCGGTTTTGTCTCTAGAAAGCTTCTTCTGCACGACCCATTTGACCAC 201
Query 177 AACACTCAAAGAGCCTTTGCAGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTC 236
||| ||| | ||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 202 AACTCTCTACGAGTCTTAGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTC 261
Query 237 AGTGGAAATGTTCTGATGCTTCTCTCAGTCCTCATCTGTGGCATCATCTGTTGCCTCGGG 296
|| || |||||| ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 262 AGAGGGAATGTTTTGATGCTTCTCTCAGTCCTCATCTGCGGCATCATCTGTTGCCTTGGG 321
Query 297 TTACATTACATCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCTGAGCCT 356
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 322 TTACATTACATCATTCGTTGTGCATTCAGACGTTCTTCACGTTTCATCATCTCTGAGCCT 381
Query 357 ATAGCCGGTCTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAATAAGAAAGCTCTT 416
||| || ||||| | ||||| | ||||||||| ||||||||||||| |||||||||||
Sbjct 382 ATATCCAGTCTTCCCGCACCACGAGGTTCATCAGACAAAGGAATCAAGAAGAAAGCTCTC 441
Query 417 AGAATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACTTGCCGGGGCTTGGCGAAGAG 476
|| |||||||| || ||||||||||||| |||||||||| |||||||||||| |||||
Sbjct 442 AGGATGTTCCCGGTCGTGAGTTACTCACGTGAGATGAACCTGCCGGGGCTTGATAAAGAG 501
Query 477 TGTGTCATTTGTTTGTCAGATTTTGTTTCCGGTGAACAGATTAGGATGCTACCTAAGTGC 536
||||||||||||||||| ||||||||||||||||||||| | ||| | || || ||||||
Sbjct 502 TGTGTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGCTCAGGCTTCTCCCCAAGTGC 561
Query 537 CACCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATTTGACTTGTCCA 596
|||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 562 AACCACGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCGACAACATTTGACATGTCCG 621
Query 597 AAATGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCT 656
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 622 AAATGAAGACACTGTCTGGTTGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCT 681
Query 657 GAT-CAAGTGGCAGCAACACCAACAGCGAGCGTAATTGTCAGGATTGCTCCTCTGGAACC 715
||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 682 GATTCAA-TGGCAGCAACACCAACAGAGAGCGTAATTGTCAGGATTGCTCCTCTAGAACC 740
Query 716 TGAAGGAAGAGTAAACA-TTTTAAGAGAAAGCAGCTAGATGC 756
||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 741 TGAAGGAAGAGTAAACACTTTTA-GAGAAAGCAGCTAGATGC 781
> Ahg474064 jgi|Araly1|474064|fgenesh2_kg.1__4018__AT1G49220.1
Length=682
Score = 880 bits (476), Expect = 0.0
Identities = 621/690 (90%), Gaps = 13/690 (2%)
Strand=Plus/Plus
Query 68 aaaaaTGGCTGCAAATGAATTAGCTTCTTCTTCAGTTCAAGCCTTCCAAGAGCAA-TCCC 126
||||||| ||||| |||| ||| | ||||||||| ||||||||||||||||||| || |
Sbjct 1 AAAAATGTCTGCATATGAGTTA-C--CTTCTTCAGCTCAAGCCTTCCAAGAGCAACTCAC 57
Query 127 TTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACACTCAAA 186
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 58 -TGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCGTTTGACCACAACACTCAAC 116
Query 187 GAGCCTTTGCAGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGAAATG 246
||| |||||| ||| |||||||||||||||| ||||||| |||||||||||| || ||||
Sbjct 117 GAGACTTTGCGGTTTCACCATCTCCTCTCATTACCCATGTGAACAACCTCAGGGGGAATG 176
Query 247 TTCTGATGCTTCTCTCAGTCCTCATCTGTGGCATCATCTGTTGCCTCGGGTTACATTACA 306
||||||||||||||||| ||||||| |||||||||||||| ||||||||| | |||||||
Sbjct 177 TTCTGATGCTTCTCTCAATCCTCATTTGTGGCATCATCTGCTGCCTCGGGCTGCATTACA 236
Query 307 TCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCTGAGCCTATAGCCG-GT 365
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 237 TCATTCGTTGTGCATCCAGACGTTCTTCACGTTTCATGATCTCTGAGCCTATA-CCTAGT 295
Query 366 CTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAATAAGAAAGCTCTTAGAATGTTC 425
| | ||||| || | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 296 CATCCAACAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTC 355
Query 426 CCAGTTGTGAGTTACTCACCTGAGATGAACTTGCCGGGGCTTGGCGAAGAGTGTGTCATT 485
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 356 CCAGTTGTGAGTTACTCACCAGAGATGAACCTGCCGGGGCTTGGCGAAGAGTGTGTCATT 415
Query 486 TGTTTGTCAGATTTTGTTTCCGGTGAACAGATTAGGATGCTACCTAAGTGCCACCATGGG 545
|||||||| ||||||||||| ||||||||| | ||| |||| || |||||| |||| ||
Sbjct 416 TGTTTGTCCGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTGCAACCACGGA 475
Query 546 TTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATTTGACTTGTCCAAAATGCAGA 605
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 476 TTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAGCATTTGACATGTCCGAAATGCAGA 535
Query 606 CACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCTGAT-CAAGT 664
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 536 CACTGTCTGGTCGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCA-GT 594
Query 665 GGCAGCA-ACACCAACAGCGAGCGTAATTGTCAGGATTGCTCCTCTGGAACCTGAAGGAA 723
|| ||| | |||||||| | ||| ||||||| |||||||||||| |||||||||||||
Sbjct 595 TGCGGCAGA-ACCAACAGAAATCGTGATTGTCATGATTGCTCCTCTAGAACCTGAAGGAA 653
Query 724 GAGTAAACATTT-TAAGAGAAAGCAGCTAG 752
||||||||| || || |||||| |||||||
Sbjct 654 GAGTAAACACTTGTA-GAGAAATCAGCTAG 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5