BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49210.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474063 jgi|Araly1|474063|fgenesh2_kg.1__4017__AT1G49210.1 1153 0.0
Ahg474062 jgi|Araly1|474062|fgenesh2_kg.1__4016__AT1G49200.1 952 0.0
Ahg474064 jgi|Araly1|474064|fgenesh2_kg.1__4018__AT1G49220.1 867 0.0
Ahg929765 jgi|Araly1|929765|scaffold_302222.1 412 2e-114
> Ahg474063 jgi|Araly1|474063|fgenesh2_kg.1__4017__AT1G49210.1
Length=783
Score = 1153 bits (624), Expect = 0.0
Identities = 735/789 (93%), Gaps = 6/789 (1%)
Strand=Plus/Plus
Query 1 AAGACCACTTTGAATTCCCCAAAACTTAAAAAAGCAATAAGCAAACAAAGCCAAGAAAAG 60
|||||||||||| |||||||||||||| || ||||||||| | |||| ||||||||
Sbjct 1 AAGACCACTTTGCATTCCCCAAAACTTTAAGAAGCAATAA-C---CAAA--CAAGAAAAC 54
Query 61 CAGAGAGAACAGACTTTGATTTAAAGCTTTTTCAAAGAGTAAAACATGTCTGCAAACGAG 120
|||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||| |||
Sbjct 55 CAGAGAGAGCAGACTTTGATTTAAAGCTTTTTCAAGGAGTAAAAAATGTCTGTAAATGAG 114
Query 121 TTACCTGCTTCAGCTCAATCCTTGCAAGAACAATTCCTTGGCAGTTTTGTCACTAGAAAG 180
|||||| |||||||||||| ||| |||||| |||||||||| |||||||| ||||||||
Sbjct 115 TTACCTTCTTCAGCTCAATACTTCCAAGAAGGATTCCTTGGCGGTTTTGTCTCTAGAAAG 174
Query 181 CTTCTTCTGCACGACCCATTTGACCACAACTCTCTTCGAGTATTTGCGGTTGCACCATCT 240
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 175 CTTCTTCTGCACGACCCATTTGACCACAACTCTCTACGAGTCTTAGCGGTTGCACCATCT 234
Query 241 CCTCTCATAACACATGAGAACAACCTCAAAGGGAATGTTCTGATGCTTCTCTCAGTTCTC 300
||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 235 CCTCTCATAACCCATGAGAACAACCTCAGAGGGAATGTTTTGATGCTTCTCTCAGTCCTC 294
Query 301 ATCTGTGGCATCATCTGTTGCCTTGGGTTACATTACATCATTCGCTGTGCATTCAGACGT 360
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 295 ATCTGCGGCATCATCTGTTGCCTTGGGTTACATTACATCATTCGTTGTGCATTCAGACGT 354
Query 361 TCTTCACGTTTCATGATCTCTGAGCCTATATCCAGTCTTTCAACACCACGAAGTTCATCA 420
|||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 355 TCTTCACGTTTCATCATCTCTGAGCCTATATCCAGTCTTCCCGCACCACGAGGTTCATCA 414
Query 421 AACAAAGGAATCAAGAAGAAAGCTCTGAGGATGTTCCCAGTCGTGAGTTACTCACGTGAG 480
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 415 GACAAAGGAATCAAGAAGAAAGCTCTCAGGATGTTCCCGGTCGTGAGTTACTCACGTGAG 474
Query 481 ATGAACTTGCCCGGGATTGGTGAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCTGGT 540
|||||| |||| ||| ||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 475 ATGAACCTGCCGGGGCTTGATAAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCCGGT 534
Query 541 GAACAGCTCAGGCTGCTCCCCAAGTGCAATCATGGGTTCCATGTTCGTTGCATAGACAAG 600
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 535 GAACAGCTCAGGCTTCTCCCCAAGTGCAACCACGGGTTCCATGTTCGTTGCATAGACAAG 594
Query 601 TGGCTTCAACATCATTTGACATGTCCGAAATGCAGACACTGTCTGGTTGAGACATGTCAA 660
||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 595 TGGCTTCGACAACATTTGACATGTCCGAAATGAAGACACTGTCTGGTTGAGACATGCCAA 654
Query 661 AAGATATTAGGTGACTTCAGTCAAGCTGATTCAATGGCATCAACACCAACAGAGAGCGTA 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 655 AAGATATTAGGTGACTTCAGTCAAGCTGATTCAATGGCAGCAACACCAACAGAGAGCGTA 714
Query 721 ATTGTCAGGATTGATCCTCTAGAACCTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGC 780
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATTGTCAGGATTGCTCCTCTAGAACCTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGC 774
Query 781 TAGATGCAA 789
|||||||||
Sbjct 775 TAGATGCAA 783
> Ahg474062 jgi|Araly1|474062|fgenesh2_kg.1__4016__AT1G49200.1
Length=918
Score = 952 bits (515), Expect = 0.0
Identities = 732/834 (88%), Gaps = 26/834 (3%)
Strand=Plus/Plus
Query 32 AAGCAATAAGCAAACAAAGCCAAGAAAAGCAGAGAGAACAGACTTTGATTTAAAGCTTTT 91
||||||||| |||||||||||||| ||||||||||||| |||||||| | |
Sbjct 4 AAGCAATAACCAAACAAAGCCAAGCAAAGCAGAGAGAAGAGACTTTG------A-----T 52
Query 92 TCAAAGAGTAAAACATGTCTGCAAACGAGTTA-C--CTGCTTCAGCTCAATCCTTGCAAG 148
||| ||| ||||| ||| ||||||| || ||| | || ||||||| ||| |||| ||||
Sbjct 53 TCAGAGACTAAAAAATGGCTGCAAATGAATTAGCTTCTTCTTCAGCACAAGCCTTCCAAG 112
Query 149 AACAATTCCTTGGCA-GTTTTGTCACTAGAAAGCTTCTTCTGCACGACCCATTTGACCAC 207
| |||| |||| | | |||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 113 AGCAATCCCTTAG-AGGTTTTGTCTCTAGAAAGCTTCTTCTGCACAATCCATTTGACCAC 171
Query 208 AACTCTCTTCGAGTATTTGCGGTTGCACCATCTCCTCTCATAACACATGAGAACAACCTC 267
||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 172 AACACTCAACGAGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTC 231
Query 268 AAAGGGAATGTTCTGATGCTTCTCTCAGTTCTCATCTGTGGCATCATCTGTTGCCTTGGG 327
| |||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 232 AGTGGGAATGTCCTGATGCTTCTCTCAATCCTCATCTGTGGCATCATCTGTTGCCTCGGG 291
Query 328 TTACATTACATCATTCGCTGTGCATTCAGACGTTCTTCACGTTTCATGATCTCTGAGCCT 387
||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| || |||
Sbjct 292 TTACATTACATCATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCCGAACCT 351
Query 388 ATATCCAGTCTTTCAACACCACGAAGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTG 447
|| || |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 352 ATCTCTGGTCTTTCAACACCATGCGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTT 411
Query 448 AGGATGTTCCCAGTCGTGAGTTACTCACGTGAGATGAACTTGCCCGGGA-TTGGTGAAGA 506
|||||||||||||| ||||||||||||| |||||||||| |||| |||| |||| |||||
Sbjct 412 AGGATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACCTGCC-GGGACTTGGCGAAGA 470
Query 507 GTGTGTCATTTGTTTGTCGGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTG 566
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||
Sbjct 471 GTGTGTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGATCAGGATGCTCCCTAAGTG 530
Query 567 CAATCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACATCATTTGACATGTCC 626
| | ||||||||||||||||||||||| ||||||||||||||||| | |||||| |||||
Sbjct 531 CCACCATGGGTTCCATGTTCGTTGCATTGACAAGTGGCTTCAACAACGTTTGACTTGTCC 590
Query 627 GAAATGCAGACACTGTCTGGTTGAGACATGTCAAAAGATATTAGGTGACTTCAGTCAAGC 686
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 591 GAAATGCAGACACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGC 650
Query 687 TGATTCAA-TGGCATCAACACCAACAGAGAGCGTAATTGTCAGGATTGATCCTCTAGAAC 745
|||| ||| ||||| ||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct 651 TGAT-CAAGTGGCAGCAACACCAACAGAGAGCGTAATTGTCATGATTTCTCCTTTAGAAC 709
Query 746 CTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGCTAGATGC-AAGAAA-AGCAGAAACC 803
|||||||||||||||||||||| ||||||||||||||||||| |||| | | ||||||||
Sbjct 710 CTGAAGGAAGAGTAAACACTTTAAGAGAAAGCAGCTAGATGCCAAGAGAGA-CAGAAACC 768
Query 804 AACATCAATCTAGAATCTGTCAGC-AGTTAGATAGAAGATTTTAGATTCTAAGC 856
| || |||| ||||| ||| | |||||||||| ||||||| ||| || |||
Sbjct 769 ATCAAAAATC-AGAATTTGTGATTTAGTTAGATAGGAGATTTTTGAT-CTGAGC 820
> Ahg474064 jgi|Araly1|474064|fgenesh2_kg.1__4018__AT1G49220.1
Length=682
Score = 867 bits (469), Expect = 0.0
Identities = 616/687 (90%), Gaps = 9/687 (1%)
Strand=Plus/Plus
Query 101 AAAACATGTCTGCAAACGAGTTACCTGCTTCAGCTCAATCCTTGCAAGAACAATTC-CTT 159
|||| ||||||||| | ||||||||| ||||||||||| |||| ||||| ||| || | |
Sbjct 1 AAAA-ATGTCTGCATATGAGTTACCTTCTTCAGCTCAAGCCTTCCAAGAGCAACTCAC-T 58
Query 160 GGCAGTTTTGTCACTAGAAAGCTTCTTCTGCACGACCCATTTGACCACAACTCTCTTCGA 219
||| |||||||| |||||||||| ||||||||| |||| |||||||||||| ||| |||
Sbjct 59 GGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCGTTTGACCACAACACTCAACGA 118
Query 220 GTA-TTTGCGGTTGCACCATCTCCTCTCATAACACATGAGAACAACCTCAAAGGGAATGT 278
| | ||||||||| |||||||||||||||| || |||| ||||||||||| ||||||||
Sbjct 119 G-ACTTTGCGGTTTCACCATCTCCTCTCATTACCCATGTGAACAACCTCAGGGGGAATGT 177
Query 279 TCTGATGCTTCTCTCAGTTCTCATCTGTGGCATCATCTGTTGCCTTGGGTTACATTACAT 338
|||||||||||||||| | ||||| |||||||||||||| ||||| ||| | ||||||||
Sbjct 178 TCTGATGCTTCTCTCAATCCTCATTTGTGGCATCATCTGCTGCCTCGGGCTGCATTACAT 237
Query 339 CATTCGCTGTGCATTCAGACGTTCTTCACGTTTCATGATCTCTGAGCCTATATCC-AGTC 397
|||||| ||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 238 CATTCGTTGTGCATCCAGACGTTCTTCACGTTTCATGATCTCTGAGCCTATA-CCTAGTC 296
Query 398 TTTCAACACCACGAAGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTGAGGATGTTCC 457
| ||||| |||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 297 ATCCAACAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTCC 356
Query 458 CAGTCGTGAGTTACTCACGTGAGATGAACTTGCCCGGGATTGGTGAAGAGTGTGTCATTT 517
|||| ||||||||||||| ||||||||| |||| ||| |||| ||||||||||||||||
Sbjct 357 CAGTTGTGAGTTACTCACCAGAGATGAACCTGCCGGGGCTTGGCGAAGAGTGTGTCATTT 416
Query 518 GTTTGTCGGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTGCAATCATGGGT 577
||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 417 GTTTGTCCGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTGCAACCACGGAT 476
Query 578 TCCATGTTCGTTGCATAGACAAGTGGCTTCAACATCATTTGACATGTCCGAAATGCAGAC 637
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 477 TCCATGTTCGTTGCATAGACAAGTGGCTTCAACAGCATTTGACATGTCCGAAATGCAGAC 536
Query 638 ACTGTCTGGTTGAGACATGTCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAATGG 697
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 537 ACTGTCTGGTCGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAGTTG 596
Query 698 CATCA-ACACCAACAGAGAGCGTAATTGTCAGGATTGATCCTCTAGAACCTGAAGGAAGA 756
| || | ||||||||| | ||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 597 CGGCAGA-ACCAACAGAAATCGTGATTGTCATGATTGCTCCTCTAGAACCTGAAGGAAGA 655
Query 757 GTAAACACTTTTAGAGAAAGCAGCTAG 783
|||||||||| |||||||| |||||||
Sbjct 656 GTAAACACTTGTAGAGAAATCAGCTAG 682
> Ahg929765 jgi|Araly1|929765|scaffold_302222.1
Length=696
Score = 412 bits (223), Expect = 2e-114
Identities = 439/541 (81%), Gaps = 23/541 (4%)
Strand=Plus/Plus
Query 257 AGAACAACCTCAAAGGGAATGTTCTGATGCTTCTCTC-AGTTCTCATCTGTGGCATCATC 315
|||||||| | | || ||| |||| ||||| ||||| | | || | || || ||||||
Sbjct 156 AGAACAACTTGAGCGGCAATATTCTCATGCTGCTCTCTA-TCCTTTTGTGCGGTATCATC 214
Query 316 TGTTGCCTTGGGTTACATTACATCATTCGCTGTGCATTCAGACGTTCTTC-ACGTTTCAT 374
|| | ||| ||||| |||||||| || || || |||||||||||||| || | |||| ||
Sbjct 215 TGCTCCCTCGGGTTGCATTACATAATACGTTGCGCATTCAGACGTTC-TCGAAGTTTTAT 273
Query 375 GATCTCTGAGCCTATATCCAGT-CTTTCAACACCACGAAG-TTCAT---CAAACAAAGGA 429
||||||||| || || || | | | || |||||| | || ||||| ||||||||||
Sbjct 274 GATCTCTGATCCCATCTCTA-TCCCATCCACACCAAG-AGATTCATCAGCAAACAAAGGG 331
Query 430 ATCAAGAAGAAAGCTCTGAGGATGTTCCCAGTCGTGAGTTACTCACGTGAGATGAACTTG 489
||||||||||||||||| | |||||||||||| |||| |||||||| |||||| ||| |
Sbjct 332 ATCAAGAAGAAAGCTCTCAAGATGTTCCCAGTTGTGAATTACTCACCTGAGATTAACCAG 391
Query 490 CCCGGGATTGGTGAAGAGTGTGTCATTTGTTTGTCGGATTTTGTTTCTGGTGAACAGCTC 549
|| ||| ||||||||||||||||||| || ||||| ||||||||| ||| ||||||||
Sbjct 392 CCAGGGCTTGGTGAAGAGTGTGTCATCTGCTTGTCTGATTTTGTTGCTGAAGAACAGCT- 450
Query 550 A-GGCTGCTCCCCAAGTGCAATCATGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCA 608
| | ||||| |||||||| || || |||||||| ||||| ||||| ||||| |||||| |
Sbjct 451 ACGTCTGCTTCCCAAGTGTAACCACGGGTTCCACGTTCGCTGCATCGACAAATGGCTT-A 509
Query 609 -ACATCATTTGACATGTCCGAAATGCAGACACTGTCTGGTTGAGACATGTCAAAAGATAT 667
|| ||| |||| ||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 510 CGCAACATATGACTTGTCCGAAATGCAGACACTGTCTGGTTGATACATGCCAAAAGGTCT 569
Query 668 TAGGTGACTTC-A-GTCAAGCTGATTCAA-TGGCATCAACACCAACAGAGAGCGTA-ATT 723
|| |||||| | | | || |||||| ||| ||||| ||||| |||| |||||| || ||
Sbjct 570 TAAGTGACTGCGATG-CA-GCTGAT-CAAGTGGCAGCAACATCAACGGAGAGCATAGATA 626
Query 724 GTCAGGATTGATCCTCTAGAACCTGAAGGAAGAGTAAACACTTTTAGAGAAAGCAGCTAG 783
|||| |||| ||||||||||||||||| ||||||| |||||||||| |||||||||||
Sbjct 627 -TCAGAATTGCTCCTCTAGAACCTGAAGCAAGAGTAGCCACTTTTAGATAAAGCAGCTAG 685
Query 784 A 784
|
Sbjct 686 A 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5