BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49220.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474064 jgi|Araly1|474064|fgenesh2_kg.1__4018__AT1G49220.1 948 0.0
Ahg474063 jgi|Araly1|474063|fgenesh2_kg.1__4017__AT1G49210.1 869 0.0
Ahg474062 jgi|Araly1|474062|fgenesh2_kg.1__4016__AT1G49200.1 850 0.0
> Ahg474064 jgi|Araly1|474064|fgenesh2_kg.1__4018__AT1G49220.1
Length=682
Score = 948 bits (513), Expect = 0.0
Identities = 603/647 (93%), Gaps = 4/647 (1%)
Strand=Plus/Plus
Query 9 AAAAATGTCTGCAAATGAGTTACCTTCTTCAGCTCAAGCCTTCCAAGAACAATTC-CTTG 67
||||||||||||| |||||||||||||||||||||||||||||||||| ||| || | ||
Sbjct 1 AAAAATGTCTGCATATGAGTTACCTTCTTCAGCTCAAGCCTTCCAAGAGCAACTCAC-TG 59
Query 68 GCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACACTCAACGAG 127
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 GCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCGTTTGACCACAACACTCAACGAG 119
Query 128 CCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGGAATGTTA 187
|||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 120 ACTTTGCGGTTTCACCATCTCCTCTCATTACCCATGTGAACAACCTCAGGGGGAATGTTC 179
Query 188 TGATGCTTCTCTCAATCCTCATTTGTGGCATTATCTGCTGCCTCGGGTTACATTACATCA 247
||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 180 TGATGCTTCTCTCAATCCTCATTTGTGGCATCATCTGCTGCCTCGGGCTGCATTACATCA 239
Query 248 TTCGTTGTGCACT-CAGACGTTCTACACGTTTCATGATCTCCGAGCCTGTACCAAGTCTT 306
||||||||||| | |||||||||| |||||||||||||||| |||||| |||| |||| |
Sbjct 240 TTCGTTGTGCA-TCCAGACGTTCTTCACGTTTCATGATCTCTGAGCCTATACCTAGTCAT 298
Query 307 TCGTCAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTCCCA 366
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CCAACAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTCCCA 358
Query 367 GTTGTGAGTTACTCACCTGAGATGAACCTGCCAGGGCTTGACGAAGAGTGTGTCATTTGT 426
||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||
Sbjct 359 GTTGTGAGTTACTCACCAGAGATGAACCTGCCGGGGCTTGGCGAAGAGTGTGTCATTTGT 418
Query 427 TTGTCTGATTTTGTTTCCGGTGAACAGCTCAGGCTGCTCCCCAAGTGTAACCACGGGTTC 486
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 419 TTGTCCGATTTTGTTTCTGGTGAACAGCTCAGGCTGCTCCCCAAGTGCAACCACGGATTC 478
Query 487 CATGTTCGTTGCATAGACAAGTGGCTTCAACAACATCTGACTTGTCCAAAATGCAGAAAC 546
|||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||| ||
Sbjct 479 CATGTTCGTTGCATAGACAAGTGGCTTCAACAGCATTTGACATGTCCGAAATGCAGACAC 538
Query 547 TGTCTGGTTGAGACGTGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAGTTACG 606
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 TGTCTGGTCGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCAGTTGCG 598
Query 607 GCAGAACCAACAGAGATCGTAATTGTCACGATTGTTCCTCTAGAACC 653
|||||||||||||| ||||| ||||||| ||||| ||||||||||||
Sbjct 599 GCAGAACCAACAGAAATCGTGATTGTCATGATTGCTCCTCTAGAACC 645
> Ahg474063 jgi|Araly1|474063|fgenesh2_kg.1__4017__AT1G49210.1
Length=783
Score = 869 bits (470), Expect = 0.0
Identities = 596/657 (91%), Gaps = 7/657 (1%)
Strand=Plus/Plus
Query 1 CAAAGAGT-AAAAATGTCTGCAAATGAGTTACCTTCTTCAGCTCAAGCCTTCCAAGAACA 59
||| |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 87 CAAGGAGTAAAAAATGTCTGTAAATGAGTTACCTTCTTCAGCTCAATACTTCCAAGAAGG 146
Query 60 ATTCCTTGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACAC 119
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 147 ATTCCTTGGCGGTTTTGTCTCTAGAAAGCTTCTTCTGCACGACCCATTTGACCACAACTC 206
Query 120 TCAACGAGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGG 179
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 207 TCTACGAGTCTTAGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGAGG 266
Query 180 GAATGTTATGATGCTTCTCTCAATCCTCATTTGTGGCATTATCTGCTGCCTCGGGTTACA 239
||||||| |||||||||||||| ||||||| || ||||| ||||| ||||| ||||||||
Sbjct 267 GAATGTTTTGATGCTTCTCTCAGTCCTCATCTGCGGCATCATCTGTTGCCTTGGGTTACA 326
Query 240 TTACATCATTCGTTGTGCACTCAGACGTTCTACACGTTTCATGATCTCCGAGCCTGTA-C 298
||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||| || |
Sbjct 327 TTACATCATTCGTTGTGCATTCAGACGTTCTTCACGTTTCATCATCTCTGAGCCTATATC 386
Query 299 CAAGTCTTTC-GTCAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGA 357
|| ||||| | | || |||| ||||||||| ||||||||||||||||||||||||| ||
Sbjct 387 CA-GTCTTCCCG-CACCACGAGGTTCATCAGACAAAGGAATCAAGAAGAAAGCTCTCAGG 444
Query 358 ATGTTCCCAGTTGTGAGTTACTCACCTGAGATGAACCTGCCAGGGCTTGACGAAGAGTGT 417
|||||||| || ||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 445 ATGTTCCCGGTCGTGAGTTACTCACGTGAGATGAACCTGCCGGGGCTTGATAAAGAGTGT 504
Query 418 GTCATTTGTTTGTCTGATTTTGTTTCCGGTGAACAGCTCAGGCTGCTCCCCAAGTGTAAC 477
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 505 GTCATTTGTTTGTCGGATTTTGTTTCCGGTGAACAGCTCAGGCTTCTCCCCAAGTGCAAC 564
Query 478 CACGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATCTGACTTGTCCAAAA 537
||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||
Sbjct 565 CACGGGTTCCATGTTCGTTGCATAGACAAGTGGCTTCGACAACATTTGACATGTCCGAAA 624
Query 538 TGCAGAAACTGTCTGGTTGAGACGTGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGAT 597
|| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 625 TGAAGACACTGTCTGGTTGAGACATGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGAT 684
Query 598 TCAGTTACGGCAGA-ACCAACAGAGATCGTAATTGTCACGATTGTTCCTCTAGAACC 653
||| | | ||| | ||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 685 TCAATGGCAGCA-ACACCAACAGAGAGCGTAATTGTCAGGATTGCTCCTCTAGAACC 740
> Ahg474062 jgi|Araly1|474062|fgenesh2_kg.1__4016__AT1G49200.1
Length=918
Score = 850 bits (460), Expect = 0.0
Identities = 591/653 (91%), Gaps = 13/653 (2%)
Strand=Plus/Plus
Query 9 AAAAATGTCTGCAAATGAGTTA-C--CTTCTTCAGCTCAAGCCTTCCAAGAACAATTCCT 65
||||||| |||||||||| ||| | |||||||||| |||||||||||||| |||| |||
Sbjct 63 AAAAATGGCTGCAAATGAATTAGCTTCTTCTTCAGCACAAGCCTTCCAAGAGCAATCCCT 122
Query 66 TGGCGGTTTTGTCTCTAGAAAGCTGCTTCTGCACAACCCATTTGACCACAACACTCAACG 125
| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 123 TAGAGGTTTTGTCTCTAGAAAGCTTCTTCTGCACAATCCATTTGACCACAACACTCAACG 182
Query 126 AGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGGAATGT 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGCCTTTGCGGTTGCACCATCTCCTCTCATAACCCATGAGAACAACCTCAGTGGGAATGT 242
Query 186 TATGATGCTTCTCTCAATCCTCATTTGTGGCATTATCTGCTGCCTCGGGTTACATTACAT 245
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 243 CCTGATGCTTCTCTCAATCCTCATCTGTGGCATCATCTGTTGCCTCGGGTTACATTACAT 302
Query 246 CATTCGTTGTGCACTCAGACGTTCTACACGTTTCATGATCTCCGAGCCTGTAC-CAAGTC 304
||||||||||||| |||||||| || || |||||||||||||||| ||| | | | |||
Sbjct 303 CATTCGTTGTGCATTCAGACGTACTTCAAGTTTCATGATCTCCGAACCTAT-CTCTGGTC 361
Query 305 TTTCGTCAACACGGGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGAATGTTCC 364
|||| || || | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 362 TTTCAACACCATGCGGTTCATCAAACAAAGGAATCAAGAAGAAAGCTCTTAGGATGTTCC 421
Query 365 CAGTTGTGAGTTACTCACCTGAGATGAACCTGCCAGGG-CTTGACGAAGAGTGTGTCATT 423
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 422 CAGTTGTGAGTTACTCACCTGAGATGAACCTGCC-GGGACTTGGCGAAGAGTGTGTCATT 480
Query 424 TGTTTGTCTGATTTTGTTTCCGGTGAACAGCTCAGGCTGCTCCCCAAGTGTAACCACGGG 483
|||||||| ||||||||||||||||||||| ||||| ||||||| ||||| |||| |||
Sbjct 481 TGTTTGTCGGATTTTGTTTCCGGTGAACAGATCAGGATGCTCCCTAAGTGCCACCATGGG 540
Query 484 TTCCATGTTCGTTGCATAGACAAGTGGCTTCAACAACATCTGACTTGTCCAAAATGCAGA 543
||||||||||||||||| ||||||||||||||||||| | |||||||||| |||||||||
Sbjct 541 TTCCATGTTCGTTGCATTGACAAGTGGCTTCAACAACGTTTGACTTGTCCGAAATGCAGA 600
Query 544 AACTGTCTGGTTGAGACGTGCCAAAAGATATTAGGTGACTTCAGTCAAGCTGATTCA-GT 602
|||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||
Sbjct 601 CACTGTCTGGTTGAGACATGCCAAAAGATCTTAGGTGACTTCAGTCAAGCTGAT-CAAGT 659
Query 603 TACGGCAGA-ACCAACAGAGATCGTAATTGTCACGATTGT-TCCTCTAGAACC 653
| ||| | ||||||||||| ||||||||||| |||| | |||| |||||||
Sbjct 660 GGCAGCA-ACACCAACAGAGAGCGTAATTGTCATGATT-TCTCCTTTAGAACC 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5