BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49230.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923281 jgi|Araly1|923281|scaffold_104562.1 689 0.0
Ahg479387 jgi|Araly1|479387|fgenesh2_kg.3__2088__AT3G18777.1 418 3e-116
> Ahg923281 jgi|Araly1|923281|scaffold_104562.1
Length=481
Score = 689 bits (373), Expect = 0.0
Identities = 436/465 (94%), Gaps = 9/465 (2%)
Strand=Plus/Plus
Query 40 TATCTTAAAACTAAGTTATCATGTGCACTACCATTTCCATTTCCATTTCCACCATAAAAC 99
|||||||||||||||||||||||| |||||||| ||||| | | | |||||| ||||
Sbjct 1 TATCTTAAAACTAAGTTATCATGTCCACTACCACTTCCA----C-TCT-CACCATGAAAC 54
Query 100 CAACTGAGATCTTTCAAGAAATTCTTGGAAGTTCTTACTCAAGAAAATTACTATTTCATA 159
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 55 CAACTGAGTTCTTTCAAGAAATTATTGGAAGTTCTTACTCAAGAAAATTACTATTTCATA 114
Query 160 CCCATGATCAATCACCAACTCCAGCACCATCCCCATATGTAGGCGATAACAACTTTGATG 219
|||||||||||||||||||||| ||||||||||| |||||||||||| || |||||||||
Sbjct 115 CCCATGATCAATCACCAACTCCGGCACCATCCCCGTATGTAGGCGATGACCACTTTGATG 174
Query 220 CAAATGTTGTTATGGTCCTATCAGTCCTCTTATGTGCACTTGTTTGCTCACTTGGACTCA 279
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 175 CAAATGTTGTTATGGTCCTATCAGTCCTCTTATGTGCTCTCGTTTGCTCACTTGGACTCA 234
Query 280 ATTCTATAATAAGATGTGCCTTGAGGTGCTCCAATTTAGTACCATCTGAAGCTGGTGGTG 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ATTCTATAATAAGATGTGCCTTGAGGTGCTCCAATTTAGTACCATCTGAAGCTGGTG--- 291
Query 340 ACAACTATCCTGTTCGCTTGACCAACACAGGAGTCAAACGAAAAGCCTTGAAGAGTTTCC 399
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 292 ACAACTACCCCGTTCGCTTGACCAACACAGGAGTCAAACGAAAAGCCTTGAAGAGGTTCC 351
Query 400 AGACAGTAAGTTACTCTACTGAACTAAATCTGCCTGGCTTAGATACCGAGTGTGCTATCT 459
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 352 AGACAGTAAGTTACTCTACTGAACTGAATCTGCCTGGCTTAGATACCGAGTGTGCTATCT 411
Query 460 GTCTCTCGGAATTTGTAGCCGAGGAACGTGTGAAGCTGTTGCCGA 504
||||||||||||||||| |||| || |||||||||||| ||||||
Sbjct 412 GTCTCTCGGAATTTGTACCCGAAGAGCGTGTGAAGCTGCTGCCGA 456
> Ahg479387 jgi|Araly1|479387|fgenesh2_kg.3__2088__AT3G18777.1
Length=1137
Score = 418 bits (226), Expect = 3e-116
Identities = 355/415 (86%), Gaps = 17/415 (4%)
Strand=Plus/Plus
Query 212 CTTTGATGCAAATGTTGTTATGGTCCTATCAGTCCTCTTATGTGCACTTGTTTGCTCACT 271
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 289 CTTTGATGCAAATGTTGTCATGGTTCTATCAGTCCTCTTATGTGCACTAGTTTGCTCACT 348
Query 272 TGGACT-CAATTCTATAATAAGATGTGC-CTTGAGGTGCTCCAATTTAGTACCATCTGAA 329
|||||| | ||||||| ||||||||||| | |||||| |||||||||| || ||||||||
Sbjct 349 TGGACTGC-ATTCTATCATAAGATGTGCAC-TGAGGTACTCCAATTTATTATCATCTGAA 406
Query 330 GCTGGTGGTGAC-AACTATCCTGTTCGCTTGACCAACACAGGAGTCAAACGAAAAGCCTT 388
|| | ||||| | || | | || |||||| |||||||||| ||||||| |||||||||
Sbjct 407 GC---TAGTGACGAGCTCT-CAGTCCGCTTGGCCAACACAGGGGTCAAACAAAAAGCCTT 462
Query 389 GAAGAGTTTCCAGACAGTAAGTTACTCTACTGAACTAAATCTGCCTGGCTTAGATACCGA 448
||||||||||||||||||||| ||| || | ||||| || ||||||||| ||||||| ||
Sbjct 463 GAAGAGTTTCCAGACAGTAAGCTACACTGCAGAACTGAAGCTGCCTGGCCTAGATACAGA 522
Query 449 GTGTGCTATCTGTCTCTCGGAATTTGTAG-CCG-AGGAACGTGTGAAGCTGT-TGCCGAC 505
|||||| || ||||||||||| ||||| | ||| || | || || ||||| | |||| |
Sbjct 523 GTGTGCCATATGTCTCTCGGAGTTTGT-GTCCGGAG-AGCGAGTCAAGCT-TCTGCCAA- 578
Query 506 A-TGCCACCATGGATTCCATGTCCGTTGTATAGACAAGTGGCTTAGTTCACACTCGTCCT 564
| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |
Sbjct 579 AGTGCCACCATGGATTCCATGTCCGGTGTATAGACAAATGGCTCAGTTCACACTCATCGT 638
Query 565 GTCCCACCTGCAGGCACTGCCTCATCCAGACATGCGAGAAGATTGCCGACTGCAG 619
||||||| ||||||||||||||||| ||||| ||| | ||||| || | ||||||
Sbjct 639 GTCCCACGTGCAGGCACTGCCTCATTCAGACTTGCAAAAAGATAGCTGGCTGCAG 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5