BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49245.1
Length=512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481937 jgi|Araly1|481937|fgenesh2_kg.4__997__AT1G49245.1 501 2e-141
Ahg474066 jgi|Araly1|474066|fgenesh2_kg.1__4020__AT1G49245.1 490 4e-138
> Ahg481937 jgi|Araly1|481937|fgenesh2_kg.4__997__AT1G49245.1
Length=477
Score = 501 bits (271), Expect = 2e-141
Identities = 347/382 (91%), Gaps = 12/382 (3%)
Strand=Plus/Plus
Query 125 CTTCGTCGGATCGCGAATTCGAGCTTGAGAAAGAGATAAAGAGGCAAGAGGTTTCGTTAG 184
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 101 CTTCGTCGGGTCGCGAATTCGAGCTTGAGAAGGAGATAAAGAGGCAAGAGGTTTCGTTAG 160
Query 185 ATGAATTGAGCAGTCTCTCTTCTTCTCGAAGTATCTACCAGAAAAACGGTAACCTCTTCT 244
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 161 ATGAATTGAGCAGTCTCTCTTCTTCTCGAAGTGTCTACCAGAAAAACGGCAACCTCTTCT 220
Query 245 TCCTCACATC-AGCCGAGAAAGCGAAAATCTCTGCGCAGAAACAACTTGATTACGCTAAA 303
|||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 221 TCCTCACATCTA-CCGAGAAAGCGAAAACCTCTGCGCAGAAACAACTTGACTACGCTAAA 279
Query 304 TCTGAAATCAACAAGATTCGTTCGCAGAAATAAACAATGGAGATTTCTAGTTGCTGAAGA 363
|||||||||||||||||||||||||||| ||||||||| || | | ||||||||| |||
Sbjct 280 TCTGAAATCAACAAGATTCGTTCGCAGACATAAACAATAAAGCTCTGTAGTTGCTGGAGA 339
Query 364 TCCAAC-AAGG-CTGTTCCttttttttATGATGTATCTCTGAT-TA-TTGATGCTATATA 419
||||| || || || ||||||||||||| | | | |||| || ||||||||||||
Sbjct 340 TCCAAAGAACTTCTTTT--TTTTTTTTATGATTT-TGT-TGATATAATTGATGCTATATC 395
Query 420 AATTTTCATTAGTTCGTGTATGATCTT-GAACTATCTTGGAATTGCTTT-AAATTACTTG 477
||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||
Sbjct 396 AATTTTCATTAGTTCGTGTATGATCTTTGAATTGTCTTGGAATTGCTTGCAAATTACTTG 455
Query 478 ATTTTGATATGATAATCAGCTA 499
||||||||||||||||||||||
Sbjct 456 ATTTTGATATGATAATCAGCTA 477
> Ahg474066 jgi|Araly1|474066|fgenesh2_kg.1__4020__AT1G49245.1
Length=477
Score = 490 bits (265), Expect = 4e-138
Identities = 345/382 (90%), Gaps = 12/382 (3%)
Strand=Plus/Plus
Query 125 CTTCGTCGGATCGCGAATTCGAGCTTGAGAAAGAGATAAAGAGGCAAGAGGTTTCGTTAG 184
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 101 CTTCGTCGGGTCGCGAATTCGAGCTTGAGAAGGAGATAAAGAGGCAAGAGGTTTCGTTAG 160
Query 185 ATGAATTGAGCAGTCTCTCTTCTTCTCGAAGTATCTACCAGAAAAACGGTAACCTCTTCT 244
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 161 ATGAATTGAGCAGTCTCTCTTCTTCTCGAAGTGTCTACCAGAAAAACGGCAACCTCTTCT 220
Query 245 TCCTCACATC-AGCCGAGAAAGCGAAAATCTCTGCGCAGAAACAACTTGATTACGCTAAA 303
|||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 221 TCCTCACATCTA-CCGAGAAAGCGAAAACCTCTGCGCAGAAACAACTTGACTACGCTAAA 279
Query 304 TCTGAAATCAACAAGATTCGTTCGCAGAAATAAACAATGGAGATTTCTAGTTGCTGAAGA 363
|||||||||||||||||||||||||||| ||||||||| || | | ||||||||| |||
Sbjct 280 TCTGAAATCAACAAGATTCGTTCGCAGACATAAACAATAAAGCTCTGTAGTTGCTGGAGA 339
Query 364 TCCAAC-AAGG-CTGTTCCttttttttATGATGTATCTCTGAT-TA-TTGATGCTATATA 419
||||| || || || ||||||||||||| | | | |||| || ||||||||||||
Sbjct 340 TCCAAAGAACTTCTTTT--TTTTTTTTATGATTT-TGT-TGATATAATTGATGCTATATC 395
Query 420 AATTTTCATTAGTTCGTGTATGATCTT-GAACTATCTTGGAATTGCTTT-AAATTACTTG 477
||||||||||||||||||||||||||| ||| | ||||||||||| || ||||||||||
Sbjct 396 AATTTTCATTAGTTCGTGTATGATCTTTGAATTGTCTTGGAATTGGTTGCAAATTACTTG 455
Query 478 ATTTTGATATGATAATCAGCTA 499
|||||||||||||| |||||||
Sbjct 456 ATTTTGATATGATAGTCAGCTA 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18619927432
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5