BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49250.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919553 jgi|Araly1|919553|scaffold_100834.1 1868 0.0
Ahg337048 jgi|Araly1|337048|fgenesh1_pg.C_scaffold_1003613 1166 0.0
> Ahg919553 jgi|Araly1|919553|scaffold_100834.1
Length=2422
Score = 1868 bits (1011), Expect = 0.0
Identities = 1569/1835 (86%), Gaps = 51/1835 (3%)
Strand=Plus/Plus
Query 167 CAACTGAAAGT-GGCAGGATTGTCATCACTCATATTCTGTGTAACATGTTGAGAACCGTT 225
||| ||||||| ||| | ||||| || ||| |||||||||||||||||||||||||||||
Sbjct 592 CAAATGAAAGTGGGC-GAATTGTGATTACTGATATTCTGTGTAACATGTTGAGAACCGTT 650
Query 226 ATCGCCACTACTCCTGATGATTTGCTACCTACTGTTTATCTTGCTGCAAATGAGATTGCC 285
|| ||||| |||||||| |||||| | |||||||||| ||||| |||||||||||||||
Sbjct 651 ATTGCCACCACTCCTGAGGATTTGGTTGCTACTGTTTACCTTGCGGCAAATGAGATTGCC 710
Query 286 CCTGCTCATGAAGGTATTA-AATTGGGAATGGGTAAGGGTTCCTACATTATTAAGGCAAT 344
||||||||||||||| || |||||||||| ||| |||| | | | ||||| ||||| ||
Sbjct 711 CCTGCTCATGAAGGT-GTAGAATTGGGAATTGGTGAGGG-TAC-A-ATTATCAAGGCTAT 766
Query 345 CTCTGAAGCTTTTGGTAGAACTGAGTCCCACGTTGAGCAGCAATATACGCAACTGGGAGA 404
||||||||||||||||||||||||| || ||| || ||||| ||||| ||||||||||
Sbjct 767 CTCTGAAGCTTTTGGTAGAACTGAGGATCATGTTAAGAAGCAAAATACGGAACTGGGAGA 826
Query 405 CTTGGGGCTTGTAGCAAATGGGAGCCGTTCCTCTCAGACTATGATTTTCATGCCCAAACC 464
|||||||||||| ||||| || |||||||| ||||||||||||| |||| |||| ||||
Sbjct 827 CTTGGGGCTTGTTGCAAAAGGAAGCCGTTCAACTCAGACTATGATGTTCAAGCCCGAACC 886
Query 465 ATTAACTGTTGTCAAGGTTGCT-GATACACTTCGCCTAATTGCTAAGGAATCTGGAAAAG 523
||| ||||||||||||| || | ||||| |||| | ||||||||||||| ||||||||
Sbjct 887 ATTGACTGTTGTCAAGG-TGTTCGATACGTTTCGACAAATTGCTAAGGAAAGTGGAAAAG 945
Query 524 GTAGTAAGGATAAGAAGAAGGATCTAATGAAGGCACTTCTTGTGGCAACTACAGATTGTG 583
||| || || ||||||||| ||| |||||||||||||||||||||||| ||||| ||||
Sbjct 946 ATAGCAATGAAAAGAAGAAGAATCGAATGAAGGCACTTCTTGTGGCAACAACAGACTGTG 1005
Query 584 AACCTCTTTACTTAACTCGTTTACTTCAGG-ATAATTTGCGGTTAGGGTTCTCACGTCAA 642
|||| ||||||||||| ||||||||||||| | || |||||||||||||||||| ||||
Sbjct 1006 AACCACTTTACTTAACACGTTTACTTCAGGCA-AAATTGCGGTTAGGGTTCTCAGGTCAG 1064
Query 643 ACTGTTTTAGCTGCCTTGGGACAGGCTGCTGTATATAACGAAGAGCATTCTAAGCCGCCC 702
||||| ||||||||||||||||| |||||||||||||| |||||||| || ||||| |||
Sbjct 1065 ACTGTCTTAGCTGCCTTGGGACAAGCTGCTGTATATAATGAAGAGCACTCAAAGCCACCC 1124
Query 703 CCAAATATCAAGAATCCTTTAGATGAGGCTGC-AACGATTGTTAAAGAAGTATTCT-CAA 760
||||||| |||| ||||||||| |||||||| || |||||||||| ||||||| | |
Sbjct 1125 CCAAATACCAAGTCTCCTTTAGAAGAGGCTGCGAA-GATTGTTAAACAAGTATT-TACGG 1182
Query 761 TGCTTCCTGTCTATGACATTATTGTTGGTGCTCTTCTAACTAGTGGTGTATGGAATCTTC 820
| |||||||||||||||||||||||| |||||||||||| |||| || ||||||||||
Sbjct 1183 TACTTCCTGTCTATGACATTATTGTTCCTGCTCTTCTAACCGGTGGAGTGTGGAATCTTC 1242
Query 821 CTAAAACTTGTAACCTCACACTCGGTGTTCCAGTTAGG-CCCATGCTTGCAAAAGCAACT 879
| |||||||||||| | ||| | ||||||||| || || ||||||||||||||| ||||
Sbjct 1243 CAAAAACTTGTAACTTTACATTGGGTGTTCCAATT-GGACCCATGCTTGCAAAACCAACC 1301
Query 880 ACAA-GAGTAG-ATCTCATACTTG-AGAAA-TTCAAGGACACT-GTTTTCACA-GCTGAA 933
| || | |||| | |||| || | ||| ||| |||||| | ||||||||| || |||
Sbjct 1302 A-AAGGTGTAGCA-GAGATAC-TGAATAAATTTC-AGGACA-TCGTTTTCACATGC-GAA 1355
Query 934 TACAAATATGATGGTGAACGTGCACAGATATATTATATGGAGGATGGTACAGTCGAGATA 993
|||||||||||||| ||||||||||||||| ||| | |||| ||||||||| | ||||||
Sbjct 1356 TACAAATATGATGGGGAACGTGCACAGATACATTTTTTGGAAGATGGTACATTTGAGATA 1415
Query 994 T-TCAGTAGACATGCTGAAAGAAACACTGGCAAGTACCCTGATGTTGCTCTTGTGTTATC 1052
| | ||| || ||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 1416 TAT-AGTCGAAATGCTGAAAGAAACACTGGGAAGTACCCGGATGTTGCTCTTGCATTATC 1474
Query 1053 AAGGTTAAAGAAGCCCACTGTGAAATCTTTTATTCTGGATTGCGAGGTTGTCACCTTCAA 1112
||| |||||||||||| ||||||||||||||||||||||||| |||||||| | ||| |
Sbjct 1475 AAGATTAAAGAAGCCCTCTGTGAAATCTTTTATTCTGGATTGTGAGGTTGTTGCTTTCGA 1534
Query 1113 CAGAGA-AAAAGAGAAAATTCTTCCACTCCAGA--GT-A-CA--CGAGCCCATAAAAATG 1165
||| || |||| ||||||||||||| |||||| | | || ||||||| ||||||||
Sbjct 1535 CAGGGAGAAAA-AGAAAATTCTTCCGTTCCAGATTTTGAGCACTCGAGCCCGTAAAAATG 1593
Query 1166 TGAATGTCAGTGATATCAAGGTTGGCGTATGCGTCTTTGCTTTTGATATATTATACCTAA 1225
||||||||| |||||||||||||||||||||| ||||||||||||| || ||||| ||||
Sbjct 1594 TGAATGTCAATGATATCAAGGTTGGCGTATGCATCTTTGCTTTTGACATGTTATATCTAA 1653
Query 1226 ATGGCCAACTACTTATCCATGAGAATCTGAACATTCGCCGAGAGAAGCTACACGATTCAT 1285
||||||||| ||||||||| |||||||| || |||||||||||||||||| |||| ||||
Sbjct 1654 ATGGCCAACAACTTATCCAAGAGAATCTTAATATTCGCCGAGAGAAGCTATACGAATCAT 1713
Query 1286 TTGAGGAAGATCTTGGGTATTTCCAGTTTGCAACTGCTCTAACATCCAACGATATTGGTG 1345
|||| ||||||| ||||||||||||||||||||||||||||||||| | |||||| | ||
Sbjct 1714 TTGAAGAAGATCCTGGGTATTTCCAGTTTGCAACTGCTCTAACATCTAGCGATATCGATG 1773
Query 1346 AATTACAAGA-GTTTCTTAAAGCTTCTATTGACATAGGATGTGAAGGTTTAATGAT-AAA 1403
|| | || || ||||||| | |||||| |||| | || |||||||||||||| || |||
Sbjct 1774 AAATCCA-GAAGTTTCTTGACGCTTCTGTTGATGTTGGCTGTGAAGGTTTAATCATTAAA 1832
Query 1404 GTCATTGTACTCAAATGCAACCTATGAGCCTGCAAAGAGATCAAATAATTGGCTAAAACT 1463
||||| |||| |||| |||||||||||||| ||| |||| |||||||||||||||||
Sbjct 1833 A-CATTGAACTCGGATGCTACCTATGAGCCTGCCAAGCGATCGAATAATTGGCTAAAACT 1891
Query 1464 GAAGAAGGACTATATGGACAACATTGGAGATTCCGTGGATCTTGTACCAATAGCTACGTT 1523
|||||| ||||||||||||| |||||| || || |||||||||||||||| ||| | ||
Sbjct 1892 GAAGAAAGACTATATGGACAGCATTGGGGACTCAATGGATCTTGTACCAATTGCTGCTTT 1951
Query 1524 CCATGGACGTGGGAAACGCACAGGTTTCTTTGGTGCATATTTACTAGCGTGCTACGATGT 1583
|||||||||||| |||||||||||| ||| |||||||| |||||| || ||||| |||||
Sbjct 1952 CCATGGACGTGGCAAACGCACAGGTGTCTATGGTGCATTTTTACTCGCTTGCTATGATGT 2011
Query 1584 TGATAAGGAAGAATTCCAGAGCATTTGTAAAATTGGTACTGAATTTTCTGATGTGGA-GC 1642
|||||||||||| || ||||||||||||||||| ||||||| ||||||||||| | ||
Sbjct 2012 TGATAAGGAAGAGTTTCAGAGCATTTGTAAAATCGGTACTGGATTTTCTGATGCC-ATGC 2070
Query 1643 TTCAAGATTTGTCTTCCAGTCTTTGCTCTAAAGTGATTGCTACTCCGAAACAATACTACC 1702
|| | || ||| ||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 2071 TTGACGAACGGTCGTCCAGTCTTCGCTCTCAAGTGATTGCTACTCCAAAACAATACTACC 2130
Query 1703 AAGTCG-ATAACGATC-TCAATCCAGATGTCTGGTTGGAGCCCACCGAGGTGTGGGAAGT 1760
||| | | | | | | ||||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct 2131 GAGTTGGAGA-C-AGCCTCAATCCAGATGTTTGGTTTGAGCCCACTGAGGTCTGGGAAGT 2188
Query 1761 GAAAGCAGCTGACTTGACAGTTAGCCCTGTATATCGTGAAGCTATTGGAATTGTGGACCC 1820
||||||||||||||||||| |||||||||| | |||| ||||| || |||||||| ||
Sbjct 2189 GAAAGCAGCTGACTTGACAATTAGCCCTGTGCACCGTGCAGCTACCGGCATTGTGGATCC 2248
Query 1821 TGACAAGGGAATTTCTCTACGATTTCCTCGTCTAGTCCGTATACGGAAAGACAAGAATCC 1880
||| |||||||||||||| || |||||||||||| | ||| ||||| ||||||| || ||
Sbjct 2249 TGATAAGGGAATTTCTCTTCGTTTTCCTCGTCTACTTCGTGTACGGGAAGACAAAAAGCC 2308
Query 1881 AGAGGAAGCAACAACATCTGACCAGATTGCTGAAATGTATCAAGCTCAGAAACACAATCA 1940
|||||| |||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 2309 AGAGGATGCAACATCATCTGAGCAGATTGCTGATATGTACCAAGCTCAGAAACACAATCA 2368
Query 1941 ACCAAGCAATCAAGGCAAAG-TGGACGACGATTGA 1974
||||| ||| ||| ||||| || |||||||||||
Sbjct 2369 TCCAAGTAATGAAGTCAAAGGTG-ACGACGATTGA 2402
> Ahg337048 jgi|Araly1|337048|fgenesh1_pg.C_scaffold_1003613
Length=1878
Score = 1166 bits (631), Expect = 0.0
Identities = 732/780 (94%), Gaps = 10/780 (1%)
Strand=Plus/Plus
Query 671 CTGTATATAACGAAGAGCATTCTAAGCCGCCCCCAAATATCAAGAATCCTTTAGATGAGG 730
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 602 CTGTATATAACGAAGAGCATTCAAAGCCACCCCCAAATATCAAGAATCCTTTAGATGAGG 661
Query 731 CTGCAACGATTGTTAAAGAAGTATTCTCAATGCTTCCTGTCTATGACATTATTGTTGGTG 790
|||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 662 CTGCAACGATTGTTAAAGAAGTATTCTCTGTGCTTCCTGTCTACGACCTTATTGTTGGTG 721
Query 791 CTCTTCTAACTAGTGGTGTATGGAATCTTCCTAAAACTTGTAACCTCACACTC-GGTGTT 849
||||||||||||||||||| ||||||||||||||||||||||| || |||| | |||||
Sbjct 722 CTCTTCTAACTAGTGGTGTGTGGAATCTTCCTAAAACTTGTAAACTTACAC-CGGGTGTC 780
Query 850 CCAGTTAGGCCCATGCTTGCAAAAGCAACTACAAGAGTAGATCTCATACTTGAGAAATTC 909
|||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 CCAGTTAGACCCAGGCTTGCAAAAGCAACTACAAGTGTAGATCTCATACTTGAGAAATTC 840
Query 910 AAGGACACTGTTTTCACAGCTGAATACAAATATGATGGTGAACGTGCACAGATATATTAT 969
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 GGGGACACCGTTTTCACAGCTGAATACAAATATGATGGTGAACGTGCACAGATACATTAT 900
Query 970 ATGGAGGATGGTACAGTCGAGATATTCAGTAGACATGCTGAAAGAAACACTGGCAAGTAC 1029
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATGGAGGATGGTACAATCGAGATATTCAGTAGACATGCTGAAAGAAACACTGGCAAGTAC 960
Query 1030 CCTGATGTTGCTCTTGTGTTATCAAGGTTAAAGAAGCCCACTGTGAAATCTTTTATTCTG 1089
|||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 961 CCTGATGTTGCTCTTGCGTTATCAAGGTTTAAGAAGCCCGCTGTAAAATCTTTTATTCTG 1020
Query 1090 GATTGCGAGGTTGTCACCTTCAACAGAGA-AAAAGAGAAAATTCTTCCACTCCAGA--GT 1146
|||||||||||||| |||||||||| || ||| ||||||||||||| ||||||| |
Sbjct 1021 GATTGCGAGGTTGTTGCCTTCAACAGGGAGGAAA-AGAAAATTCTTCCGCTCCAGACTTT 1079
Query 1147 -A-CA--CGAGCCCATAAAAATGTGAATGTCAGTGATATCAAGGTTGGCGTATGCGTCTT 1202
| || |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 GAGCACTCGAGCCCATAAAAATGTGAATGTCAGTGATATCAAGGTTGGCGTATATGTCTT 1139
Query 1203 TGCTTTTGATATATTATACCTAAATGGCCAACTACTTATCCATGAGAATCTGAACATTCG 1262
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1140 TGCTTTTGATATATTATATCTAAATGGCCAACTACTTATCCAGGAGAATCTGAATATTCG 1199
Query 1263 CCGAGAGAAGCTACACGATTCATTTGAGGAAGATCTTGGGTATTTCCAGTTTGCAACTGC 1322
||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1200 CCGAGAGAAGCTATACGATTCATTTGAGGAAGATCCTGGGTATTTCCAATTTGCAACTGC 1259
Query 1323 TCTAACATCCAACGATATTGGTGAATTACAAGAGTTTCTTAAAGCTTCTATTGACATAGG 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 TCTAACATCCAACGATATTGGTGAATTACAAGAGTTTCTTAAAGCTTCTATTGACATTGG 1319
Query 1383 ATGTGAAGGTTTAATGATAAAGTCATTGTACTCAAATGCAACCTATGAGCCTGCAAAGAG 1442
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1320 ATGTGAAGGTTTAATGATAAAGTCATTGTACTCGAATGCAACCTATGAGCCTGCAAAGAG 1379
Score = 713 bits (386), Expect = 0.0
Identities = 459/494 (93%), Gaps = 6/494 (1%)
Strand=Plus/Plus
Query 1485 CATTGGAGATTCCGTGGATCTTGTACCAATAGCTACGTTCCATGGACGTGGGAAACGCAC 1544
|||||||||||| |||||||| |||||||| || | |||||||||||||||||||||||
Sbjct 1380 CATTGGAGATTCTGTGGATCTAGTACCAATTGCGGCTTTCCATGGACGTGGGAAACGCAC 1439
Query 1545 AGGTTTCTTTGGTGCATATTTACTAGCGTGCTACGATGTTGATAAGGAAGAATTCCAGAG 1604
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 1440 AGGTTTCTTTGGTGCATTTTTACTAGCGTGCTACGATGTCGACAAGGAAGAATTCCAGAG 1499
Query 1605 CATTTGTAAAATTGGTACTGAATTTTCTGATGTGGAGCTTCAAGATTTGTCTTCCAGTCT 1664
|||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||
Sbjct 1500 CATTTGTAAAATTGGTACTGGATTTTCTGACGCGGAGCTTCAAGAGCTGTCTTCCAGTCT 1559
Query 1665 TTGCTCTAAAGTGATTGCTACT-CCGAAACAATACTACCAAGTCGATAACGATCTCAATC 1723
|| ||||||||||||||||| | || ||||||||||||||||||||| ||| ||||||||
Sbjct 1560 TTTCTCTAAAGTGATTGCTA-TACCAAAACAATACTACCAAGTCGATGACGGTCTCAATC 1618
Query 1724 CAGATGTCTGGTTGGAGCCCACCGAGGTGTGGGAAGTGAAAGCAGCTGACTTGACAGTTA 1783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1619 CAGATGTCTGGTTGGAGCCCACCGAGGTGTGGGAAGTGAAAGCAGCTGACTTGACAATTA 1678
Query 1784 GCCCTGTATATCGTGAAGCTATTGGAATTGTGGACCCTGACAAGGGAATTTCTCTACGAT 1843
|||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 1679 GCCCTGTACATCGTGCAGCTATCGGAATTGTGGACCCTGATAAGGGAATTTCTCTACGTT 1738
Query 1844 TTCCTCGTCTAGTCCGTATACGGAAAGACAAGAATCCAGAGGAAGCAACAACATCTGACC 1903
|||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 1739 TTCCTCGTTTAGTCCGTGTGCGGAAAGACAAGAATCCAGAGGAAGCAACATCATCTGACC 1798
Query 1904 AGATTGCTGAAATGTATCAAGCTCAGAAA--CACAATCAACCAAGCAATCAAGGCAAAG- 1960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1799 AGATTGCTGAAATGTATCAAGCTCAGAAAAACACAATCAACCAAGCAATCAAGGCAAAGG 1858
Query 1961 TGGACGACGATTGA 1974
|| |||||| ||||
Sbjct 1859 TG-ACGACGGTTGA 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5