BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49270.1
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314348 jgi|Araly1|314348|fgenesh1_pm.C_scaffold_1003128 3243 0.0
Ahg929770 jgi|Araly1|929770|scaffold_302227.1 861 0.0
Ahg919851 jgi|Araly1|919851|scaffold_101132.1 191 2e-47
> Ahg314348 jgi|Araly1|314348|fgenesh1_pm.C_scaffold_1003128
Length=2103
Score = 3243 bits (1756), Expect = 0.0
Identities = 1996/2111 (95%), Gaps = 19/2111 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAGGGGCAATCCCCGGAGAACTCACCGCCAGctcctcctcctccttctcctccg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGGAGGGGCAATCCCCGGAGAACTCACCGCCGGCTCCTCCTCCTCCTTCTCCTCCG 60
Query 61 tcacctccctcttccaacgatcaacaaacaacatctcctcctccttccGACAATCAAGAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCACCTCCCTCTTCCAACGATCAACAAACAACATCTCCTCCTCCTTCCGAAAATCAAGAA 120
Query 121 ACAACATCTCCTCCTCCTCCATCTTCACCTGACATAGCTCCTCCACCTCAACAACAACAA 180
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 121 ACAACATCTCCTCCTCCTCCATCTTCCCCTGACCTAGCTCCTCCACCTCAACAACAACAA 180
Query 181 GAATCACCACCTCCTCCTTTGCCGGAAAATTCCTCCGATGGTTCTTCCTCGTCGTCTCCA 240
||||||||||||||||||| |||||| ||||||| |||||||||||||| |||| |||||
Sbjct 181 GAATCACCACCTCCTCCTTCGCCGGATAATTCCTTCGATGGTTCTTCCTTGTCGCCTCCA 240
Query 241 CCACCACCGTCTGACTCA------TCCTCACAATCACAATCTCCACCTCCTCCTTCAACG 294
||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 241 CCACCACTGTCTGACTCATCCTCCTCCTCACAATCACAATCTCCACCTCCTCCTTCACCC 300
Query 295 TCCCCGCCACAGCAGAGTGACAACAATGGCAACAAAGGAAACAACAATGAGAACAACAAA 354
|||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 301 TCCCCGCCTCAGCACAGTGACAACAATGGCAACAAAGGAAACAACAACGAAAACAACAAT 360
Query 355 GGTAATGATGGAAGCAGCGGCGATGGAGGAAACAAGAACA-TGTCTCATACTCCTCCACC 413
|| ||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||
Sbjct 361 GGAAATGATGGAAGCAACGGTGATGGAGGAAACAAGAACACT-TCTCATACTCCTCCACC 419
Query 414 ACCTTCTAAGACTTCGGACCATAGCTCTCACTCGCAACCAAGATCGCTGGCGCCGCCTAC 473
| | |||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||
Sbjct 420 AGCGTCTAAGACTTCGGACCATAGCTCTCAGTCGCCACCAAAATCGCTGGCGCCACCTAC 479
Query 474 AAGCAACAGTGGCTCAAATTCGTCAAGTAATGATGGTTTGAACATTGGTGCTGTTATAGG 533
||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 480 AAGCAACGGTGGCTCGAATTCGTCAAGTAATGATGGTCTGAACATCGGTGCTGTTATAGG 539
Query 534 ACTTGTGGCTGCAGCTGGAATTTTATTCATTGTCATGATCTTGTTATGTGTCTGTTGTTT 593
||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 540 ACTTGTGGCGGCAGCTGGGCTTTTGTTCATCGTCATGATCTTGTTATGTGTCTGTTGTTT 599
Query 594 TCGGAAGAAGAAGAAGAAATCAAAGCTTGATCAGATGCCGTACTACGGAAGCAATGCTTA 653
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TCGGAAGAAGAAGAAGAAATCAAAGCTTGACCAGATGCCGTACTACGGAAGCAATGCTTA 659
Query 654 CCCCGCAGGAAAAACTGGGGGTGATCAATACTACAACCAAAATGCTGCTACACAACAACA 713
| ||||||| |||||||||||||||||||||||||||||||| | ||| | || ||||||
Sbjct 660 CGCCGCAGGCAAAACTGGGGGTGATCAATACTACAACCAAAAAGTTGC-A-AC-ACAACA 716
Query 714 ACAACATTACAACCAAAATGATCACATTGTGAATCTGCCTCCACCTCCTGGATCAATGGG 773
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AC-AC--TACAACCAAAATGATCACATTGTGAATCTGCCTCCACCTCCTGGATCAATGGG 773
Query 774 AACAAACTGGGTGAGTTCACCG-C-C-ACCACCACCTCCAGGAAATTGGCAGCCAATGCC 830
||||||||| || | ||||||| | | |||||||||| ||||||||||||||||||||||
Sbjct 774 AACAAACTGTGTAAATTCACCGCCTCAACCACCACCTGCAGGAAATTGGCAGCCAATGCC 833
Query 831 GTCGCCACCAGCACCAGTGTCAGGAGGCGCAAATGTGATCCAAAGCGGCGAAATGAGCTC 890
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 834 CTCGCCACCAGCACCAGTGTCTGGAGGCGCAAATGTGATCCATAGCGGCGAAATGAGCTC 893
Query 891 AAATTTCTCATCAGGTCCATACGCTCCATCTCTACCACCACCTCACCCTTCAGTGGCTCT 950
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 894 AAATTTCTCATCAGGTCCATACGCTCCATCTCTACCACCGCCTCACCCTTCAGTGGCTAT 953
Query 951 GGGATTCAACAATAGCACATTCACTTATGAGGAGCTAGCATCCGCAACTCAAGGTTTCTC 1010
|||||| ||||| |||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct 954 GGGATTTAACAACAGCACATTCACTTACGAGGAGCTTGCAGCCGCAACTCAAGGTTTCTC 1013
Query 1011 AAAAGACCGGTTGTTGGGACAAGGC-GGTTTCGGATATGTTCACAAAGGAATCTTGCCAA 1069
|||||| || ||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1014 AAAAGATCGCTTGTTGGGACAAGGCGGGTTT-GGATATGTTCACAAAGGAATATTGCCAA 1072
Query 1070 ATGGTAAGGAGATAGCGGTGAAGAGCCTTAAAGCGGGTAGCGGGCAAGGCGAGAGAGAGT 1129
| ||||||||||| |||||||||||||| ||||| || ||||||||||| ||||||||||
Sbjct 1073 ACGGTAAGGAGATCGCGGTGAAGAGCCTAAAAGCCGGAAGCGGGCAAGGTGAGAGAGAGT 1132
Query 1130 TCCAGGCAGAGGTGGAGATCATCAGCCGCGTTCATCATCGACATCTCGTGTCTCTTGTGG 1189
||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 1133 TCCAGGCAGAGGTTGAGATCATCAGCCGCGTTCATCATAGACATCTTGTGTCTCTTGTCG 1192
Query 1190 GATACTGCAGTAATGCGGGAGGACAGAGGTTGTTGGTCTATGAGTTTCTCCCTAATGACA 1249
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 GATACTGCAGTAATGAGGGAGGACAGAGGTTGTTGGTCTATGAGTTTCTCCCTAATGACA 1252
Query 1250 CACTTGAGTTCCACCTTCATGGGAAAAGTGGGACTGTGATGGATTGGCCAACCAGACTCA 1309
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1253 CACTTGAGTTCCACCTTCATGGGAAAAGTGGGACTGTGATGGATTGGCCAACGAGAATCA 1312
Query 1310 AGATTGCCTTAGGATCAGCAAAAGGTCTTGCTTATCTACATGAAGATTGTCATCCAAAAA 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 AGATTGCCTTAGGATCAGCAAAAGGTCTTGCTTATCTACATGAAGATTGTCATCCAAAAA 1372
Query 1370 TCATCCATAGAGACATTAAAGCTTCAAACATTCTCCTTGACCATAACTTCGAAGCCAAGG 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TCATCCATAGAGACATTAAAGCTTCAAACATTCTCCTTGACCATAACTTCGAAGCCAAGG 1432
Query 1430 TTGCAGATTTTGGTTTGGCCAAGCTCTCCCAAGACAACAATACACATGTATCGACTCGTG 1489
|||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 1433 TTGCAGATTTTGGTTTGGCCAAACTCTCTCAAGACAACTATACACATGTATCGACTCGTG 1492
Query 1490 TTATGGGAACATTCGGATACTTAGCTCCTGAATATGCATCGAGTGGGAAACTAACTGAGA 1549
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1493 TTATGGGAACATTCGGATACTTAGCTCCTGAATATGCATCAAGCGGGAAACTAACAGAGA 1552
Query 1550 AATCAGATGTTTTCTCTTTTGGAGTTATGCTTCTTGAGCTCATAACCGGACGCGGACCGG 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1553 AATCAGATGTTTTCTCTTTTGGAGTTATGCTTCTTGAGCTCATAACCGGACGCAGACCGG 1612
Query 1610 TTGATCTAAGTGGTGACATGGAAGACAGTTTAGTCGATTGGGCGAGACCATTGTGCATGA 1669
||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1613 TTGATCTTAGTGGCGACATGGAAGACAGTTTAGTTGATTGGGCGAGACCATTATGCATGA 1672
Query 1670 GGGTAGCGCAAGATGGAGAATATGGGGAATTGGTTGACCCATTCCTTGAGCACCAATACG 1729
| | ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1673 GCGCAGCTCAAGATGGAGAATATGGGGAATTGGTGGACCCATTCCTTGAGAACCAATACG 1732
Query 1730 AGCCTTATGAGATGGCACGCATGGTGGCTTGTGCTGCTGCAGCCGTAAGACATTCTGGTC 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 AGCCTTATGAGATGGCACGCATGGTGGCTTGTGCTGCTGCAGCCGTAAGACATTCTGGTC 1792
Query 1790 GTCGCCGCCCAAAGATGAGTCAGATTGTTAGGACGTTGGAGGGTGATGCCTCGCTGGATG 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 GTCGCCGCCCAAAGATGAGTCAGATTGTTAGGACGTTGGAGGGTGATGCCTCGCTGGATG 1852
Query 1850 ACTTAGACGATGGTGTGAAACCGAAACAGAGTTCAAGCGGAGGTGAAGGCAGCTCAGACT 1909
||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1853 ACTTAGACGATAGTGTAAAACCGAGACAGAGTTCAAGCGGAGGTGAAGGCAGCTCAGACT 1912
Query 1910 ATGAGATGGGCACATATGGTGCTGAGATGAGGAAGTTTCGGAAAGTGACATTGGAAAGTC 1969
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1913 ATGAGATGGGCACATATGGTGCCGAGATGAGGAAGTTTCGGAAAGTGACATTGGACAGTC 1972
Query 1970 GGGATTACGGGGCAAGTAGCGAATACGGTGCCACAAGCGAGTACGGGCTTGACCCATCCT 2029
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1973 GGGATTACGGGGCAAGTAGCGAATACGGCGCCACAAGCGAGTATGGGCTTGACCCGTCCT 2032
Query 2030 CTTCAAGCAGCGAGGAGATGCACATTGGAGGAAGCACCAGCAAAACTACTACTACTAACC 2089
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 2033 CTTCAAGCAGCGAGGAGATGCACATTGGAGGAAGCACCCGCAAAACTACTACCACTAACC 2092
Query 2090 GTGGGATTTAA 2100
|||||||||||
Sbjct 2093 GTGGGATTTAA 2103
> Ahg929770 jgi|Araly1|929770|scaffold_302227.1
Length=2131
Score = 861 bits (466), Expect = 0.0
Identities = 1083/1377 (79%), Gaps = 58/1377 (4%)
Strand=Plus/Plus
Query 702 TACACAACAACAACAACATTACAACCAAAATGATCACATTG-TGAATCTGCCTC--C-AC 757
||| ||||| || ||| | | ||||| | |||||| || |||||||| ||| | |
Sbjct 711 TAC-CAACAGCAGCAATACAATAACCAGAGCGATCAC-GTGATGAATCTGTCTCAGCAAT 768
Query 758 CTCCTGGATC-AATGGGAA-CA-AACTGGGTGAGTTCACCGCCACCACCACCTCCAGGAA 814
||||||||| || ||||| | |||||| ||| ||||||||| |||||||| |||||||
Sbjct 769 ATCCTGGATCAAACGGGAATAATAACTGGATGAATTCACCGCCTCCACCACCACCAGGAA 828
Query 815 ATTGGCAGCCAAT-GCCGTCGCCACCAGCA---CCAGTGTCAGGAGGCGCAAATGTGATC 870
||||| || | |||| | |||||| || || || ||||| || || | ||
Sbjct 829 GCTGGCAACC-CTCGCCGCCACCACCACCACCGCCTGTCTCAGGCGGTATGAACG-GA-- 884
Query 871 CAA-AGCGGCGAAATGAGCTCAAATTTCTCA-TCAGGTCCATACGCTCCATCTCTACCAC 928
|| || |||| ||||||||||| || | ||||| ||| | | ||| ||||||||||
Sbjct 885 -AACAGTAGCGACATGAGCTCAAA---CT-ACTCAGGACCACATGGTCCGTCTCTACCAC 939
Query 929 CACCTCACCCTTCAGTGGCTCTGGGATTCAACAATAGCACATTCACTTATGAGGAGCTAG 988
|||||||||||||||||||||| || |||||||| ||||||||||| || || |||||||
Sbjct 940 CACCTCACCCTTCAGTGGCTCTAGGTTTCAACAAGAGCACATTCACCTACGACGAGCTAG 999
Query 989 CATCC-GCAACTCAAGGTTTCTCAAAAGACCGG-TTGTTGGGACAAGGCGGTTTCGGATA 1046
| | | ||||||||||| ||||| ||| | | ||||| || |||||||| ||||| ||
Sbjct 1000 C-TGCTGCAACTCAAGGCTTCTCTCAAG-CAAGATTGTTAGGTCAAGGCGGGTTCGGGTA 1057
Query 1047 TGTTCACAAAGGAAT-CTTGCCAAATGGTAAGGAGATAGCGGTGAAGAGCCTTAAAGCGG 1105
||||||||| ||||| ||| |||| ||| || ||||| |||||||| || || |||||||
Sbjct 1058 TGTTCACAAGGGAATACTTCCCAA-TGGGAAAGAGATTGCGGTGAAAAGTCTAAAAGCGG 1116
Query 1106 GTAGCGGGCAAGGCGAGAGAGAGTTCCAGGCAGAGGTGGAGATCATCAGCCGCGTTCATC 1165
| ||||||||||| ||| | ||||| ||||| ||||| || || || || || |||||||
Sbjct 1117 GAAGCGGGCAAGGAGAGCGCGAGTTTCAGGCTGAGGTTGACATTATTAGTCGAGTTCATC 1176
Query 1166 ATCGACATCTCGTGTCTCTTGTGGGATACTGCAGTAATGCGGGAGGACAGAGGTTGTTGG 1225
|||| ||| ||||||||||| ||||| || | | ||| |||||||||||| ||||||
Sbjct 1177 ATCGGTTTCTTGTGTCTCTTGTTGGATATTGTA-T--TGCAGGAGGACAGAGGATGTTGG 1233
Query 1226 TCTATGAGTTTCTC-CCTAATGACACACTTGAGTTCCACCTTCATGGGAAAAGTGGGACT 1284
| |||||||| || ||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 1234 TTTATGAGTT-CTTACCTAATGACACACTTGAGTTCCATCTCCATGGTAAAAGTGGCAAG 1292
Query 1285 GTGATGGATTGGCCAACCAGACTCAAGATTGCCTTAGGATCAGCAAAAGGTCTTGCTTAT 1344
|| | || ||||| || |||||||||||||| || |||||||| ||||| ||||||||
Sbjct 1293 GTTCTTGACTGGCCTACAAGACTCAAGATTGCTTTGGGATCAGCTAAAGGACTTGCTTA- 1351
Query 1345 CT-ACATGAAGATTGTCATCCAAAAATCATCCATAGAGACATTAAAGCTTCAAACATTCT 1403
|| ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1352 CTTACATGAAGACTGTCATCCGAAAATCATTCATAGAGACATTAAAGCTTCAAACATTCT 1411
Query 1404 CCTTGACCATAAC-TTCGAAGCCAAGGTTGCAGATTTTGGTTTGGCCAAGCTCTCCCAAG 1462
||||| | | | || ||||| ||||||||||| || || || || ||||| || ||||
Sbjct 1412 TCTTGATGA-ATCCTTTGAAGCTAAGGTTGCAGACTTCGGGTTAGCGAAGCTATCTCAAG 1470
Query 1463 ACAACAATACACATGTATCGACTCGTGTTATGGGAACATTCGGATACTTAGCTCCTGAAT 1522
|||| ||||||||| || |||||| | |||||||| ||||| ||||| ||||| || |
Sbjct 1471 ACAATGTTACACATGTGTCCACTCGTATCATGGGAACTTTCGGGTACTTGGCTCCAGAGT 1530
Query 1523 ATGCATCGAGTGGGAAACTAACTGAGAAATCAGATGTTTTCTCTTTTGGAGTTATGCTTC 1582
|||| || || ||||| || || || | ||| ||||||||||| |||||||| |||||||
Sbjct 1531 ATGCGTCAAGCGGGAAGCTGACAGACAGATCCGATGTTTTCTCCTTTGGAGTGATGCTTC 1590
Query 1583 TTGAGCTCATAACCGGACGCGGACCGGTTGATCTAAGTGGTGACATGGAAGACAGTTTAG 1642
|||||||| | ||||||||| |||| |||||||| | |||||| |||||||||||||| |
Sbjct 1591 TTGAGCTCGTTACCGGACGCAGACCTGTTGATCTCACTGGTGAAATGGAAGACAGTTTGG 1650
Query 1643 TCGATTGGGCGAGACCATTGTGCATGAGGGTAGCGCAAGATGGAGAATATGGGGAATTGG 1702
|||||||||| ||||| || ||| | | | ||| || |||||||| || | ||| | |
Sbjct 1651 TCGATTGGGCAAGACCCTTATGCTTAAACGCAGCTCAGGATGGAGATTACAGTGAACTAG 1710
Query 1703 TTGACCCATTCCTTGAGCACCAATACGAGCCTTATGAGATGGCACGCATGGTGGCTTGTG 1762
|||| ||| |||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 1711 TTGATCCACGGCTTGAGAACCAATACGAGCCTCATGAGATGGCACAAATGGTGGCTTGTG 1770
Query 1763 CTGCTGCAGCCGTAAGACATTCTGGTC-GTCGCCGCCCAAAGATGAGTCAGATTGTTAGG 1821
| ||||||||| | || || || | | | ||| | || |||||||| ||||||||| ||
Sbjct 1771 CCGCTGCAGCCATCAGGCACTCAGC-CAGACGCAGGCCTAAGATGAGCCAGATTGTTCGG 1829
Query 1822 ACGT-TGGAGGGTGATGCCTCGCTGGATGA-CTTAGACGATGGTGTGAAACCGAAACAGA 1879
| | ||||||| ||||| || || || || || | |||| || | ||||||| || |
Sbjct 1830 GC-TCTGGAGGGAGATGCATCTCTAGACGATCTAA-ACGAAGGAGGGAAACCGGGGCAAA 1887
Query 1880 GTTCAAGC---GG-AGGTGAAGGCA-GCTCAGACTATGAGATGG-GCACATATGGTGCTG 1933
| ||| | || ||| || || |||| |||||||| | |||| || |||| |
Sbjct 1888 GCTCATTCCTCGGGAGGGGAT--CAAGCTCGGACTATGAC-TCAAGCACTTACAGTGCGG 1944
Query 1934 AGATGAGGAAGTTTC-GGAAAGTGACATTGGAAAGTCGGGATTACGGGGCAAGTAGCGAA 1992
| |||| |||||| | |||||||| | ||||| || | || ||||| ||||| |||||
Sbjct 1945 ATATGAAGAAGTT-CAGGAAAGTGGCCTTGGATAGCCATGAGTACGGTGCAAGCAGCGAG 2003
Query 1993 TACGGTGC-CACAAGCGAGTACGGGCTTGACCCATCCTCTTCAAGCAGCGAGGAGAT 2048
|| || | ||| ||||| |||||||||||||| || || || ||||||||||||||
Sbjct 2004 TATGG-GAACACGAGCGAATACGGGCTTGACCCGTCTTCCTCGAGCAGCGAGGAGAT 2059
> Ahg919851 jgi|Araly1|919851|scaffold_101132.1
Length=2200
Score = 191 bits (103), Expect = 2e-47
Identities = 450/611 (74%), Gaps = 49/611 (8%)
Strand=Plus/Plus
Query 1027 GGACAAGGCGGTTTCGGATATGTTCACAAAGGAAT-CTTGCCAAATGGTAAG-GAGATAG 1084
||| ||||||| ||||| | |||| |||| || || ||| | | || ||| || |||
Sbjct 1158 GGAGAAGGCGGGTTCGGGTGTGTTTACAAGGGCATCCTTTTC-GAGGGAAAGCCAG-TAG 1215
Query 1085 CGGTGAAG-AGCCTTAAAG-CGGGT-AGCG-GGCAAGGCGAGAGAGAGTTCCAGGCAGAG 1140
|| | ||| || | ||||| | ||| |||| | |||| | ||||||||| | || ||
Sbjct 1216 CGATCAAGCAG-C-TAAAGTC-GGTCAGCGCAG-AAGGATATAGAGAGTTCAAAGCTGAA 1271
Query 1141 GTGGAGATCATCAGCCGCGTTCATCATCGACATC-TCGTGTCTCTTGTGGGATACTGCAG 1199
|| |||||||| ||| | || |||||| | || | | |||||||||||||| || ||||
Sbjct 1272 GTAGAGATCATAAGCAGAGTGCATCATAGGCA-CTTGGTGTCTCTTGTGGGTTATTGCA- 1329
Query 1200 TAATGCGGGAGGACAGAGGTTGT-TGGTCTATGAGTTTCTCCCTAATGACACAC-TT-GA 1256
| | | | | ||| || || | | ||||||||||| |||| || | | || || ||
Sbjct 1330 T-CT-CTGAACAACACAGATT-TCTCATCTATGAGTTTGTCCCCAA-CA-ATACTTTGGA 1384
Query 1257 GTT-CCACCTT-CATGG-GAAAAGTGGGA-CTGTGATGGATTGGCCAACCAGACTCAAGA 1312
|| ||| || ||||| |||| | | | || |||| ||| | | ||| ||| ||
Sbjct 1385 -TTACCA-TTTGCATGGCAAAAACT--TACCGGTTTTGGAATGGACTAGAAGAGTCAGGA 1440
Query 1313 TTGCCTTAGGATCAGCAAAAGGTCTTGCTTATCTACATGAAGATTGTCATCCAAAAATCA 1372
|||| |||| |||| ||||| ||||||||||||||||||||||||||||| || || |
Sbjct 1441 TTGCAATAGGCGCAGCCAAAGGACTTGCTTATCTACATGAAGATTGTCATCCGAAGATTA 1500
Query 1373 TCCATAGAGACATTAAAGCTTCAAACATTCTCCTTG-ACCAT-AACTTCGAAGC-CAAGG 1429
||||||| ||||| ||| | ||||| ||||| ||| | || || |||||||| || ||
Sbjct 1501 TCCATAGGGACATCAAATCGTCAAATATTCTG-TTGGATGATGAA-TTCGAAGCTCA-GG 1557
Query 1430 TTGCAGATTTTGGTTTGGCCAAG-CTCTCCCAAGACAACA-A-T-ACACATGTATCGACT 1485
||||||||||||| | || ||| || | | || || | | |||||| ||| ||
Sbjct 1558 TTGCAGATTTTGGACTCGC-AAGACTGAACGAT-ACTGCACAGTCACACAT--ATCAACG 1613
Query 1486 CGTGTTATGGGAACATTCGGATACTTAGCTCCTGAATATGCATCGAGTGGGAAA-CTAAC 1544
||||| ||||| ||||| || || ||||| || |||||||| || || || ||| |||||
Sbjct 1614 CGTGTCATGGGCACATTTGGGTATTTAGCACCAGAATATGCGTCAAGCGG-AAAGCTAAC 1672
Query 1545 TGAGAAATCAGATGT-TTTCTCTTTTGGAGTTATGCTTCTTGAGCTCATAACCGGACGCG 1603
|| | ||||||||| ||| || ||||||||| ||||||| || ||||| || || |||
Sbjct 1673 GGATAGATCAGATGTGTTT-TCATTTGGAGTTGTGCTTCTCGAACTCATCACTGGTCGCA 1731
Query 1604 GACCGGTTGAT 1614
||| ||||||
Sbjct 1732 AACCTGTTGAT 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78999168130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5