BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49290.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923288 jgi|Araly1|923288|scaffold_104569.1 1232 0.0
> Ahg923288 jgi|Araly1|923288|scaffold_104569.1
Length=1044
Score = 1232 bits (667), Expect = 0.0
Identities = 910/1024 (89%), Gaps = 29/1024 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCCTTTGTATCCGTCTGTCTTAAACAATCCTTTATCTTCAATTGTGGTGACA 60
|||||||||||||||||| | | ||| | |||||||||| |||||||||||||||||||
Sbjct 23 ATGGCTTCTCCTTTGTAT-C--C-GTC-T-AACAATCCTTCATCTTCAATTGTGGTGACA 76
Query 61 CGAGACGAGTTCAATGCTTTTCACACAATCGACAGAACCTTGTTCAGTCGTCTTGTCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 CGAGACGAGTTCAATGCTTTTCACACAATCGACAGAACCTTGTTCAGTCGTCTTGTCTTC 136
Query 121 AATCTAAACCGAGACGTTGACCAGTCGTTTCTAGCCATGTGTTTTCTCTTGTTCCTCGAG 180
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 137 CATCTAAACCGAGACGTGGACCAGTCGTTTCTAGCGATGTGTTTTCTCTTGTTGCTCGAG 196
Query 181 CAATCCAGTTATGCCCGCGACATAATCGCGTACCTTGTCTCGTTACCAAACGCTTTTGTC 240
||||| |||| ||||| ||| | ||||| || ||||||||||| ||| ||||||| ||
Sbjct 197 CAATCTGGTTACGCCCGTGACGTTATCGCCTATCTTGTCTCGTTGCCAGACGCTTTCGTT 256
Query 241 GACGCGGTGGCTAACGAAATCGGTGTGTGTATAAATTTGTTATACAACGTAGAGTTT-GC 299
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 257 GACGCGGTGGCTAACGAGATCGGTGTGTGTATAAATTTGTTATACAACCTAGA-TTTCGC 315
Query 300 ATCAACGTTCTTCGCTGCT-GACAACGATGATAACTCCATGATACCATTGCTCTTACGTA 358
||| ||||||||||||||| | ||| |||||||| ||||| ||||| ||||||||| |||
Sbjct 316 ATCTACGTTCTTCGCTGCTAG-CAATGATGATAATTCCATTATACCTTTGCTCTTAAGTA 374
Query 359 TTACTGGAGGAAAGTTTACTCTCAGATTGATCAACCAACAACGCAAAAACTTTT-GCGCT 417
| |||||||| ||||| ||||||||||| ||||| ||| | ||| ||| |||| | | |
Sbjct 375 TGACTGGAGGGAAGTTAACTCTCAGATTAATCAATCAAGACCGCGAAAT-TTTTCGTGTT 433
Query 418 GGAGTGACAAAGAGTTGGACCGATGTTTGCACTCGAGCATTCTCAGATTTATGCGAGACA 477
|||||| |||||| ||||||||||||| |||||||||| ||| ||||||||||||||| |
Sbjct 434 GGAGTGTCAAAGAATTGGACCGATGTTGGCACTCGAGCTTTCACAGATTTATGCGAGAGA 493
Query 478 GCTCATAGGATCAACAGGGAGAAACAAT-TGGCTTTAGAGAGAGAGAAATTCATAGAGGA 536
||||| | ||||||||||||||||| | |||||||||||||||||||||| || |||||
Sbjct 494 GCTCACATGATCAACAGGGAGAAACT-TCTGGCTTTAGAGAGAGAGAAATTTATTGAGGA 552
Query 537 TATGAAGAAACTCAGGTTGAGTCTCCAACAAGAAAAATCTAATAGGTTAAGTGTACAACA 596
||||||| |||||||||||||| ||||||||||| |||| ||||| ||||| |||||
Sbjct 553 CATGAAGAGGCTCAGGTTGAGTCTTCAACAAGAAAACCCTAACAGGTTGAGTGTTCAACA 612
Query 597 AGTAAAAATTGCTTctcctcctcctcctcgtcctcatcctccAGTTGAAGACGAAACAGA 656
|||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 613 AGTAAAAATTGCGTCTCCTCCTCCTCCTCGTCCG---------GTTGAAGACGAAACA-A 662
Query 657 A-AAGGCCCTTAGAGAGAAAGAGACAATGGAGGTAAAAGAGAAGGAAG-GTGTGCTGGCG 714
| ||| || || ||||||||||| |||||||| |||||||||||||| | ||| |||||
Sbjct 663 ACAAGTTCCATAAAGAGAAAGAGATAATGGAGGCAAAAGAGAAGGAAGCG-GTGGTGGCG 721
Query 715 GCAGATGATCGGACGGTTTTCCTGACGTTTTCAAAAGGGTATCCGATCTCGGAAGCGGAA 774
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 722 GCAGATGATCGGACGGTTTTCCTGACGTTTTCGAAAGGGTACCCGATTTCGGAAGCGGAA 781
Query 775 GTAAGGGTTTACTTCACTAGGAGATTCGGGGAAGTGATAGAAGCGGTAGAGATGCAAGAA 834
|| ||||||||||| || ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 782 GTTAGGGTTTACTTTACGAGGAGGTTTGGGGAAGTGATAGAAGCGGTAGAGATGCAGGAA 841
Query 835 GTTGAAGCAAACGAGCAGCCATTGTTTGCGAAGATGGTGATGAAACTGCAGTGTGCGTCG 894
||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct 842 GTTGAAGCAAATGAGCAGCCGTTGTTTGCGAAGATGGTGTTGAAACTTAAGTGTGCGTCG 901
Query 895 ATGATGGATGAGATTGTGAGTGCGAGGTTTAGAAACAAGTTCACCATCGATGGCAAACAT 954
|||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 902 ATGATGGACCAGATTGTGAGTGCAAGGTCTAGAAACAAGTTCACCATCGATGGCAAACAT 961
Query 955 GTTTGGGCTCGTAAGTACGTTCGCAAGAATCC-TTATCCAGCTTCATCCTCTACTCATTT 1013
|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |
Sbjct 962 GTTTGGGCTCGTAAGTACGTTCGCAAGA-TCCCTTACCCAGCTTCATCCTCTACTCATAT 1020
Query 1014 TTGA 1017
||||
Sbjct 1021 TTGA 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5