BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49300.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929771 jgi|Araly1|929771|scaffold_302228.1 667 0.0
Ahg923290 jgi|Araly1|923290|scaffold_104571.1 403 1e-111
Ahg474344 jgi|Araly1|474344|fgenesh2_kg.1__4298__AT1G52280.1 351 4e-96
> Ahg929771 jgi|Araly1|929771|scaffold_302228.1
Length=661
Score = 667 bits (361), Expect = 0.0
Identities = 539/627 (86%), Gaps = 4/627 (1%)
Strand=Plus/Plus
Query 113 GATTCGATGCCTTCTCGTAGAAGAACTCTCCTCAAAGTCATCATCCTCGGTGATAGCGGG 172
||||||||||| || |||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 15 GATTCGATGCCGTCCCGTAGACGCACTCTCCTGAAAGTCATCATCCTCGGTGATAGCGGG 74
Query 173 GTTGGG-AAGACTTCTTTAATGAATCAATATGTTAATAAGAAGTTCAGCAACCAGTATAA 231
| |||| || || ||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 75 G-TGGGAAAAACCTCTTTGATGAATCAATATGTTAATAAAAAGTTCAGCAACCAGTACAA 133
Query 232 GGCAACTATTGGGGCTGATTTCTTGACTAAGGAAGTTCAATTTGAAGACCGGCTTTTCAC 291
|||||| ||||| ||||| |||||||| ||||||||||| |||||||| || ||||||||
Sbjct 134 GGCAACCATTGGAGCTGACTTCTTGACCAAGGAAGTTCAGTTTGAAGATCGACTTTTCAC 193
Query 292 TTTACAGATCTGGGACACAGCTGGTCAAGAAAGGTTTCAGAGTCTTGGTGTTGCGTTTTA 351
||||||||||||||| |||||||| || |||||||||||||| |||||||| || |||||
Sbjct 194 TTTACAGATCTGGGATACAGCTGGACAGGAAAGGTTTCAGAGCCTTGGTGTAGCTTTTTA 253
Query 352 TCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAACTCCGCAAAATCATTCGAGGA 411
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 254 CCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTCAACTCCATGAAGTCATTTGAAAA 313
Query 412 TCTCAACAACTGGAGGGAAGAGTTTCTGATCCAGGCAAGTCCTTCGGATCCAGAGAACTT 471
||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||| ||
Sbjct 314 TCTGAACAACTGGAGGGAAGAATTTCTGATCCAGGCGAGTCCATCAGATCCAGAGAATTT 373
Query 472 TCCCTTTGTTGTTATCGGTAATAAGATCGATGTGGATGGTGGAAGCAGCCGGGTGGTATC 531
||| |||||| ||||||| || ||| | || ||||||||||||| |||| | ||||| ||
Sbjct 374 TCCATTTGTTCTTATCGGGAACAAGGTTGACGTGGATGGTGGAAACAGCAGAGTGGTTTC 433
Query 532 AGAGAAGAAGGCTCGAGCTTGGTGTGCTTCGAAAGGA-AACATTCCATACTATGAAACCT 590
|||||| |||||| ||||||||||||||| ||||| |||||||| |||| ||| ||||
Sbjct 434 AGAGAAAAAGGCTAAAGCTTGGTGTGCTTC-AAAGGGGAACATTCCTTACTTTGAGACCT 492
Query 591 CAGCTAAAGTAGGCACCAATGTAGAAGACGCGTTCCTGTGCATAACTACGAACGCAATGA 650
| || |||| ||| || ||||| || || || |||| ||||| | | ||||||| |||
Sbjct 493 CTGCCAAAGAAGGTACTAATGTGGAGGAAGCTTTCCAATGCATTGCCAAGAACGCATTGA 552
Query 651 AGAGTGGAGAAGAGGAAGAAATGTACCTACCAGACACGATCGATGTCGGAACCAGCAATC 710
|||| |||||||| ||||| | ||| | |||||||| ||||||||||| || |||||||
Sbjct 553 AGAGCGGAGAAGAAGAAGAGTTATACTTGCCAGACACAATCGATGTCGGGACGAGCAATC 612
Query 711 CACAGAGGTCAACAGGATGTGAATGCT 737
||||||||| ||||| ||||||||||
Sbjct 613 AACAGAGGTCCACAGGGTGTGAATGCT 639
> Ahg923290 jgi|Araly1|923290|scaffold_104571.1
Length=349
Score = 403 bits (218), Expect = 1e-111
Identities = 238/248 (96%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 199 ATATGTTAATAAGAAGTTCAGCAACCAGTATAAGGCAACTATTGGGGCTGATTTCTTGAC 258
|||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 74 ATATGTGAATAAGAAGTTTAGCAACCAGTATAAGGCGACCATTGGGGCTGATTTCTTGAC 133
Query 259 TAAGGAAGTTCAATTTGAAGACCGGCTTTTCACTTTACAGATCTGGGACACAGCTGGTCA 318
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TAAGGAAGTGCAATTTGAAGACCGGCTTTTCACTTTACAGATCTGGGACACAGCTGGTCA 193
Query 319 AGAAAGGTTTCAGAGTCTTGGTGTTGCGTTTTATCGTGGTGCTGATTGCTGTGTTCTTGT 378
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 194 GGAAAGGTTTCAGAGTCTTGGTGTGGCATTTTATCGTGGTGCTGATTGCTGTGTTCTTGT 253
Query 379 ATATGATGTCAACTCCGCAAAATCATTCGAGGATCTCAACAACTGGAGGGAAGAGTTTCT 438
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 254 ATATGATGTCAACTCCGCAAAGTCATTTGAGGATCTCAACAACTGGAGGGAAGAGTTTCT 313
Query 439 GATCCAGG 446
||||||||
Sbjct 314 GATCCAGG 321
Score = 99.0 bits (53), Expect = 6e-20
Identities = 58/60 (97%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 113 GAT-TCGATGCCTTCTCGTAGAAGAACTCTCCTCAAAGTCATCATCCTCGGTGATAGCGG 171
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 14 GATCTCGATGCCTTCTCGTAGAAGAACTCTCCTCAAAGTCATCATCCTCGGCGATAGCGG 73
> Ahg474344 jgi|Araly1|474344|fgenesh2_kg.1__4298__AT1G52280.1
Length=796
Score = 351 bits (190), Expect = 4e-96
Identities = 490/633 (77%), Gaps = 28/633 (4%)
Strand=Plus/Plus
Query 119 ATGCCTTCTCGTAGAAGAACTCTCCTCAAAGTCATCATCCTCGGTGATAGCGGGGTTGGG 178
||| ||||||| | ||| ||| ||||| || ||||| |||||||||||||||||||||
Sbjct 94 ATGTCTTCTCGCCGGAGAGTTCTTCTCAAGGTTATCATTCTCGGTGATAGCGGGGTTGGG 153
Query 179 AAGACTTCTTTAATGAATCAATATGTTAATAAGAA-GTTCAGCAACCAGTATAAGGCAAC 237
|||||||| || |||||||| | ||| ||| ||| ||| || || |||||||| || ||
Sbjct 154 AAGACTTCGTTGATGAATCAGTTTGTGAATC-GAAAGTTTAGTAATCAGTATAAAGCGAC 212
Query 238 TATTGGGGCTGATTTCTTGACTAAGGAAGTTCAATTTGAAGACCGGCTTTTCACTTTACA 297
||||| || ||||| |||||||| || |||||| |||| ||| | | |||||||||||
Sbjct 213 GATTGGAGCAGATTTTTTGACTAAAGAGGTTCAAATTGATGACAGAATCTTCACTTTACA 272
Query 298 GATCTGGGACACAGCTGGTCAAGAAAGGTTTCAGAGTCTTGGT-GTTGCGTTTTATCGTG 356
||| ||||| || ||||| |||||||| ||||| ||| |||| || |||||||| || |
Sbjct 273 GATTTGGGATACTGCTGGGCAAGAAAGATTTCAAAGT-TTGGGAGTCGCGTTTTACCGAG 331
Query 357 GTGCTGATTGCTGTGTTCTTGTATATGATGTCAAC-TCC-GCAAAATCATTCGAGGATCT 414
| || ||||| ||||||||||| ||||||||||| | | ||| || || || ||||
Sbjct 332 GAGCGGATTGTTGTGTTCTTGTGTATGATGTCAATGTTATG-AAA-TCTTTTGATAATCT 389
Query 415 CAACAACTGGAGGGAAGAGTTTCT-GATCCAGGCAAGTCCTTCGGATCCAGAGAACTTTC 473
|| ||||||||||||||||| || ||| ||||| ||||| |||||||| || |||||||
Sbjct 390 TAATAACTGGAGGGAAGAGTT-CTTGATTCAGGCTAGTCCATCGGATCCTGAAAACTTTC 448
Query 474 CCTTTGTTGT-TATCGGTAATAAGATCGATGTGGATGGTGG-AAGCAGCCGGGTGGTATC 531
| ||||| || | | || || || | |||||| || ||||| ||| ||||| ||||| ||
Sbjct 449 CGTTTGTCGTGT-TGGGGAACAAAACCGATGTTGACGGTGGCAAG-AGCCGAGTGGTTTC 506
Query 532 AGAGAAGAAGGCTCGAG-CTTGGTGTGCTTCGAAAGGAAACATTCCATACTATGAAACCT 590
||||| ||||| || | |||||||| || |||||||||||||| |||| ||| || |
Sbjct 507 TGAGAAAAAGGCAA-AGGCATGGTGTGCATCTAAAGGAAACATTCCTTACTTTGAGACTT 565
Query 591 CAGCTAAAGTAGGCAC-CAATGTAGAAGACG-CGTTCCTGTGCATAACTACGAACGCAAT 648
| || |||| ||| | ||||||||| | || | ||| |||||||| | || ||| |
Sbjct 566 CCGCCAAAGAAGG-ATTCAATGTAGATG-CGGCTTTCGAATGCATAACCAAAAATGCATT 623
Query 649 GAAGAGTGGAGAAGAGGAAGAAATGTACCTACCAGACACGATCGATGT--C-GGAAC-CA 704
|||| || | || || ||| |||||| || ||||| || ||||| | ||| ||
Sbjct 624 CAAGAATGAACCTGAAGAGGAACCGTACCTTCCCGACACCATTGATGTTGCCGGAGGTCA 683
Query 705 GCAATCCACAGAGGTCAACAGGATGTGAATGCT 737
|||| | | ||| |||||||| ||||||||||
Sbjct 684 GCAA-CAA-AGA--TCAACAGGGTGTGAATGCT 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5