BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49320.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474072 jgi|Araly1|474072|fgenesh2_kg.1__4026__AT1G49320.1 1539 0.0
> Ahg474072 jgi|Araly1|474072|fgenesh2_kg.1__4026__AT1G49320.1
Length=1071
Score = 1539 bits (833), Expect = 0.0
Identities = 1021/1104 (92%), Gaps = 43/1104 (4%)
Strand=Plus/Plus
Query 1 ATTGAGATCTAAGATCACTTGAACACTTATAAAAAATATTTTGCTCTTCTTTCTATATAT 60
|||||||||||||||||||| ||| |||||||||| |||||| |||| | | | |
Sbjct 1 ATTGAGATCTAAGATCACTT------TTA-AAAAAATATTCTGCTCTCCTTT-T-T-T-T 49
Query 61 TTATATAAAAAGTCAAAATATCaagaagaggaagaagaagaagaaACTCATTTTCTCCGC 120
|| | |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 50 ATAAACAAAAAGTCAAAATATCAAGAAGAGGAAGAAGAAGAAGAAACTCA--TT-T---- 102
Query 121 AGAGAAAATACAATCCATGGCTTCTACTTTTAGGCTCTCTATTAGCTTCCTCACTCTCAT 180
| | | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 103 --------T-C--T--ATGGCTTCTACTTTTAGGCTCTCTATTAGCTTCCTCACTCTCCT 149
Query 181 CCTCTTCTCTCTGTGGGTAGTGGAGGCACACACGTCTAGAAAGTTGATATCAATCAAGGA 240
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 150 CCTCTTCTCTCTGTGGGTAGTGGAGGCACACACGTCAAGAAAGCTGATATCAATCAAGGA 209
Query 241 AAAAGAAGGTCAAGATATTAGTCATTTGCTCAAAGATGGTGAATTTGATGACCCTTCGTT 300
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 210 AAACGAAGGTCAAGATATTAGTCATTTGCTCAAAGATGGTGAATTCGATGATCCTTCATT 269
Query 301 GTACATGTATTTCACACTCAATGATCTCAAACTAGGAACCAAATTGCTGATTTACTTCTA 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GTACATGTATTTCACACCCAATGATCTCAAACTAGGAACCAAATTGCTGATTTACTTCTA 329
Query 361 CAAAAACGATCTTCAAAAGCTTCCTCCACTTCTCACAAGACAACAAGCCGATCTCATTCC 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 330 CAAAAACGATCTTCAAAAGCTTCCTCCACTTCTCACAAGACAACAAGCTGATCTCATTCC 389
Query 421 TTTCACTAAGTCAAAGCTTGACTTCCTTCTCGACCACTTCTCTATCACCAAAGACTCTCC 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 390 TTTCACTAAGTCAAAGCTTGACTTCCTTCTCGACCACTTCTCGATCACCAAAGACTCTCC 449
Query 481 TCAAGGGAAAGCCATAAAGGAGACTTTGGGACATTGTGATGCTAAAGCTATTGAAGGAGA 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 450 TCAAGGGAAAGCCATAAAGGAGACTCTGGGACATTGTGATGCTAAAGCTATTGAAGGAGA 509
Query 541 GCATAAGTTTTGTGGAACTTCTTTGGAGTCATTGATCGATCTTGTGAAGAAAACAATGGG 600
|||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 510 GCATAAGTTTTGCGGGACTTCTTTGGAGTCTTTGATCGATCTCGTGAAGAAAACAATGGG 569
Query 601 GTATAATGTTGACCTCAAGGTCATGACGACTAAAGTAATGGTACCGGCCCAAAATTCGAT 660
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| ||
Sbjct 570 GTATAATGTTGACCTCAAGGTCATGACAACTAGAGTAATGGCACCGGCCCAAAATTCTAT 629
Query 661 AAGCTACGCTTTGCATAACTACACATTCGTCGAGGCTCCAAAGGAACTTGTTGGGATTAA 720
||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||
Sbjct 630 AAGCTACGCTTTGCATAACTATACATTCGTCGAGGCTCCTAAGGAACTTGTCGGTATTAA 689
Query 721 GATGTTGGGATGTCACAGAATGCCT-TACCCTTATGCTGTTTACTATTGCCATGGACATA 779
|||||||||||| || |||||| || |||||||||||||||||||||||||| |||||||
Sbjct 690 GATGTTGGGATGCCATAGAATG-CTATACCCTTATGCTGTTTACTATTGCCACGGACATA 748
Query 780 AAGGTGGAAGTAGAGTCTTTGAAGTTAATTTGGTGACGGATGATGGGAGACAACGGGTAG 839
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 749 AAGGTGGAAGCAGAGTCTTTGAAGTTAATCTGGTGACGGATGATGGGAGACAACGGGTTG 808
Query 840 TAGGACCCGCTGTCTGCCACATGGACACATCCACGTGGGACGCGGATCATGTAGCTTTTA 899
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 809 TAGGACCCGCTGTCTGCCACATGGACACGTCCACGTGGGATGCGGATCATGTAGCTTTTA 868
Query 900 AGGTGTTGAAGATGGAGCCGAGGTCAGCACCGGTTTGCCATTTCTTCCCTCTTGATAACA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AGGTGTTGAAGATGGAGCCGAGGTCAGCACCGGTTTGCCATTTCTTCCCTCTTGATAACA 928
Query 960 TTGTGTGGGTAACAAAGTAAGAAAATAGACGTAGCTCTATATAATGTGAGTATGTGTTTG 1019
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 929 TTGTGTGGGTAACAAAGTAAGAAAATAGACTTAGCTCTATATAATGTGAGTATGTGTT-G 987
Query 1020 TAATAACTATGGTTTgaaagg-aaaaa----g-aaaagaaaagaaaa-a--gaCAGCCTT 1070
|||||||||||||||||||| ||||| | |||| |||| |||| | |||||||||
Sbjct 988 TAATAACTATGGTTTGAAAGATAAAAAAAAAGGAAAAAAAAAAAAAAGAAAGACAGCCTT 1047
Query 1071 AATGTTGGCTTTGGTATTGCCTCT 1094
||||||||||||||||||||||||
Sbjct 1048 AATGTTGGCTTTGGTATTGCCTCT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5