BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49330.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913994 jgi|Araly1|913994|Al_scaffold_0001_4248 996 0.0
> Ahg913994 jgi|Araly1|913994|Al_scaffold_0001_4248
Length=885
Score = 996 bits (539), Expect = 0.0
Identities = 724/813 (89%), Gaps = 13/813 (2%)
Strand=Plus/Plus
Query 175 ATCCGTCCTG-TGAAGTCACCGGTTCCTATAGCTCCACCACCGGAATTCCCTGGACCTGT 233
|||||||| | || ||||||||||| || ||||||||||||||| ||| |||||||| |
Sbjct 55 ATCCGTCC-GAAGACGTCACCGGTTCGTAAAGCTCCACCACCGGAGTTCGCTGGACCTAT 113
Query 234 GACAACGTGGCCAACACCTGCTGATTT-TCTGGCGACGCGGTCTATGGTGCCTGATCCCC 292
||||||||||||||||||||||||||| | ||||| |||| |||||| |||| |||||
Sbjct 114 GACAACGTGGCCAACACCTGCTGATTTAT-TGGCGGCGCGTTCTATGCCGCCTTATCCCA 172
Query 293 CTCCGCCGTCTCATCAGATACCTTTATGGATGAGCAACTAT--T-TTCAACAGACACCGA 349
|||||||| | |||| |||||| | ||||||||| ||||| | ||| ||||||||||
Sbjct 173 CTCCGCCGCCGCATCTGATACCGTCATGGATGAGTGACTATCCTCATCACCAGACACCGA 232
Query 350 ATCCGCCTCAGCTGGTTACTCATTTCTTCCCGCCGTCAGGTTTAGCTCC-ACCTTCGTCA 408
|||||||||||||| ||||| ||||||||||||||||| |||| ||||| | || |||||
Sbjct 233 ATCCGCCTCAGCTGTTTACTAATTTCTTCCCGCCGTCAAGTTTCGCTCCTA-CTCCGTCA 291
Query 409 AATCTAACTCCTCCGCCGGTGAAGAGACCAGTAACCGGTTCCGTTCGTATTTATAGATCA 468
||||||||| ||||||||| || ||||||||||||| |||||||||| ||| ||||||
Sbjct 292 AATCTAACTACTCCGCCGGCGATCAGACCAGTAACCGCTTCCGTTCGTGGTTACAGATCA 351
Query 469 CGATCAACCGTAAGTAAGAAATCCGATACGATTTCTCCGCCGTTTCCATGGGCGACTAAT 528
| ||| |||| || | ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 352 CAATCCACCGCAAATCAGAAATCCGGTACGATTTCTCCGCCGTTTCCTTGGGCGACTAAT 411
Query 529 CGCCGTGGGGAGATACAAAGCCTTGAGTATCTCGAATCGAATCAGATCACAACCATCACC 588
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 412 TACCGTGGGCAGATACAAAGCCTTGAGTATCTCGAATCGAAACAGATCACAACCATCACC 471
Query 589 GGAGAGGTACAATGTCGACACTGCGAGAAAGTGTATCAGGTTAGCTACAATCTAAGGGAG 648
||||||||||||||||||||||||||||| || |||| ||| ||||||||||||| ||||
Sbjct 472 GGAGAGGTACAATGTCGACACTGCGAGAATGTTTATCCGGTAAGCTACAATCTAAAGGAG 531
Query 649 AGATTCGCTGAGGTTGTGAAG-TTTTATTTGACGGAGAAGAGGAAAATGAGGGACAGAGC 707
|||||||| ||||||| |||| |||| || | | |||||||| ||||||||| |||||
Sbjct 532 AGATTCGCGGAGGTTGAGAAGATTTTCTTAAATAG-GAAGAGGATAATGAGGGAAAGAGC 590
Query 708 TCATAAGGATTGGGC-GTATCCAGAGCAACGGAGATGTGAGCTTTGTGGCCGTGAAAAAG 766
|| | |||| ||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 591 TCCT-TCGATTTGGCTGAATCCAGAACAACGGAGATGTGAGCTTTGTGGCCGTGAAAAAG 649
Query 767 CTGTGAAACCGGTGATTGCTGAACGGAAAAGTCAGATTAATTGGTTGTTTTTGCTTTTGG 826
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CTGTGAAACCTGTGATTGCTGAACGGAAAAGTCAGATTAATTGGTTGTTTTTGCTTTTGG 709
Query 827 GACAAACGTTGGGTTTTTGTACATTGGAGCAGCTTAAGAATTTCTGCAAACATTCCAAGA 886
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 710 GACAAACGTTGGGTTTTTGTACATTGGAACAGCTCAAGAATTTCTGCAAACATTCAAAGA 769
Query 887 ATCATCGTACTGGTGCTAAGGATCGTGTTCTTTACTTGACGTATATGGGTCTCTGCAAGA 946
|||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 770 GTCATCGTACTGGCGCTAAAGATCGTGTTCTTTACTTGACGTATTTGGGTCTCTGCAAGA 829
Query 947 TGCTTCAGCCTAAATCTGACCTCTTTACCTGTG 979
||||||||||||||| ||||||||||||| |||
Sbjct 830 TGCTTCAGCCTAAATGTGACCTCTTTACCCGTG 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5