BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49330.1 Length=996 Score E Sequences producing significant alignments: (Bits) Value Ahg913994 jgi|Araly1|913994|Al_scaffold_0001_4248 996 0.0 > Ahg913994 jgi|Araly1|913994|Al_scaffold_0001_4248 Length=885 Score = 996 bits (539), Expect = 0.0 Identities = 724/813 (89%), Gaps = 13/813 (2%) Strand=Plus/Plus Query 175 ATCCGTCCTG-TGAAGTCACCGGTTCCTATAGCTCCACCACCGGAATTCCCTGGACCTGT 233 |||||||| | || ||||||||||| || ||||||||||||||| ||| |||||||| | Sbjct 55 ATCCGTCC-GAAGACGTCACCGGTTCGTAAAGCTCCACCACCGGAGTTCGCTGGACCTAT 113 Query 234 GACAACGTGGCCAACACCTGCTGATTT-TCTGGCGACGCGGTCTATGGTGCCTGATCCCC 292 ||||||||||||||||||||||||||| | ||||| |||| |||||| |||| ||||| Sbjct 114 GACAACGTGGCCAACACCTGCTGATTTAT-TGGCGGCGCGTTCTATGCCGCCTTATCCCA 172 Query 293 CTCCGCCGTCTCATCAGATACCTTTATGGATGAGCAACTAT--T-TTCAACAGACACCGA 349 |||||||| | |||| |||||| | ||||||||| ||||| | ||| |||||||||| Sbjct 173 CTCCGCCGCCGCATCTGATACCGTCATGGATGAGTGACTATCCTCATCACCAGACACCGA 232 Query 350 ATCCGCCTCAGCTGGTTACTCATTTCTTCCCGCCGTCAGGTTTAGCTCC-ACCTTCGTCA 408 |||||||||||||| ||||| ||||||||||||||||| |||| ||||| | || ||||| Sbjct 233 ATCCGCCTCAGCTGTTTACTAATTTCTTCCCGCCGTCAAGTTTCGCTCCTA-CTCCGTCA 291 Query 409 AATCTAACTCCTCCGCCGGTGAAGAGACCAGTAACCGGTTCCGTTCGTATTTATAGATCA 468 ||||||||| ||||||||| || ||||||||||||| |||||||||| ||| |||||| Sbjct 292 AATCTAACTACTCCGCCGGCGATCAGACCAGTAACCGCTTCCGTTCGTGGTTACAGATCA 351 Query 469 CGATCAACCGTAAGTAAGAAATCCGATACGATTTCTCCGCCGTTTCCATGGGCGACTAAT 528 | ||| |||| || | ||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 352 CAATCCACCGCAAATCAGAAATCCGGTACGATTTCTCCGCCGTTTCCTTGGGCGACTAAT 411 Query 529 CGCCGTGGGGAGATACAAAGCCTTGAGTATCTCGAATCGAATCAGATCACAACCATCACC 588 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 412 TACCGTGGGCAGATACAAAGCCTTGAGTATCTCGAATCGAAACAGATCACAACCATCACC 471 Query 589 GGAGAGGTACAATGTCGACACTGCGAGAAAGTGTATCAGGTTAGCTACAATCTAAGGGAG 648 ||||||||||||||||||||||||||||| || |||| ||| ||||||||||||| |||| Sbjct 472 GGAGAGGTACAATGTCGACACTGCGAGAATGTTTATCCGGTAAGCTACAATCTAAAGGAG 531 Query 649 AGATTCGCTGAGGTTGTGAAG-TTTTATTTGACGGAGAAGAGGAAAATGAGGGACAGAGC 707 |||||||| ||||||| |||| |||| || | | |||||||| ||||||||| ||||| Sbjct 532 AGATTCGCGGAGGTTGAGAAGATTTTCTTAAATAG-GAAGAGGATAATGAGGGAAAGAGC 590 Query 708 TCATAAGGATTGGGC-GTATCCAGAGCAACGGAGATGTGAGCTTTGTGGCCGTGAAAAAG 766 || | |||| ||| | ||||||| |||||||||||||||||||||||||||||||||| Sbjct 591 TCCT-TCGATTTGGCTGAATCCAGAACAACGGAGATGTGAGCTTTGTGGCCGTGAAAAAG 649 Query 767 CTGTGAAACCGGTGATTGCTGAACGGAAAAGTCAGATTAATTGGTTGTTTTTGCTTTTGG 826 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 CTGTGAAACCTGTGATTGCTGAACGGAAAAGTCAGATTAATTGGTTGTTTTTGCTTTTGG 709 Query 827 GACAAACGTTGGGTTTTTGTACATTGGAGCAGCTTAAGAATTTCTGCAAACATTCCAAGA 886 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct 710 GACAAACGTTGGGTTTTTGTACATTGGAACAGCTCAAGAATTTCTGCAAACATTCAAAGA 769 Query 887 ATCATCGTACTGGTGCTAAGGATCGTGTTCTTTACTTGACGTATATGGGTCTCTGCAAGA 946 |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 770 GTCATCGTACTGGCGCTAAAGATCGTGTTCTTTACTTGACGTATTTGGGTCTCTGCAAGA 829 Query 947 TGCTTCAGCCTAAATCTGACCTCTTTACCTGTG 979 ||||||||||||||| ||||||||||||| ||| Sbjct 830 TGCTTCAGCCTAAATGTGACCTCTTTACCCGTG 862 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37017352407 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5