BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49350.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474075 jgi|Araly1|474075|fgenesh2_kg.1__4029__AT1G49350.1 1744 0.0
Ahg914012 jgi|Araly1|914012|Al_scaffold_0001_4266 1147 0.0
> Ahg474075 jgi|Araly1|474075|fgenesh2_kg.1__4029__AT1G49350.1
Length=1212
Score = 1744 bits (944), Expect = 0.0
Identities = 1129/1218 (93%), Gaps = 13/1218 (1%)
Strand=Plus/Plus
Query 27 ACAGATCTATCAGTTTACTGACTACAGAGAGGATTTGAACTGAGAATCGAAGAAAGTCT- 85
||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||
Sbjct 1 ACAGATCTATCAGTTTAGTGACTACAGTGAGGATTTAAACTGAGAAACGAAGAAAGTCTG 60
Query 86 CTGA-GGGTTCATCTATGGAACCGGTTATAATCGGTGCGCTGATTTTGGATGTTCACGCC 144
| || ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 C-GAGGGGTTCATCAATGGAACCGGTGATAATCGGTGCGCTGATTTTGGATGTTCACGCC 119
Query 145 AAGCCTTCG-ACCACACCAATCTCAGGAACCACTGTCCCTGGCCAGGTCTTATTTGCGCC 203
||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 AAGCCTT-GTACCGCACCAATCTCAGGAACCACTGTCCCTGGCCAGGTCTTGTTTGCGCC 178
Query 204 GGGTGGTGTAGCAAGAAATGTAGCTGATTGCATCTTCAAGCTTGGAATTACACCTTTTAT 263
|||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||
Sbjct 179 CGGTGGTGTAGCAAGAAATGTAGCTGAGTGCATCTTCAAGCTTGGTATTAAACCTTTCAT 238
Query 264 GATTGGTACTTTAGGG-CTTGATGGTCCAGCCAATGTTTTATTGAAAGAGTGGAAGCTCT 322
|||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 239 GATTGGTACTTT-GGGCCTTGATGGTCCAGCCAATGTATTATTGAAGGAGTGGAAGCTCT 297
Query 323 CTATGAAAGGAATCTTGAGACGTGAAGACATTAGTACTCCCATTGTGTCCCTTGTATATG 382
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCATGACAGGAATCTTGAGACGTGAAGACATTAGTACTCCCATTGTGTCCCTTGTATATG 357
Query 383 ACACTAATGGAGAAGTTGCCGCTGGTGTTGCTGGCGTGGATGCCGTTGAAAATTTTTTAA 442
||| ||||||||||||||| || ||||||||||| || ||||| |||||||| ||| | |
Sbjct 358 ACATTAATGGAGAAGTTGCGGCCGGTGTTGCTGGTGTTGATGCAGTTGAAAAGTTTCTGA 417
Query 443 CACCTGAGTGGATCCAGCGGTTTGAATACAACATAAGCTCTGCTCGTCTTCTTATGGTAG 502
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 418 CACCTGAGTGGATCCAGCGGTTTGAATACAACATAAGCTCTGCTCCTCTTCTTATGGTAG 477
Query 503 ATGCAAATCTTAGCTCTCTTGCTTTGGAAGCATCTTGCAAATTGGCTGCAGAGTCCAGTG 562
|||||||||||||| |||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 478 ATGCAAATCTTAGCACTCTTGCTTTGGAAGCTTCTTGCAAATTGGCTGCAGAGTTCAATG 537
Query 563 TTCCTGTATGGTTTGAGCCAGTGTCAGTCACTAAGTCACAGAGGATCGCCTCAATTGCCA 622
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 538 TTCCTGTATGGTTTGAGCCCGTGTCAGTCACAAAGTCGCAGAGGATCGCCTCAATTGCCA 597
Query 623 AGTATGTAACAATAGTGTCCCCAAACCAAGACGAACTCATAGCAATGGCAAACGCTCTCT 682
||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 598 AGTATGTAACAATAGTGTCCCCAAACCAAGACGAACTTATAACCCTGGCAAACGCTCTCT 657
Query 683 GCGCCAAGAATTTGTTTC-ATCCCTTTAGATCAGACGAAAATAAGCTTTCTATTGAAGAT 741
|||||||||| | |||| | |||||||||| ||| |||||||| |||||||||||||||
Sbjct 658 GCGCCAAGAAAAT-TTTCCACCCCTTTAGATTAGAAGAAAATAATCTTTCTATTGAAGAT 716
Query 742 ATGTTCCGTGCAC--TAAAGCCAGCTATTTTGGTTCTCCTTAAAAATGGTGTTAAAGTAG 799
|||||| ||||| |||||||||| ||||||||||||||| | |||| |||||||||||
Sbjct 717 ATGTTC--TGCACGCTAAAGCCAGCCATTTTGGTTCTCCTTGACAATGATGTTAAAGTAG 774
Query 800 TTATCGTAACTCTCGGCTCCAATGGAGCTCTCCTATGTTCCAAGGGAAACCCGAAAAAGG 859
||||||||||||| || ||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 775 TTATCGTAACTCTTGGTTCCAATGGAGCTCTCCTCTGCTCCAAGGGAAACCCGAAAATGG 834
Query 860 CTCTGAACATAGACAGAAAGTTTCTAAGAAGTGGAGAGGTCTTCAAAAGAGTACAGTCTG 919
|||||||| || |||||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 835 CTCTGAACTTAAACAGAAAGTTTCCAAGAAGTGGAGAGATCTTCAAAAGAGTACAATCTG 894
Query 920 TATGTTCACCAAACCGGTTTTCTGAATTGGGATCGAATCGCAGCCCGAGTCTTTTCGCAA 979
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 895 TATGTTCACCAAACAGGTTTTCTGAATTAGGATCGAATCGCAGCCCGAGTCTTTTTGCAA 954
Query 980 TGCATTTCCCAACCATCCCAGCCAAAGTCAAGAAGCTGACTGGTGCAGGTGATTGTCTGG 1039
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 955 TGCATTTACCAACCATCCCAGCCAAAGTCAAGAAGCTGACTGGTGCAGGTGATTGCCTGG 1014
Query 1040 TAGGCGGGACAGTTGCATCGCTAAGCGATGGGTTAGATCTAATCCAGAGTTTAGCGGTTG 1099
||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1015 TAGGCGGCACAGTCGCATCGCTAAGCGGTGGGTTAGATCTAATCCAGAGTTTAGCAGTTG 1074
Query 1100 GCATTGCGTCGGCGAAAGCAGCGGTTGAGTCAGATGATAATGTGCCTCCTGAGTTCAAGT 1159
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1075 GCATTGCCTCGGCTAAAGCAGCGGTTGAGTCAGATGATAATGTGCCTCCTGACTTCAAGT 1134
Query 1160 TGGATCTTATATCTGGTGATGCAGAGTTGGTATACAATGGCGCTAAGATGTTGATGGTTC 1219
|||||||||| | || ||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 1135 TGGATCTTATTTATGATGACGCAGAGGTAGTATACAATGGCGCTAAGATGTTGATGGTTC 1194
Query 1220 ACCAGTCGATGCTATGAA 1237
||||||||||||||||||
Sbjct 1195 ACCAGTCGATGCTATGAA 1212
> Ahg914012 jgi|Araly1|914012|Al_scaffold_0001_4266
Length=1032
Score = 1147 bits (621), Expect = 0.0
Identities = 814/907 (90%), Gaps = 13/907 (1%)
Strand=Plus/Plus
Query 332 GAATCTTGAGACGTGAAGACATTAGTACTCCCATTGTGTCCCTTGTATATGACACTAATG 391
||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||
Sbjct 137 GAATCTTGAGACGTGAAGACATTAGTACTCCCATTGTATCACTCGTATATGACACAAATG 196
Query 392 GAGAAGTTGCCGCTGGTGTTGCTGGCGTGGATGCCGTTGAAAATTTTTTAACACCTGAGT 451
|||||||||| ||| | | || | | ||||| |||||||| ||| | ||||||||||
Sbjct 197 GAGAAGTTGCTGCT-G-G-TG-T----T-GATGCAGTTGAAAAGTTTCTGACACCTGAGT 247
Query 452 GGATCCAGCGGTTTGAATACAACATAAGCTCTGCTCGTCTTCTTATGGTAGATGCAAATC 511
|||||||||||||| ||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 248 GGATCCAGCGGTTTAAATACAACATAAGCTCTGCTCCTGTTCTTATGGTGGATGCAAATC 307
Query 512 TTAGCTCTCTTGCTTTGGAAGCATCTTGCAAATTGGCTGCAGAGTCCAGTGTTCCTGTAT 571
||| | ||||||||||||||||||| || |||||||||| ||||| || |||||||||||
Sbjct 308 TTACCACTCTTGCTTTGGAAGCATCCTGTAAATTGGCTGTAGAGTTCAATGTTCCTGTAT 367
Query 572 GGTTTGAGCCAGTGTCAGTCACTAAGTCACAGAGGATCGCCTCAATTGCCAAGTATGTAA 631
|||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||||||| |||
Sbjct 368 GGTTTGAGCCTGTGTCAGTCACAAAGTCTCAGAGAATCGCCTCAGTTGCCAAGTATATAA 427
Query 632 CAATAGTGTCCCCAAACCAAGACGAACTCATAGCAATGGCAAACGCTCTCTGCGCCAAGA 691
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 428 CAGTAGTGTCCCCAAACCAAGACGAACTCATAGCGATGGCAAACGCTCTCTGCGCCAAGA 487
Query 692 ATTTGTTTCATCCCTTTAGATCAGACGAAAATAAGCTTTCTATTGAAGATATGTTCCGTG 751
||||||| || ||||||| |||||| |||| ||||||||| | |||| || ||||| |
Sbjct 488 ATTTGTTCCACCCCTTTAAATCAGAAGAAAGTAAGCTTTCCACCGAAGGCATATTCCGCG 547
Query 752 CACTAAAGCCAGCTATTTTGG-TTCTCCTTAAAAATGGTGTTAAAGTAGTTATCGTAACT 810
| ||||| ||||| | ||||| |||||||| |||||||| ||||||||||||| |||||
Sbjct 548 CGCTAAAACCAGCCA-TTTGGATTCTCCTTGAAAATGGTATTAAAGTAGTTATTGTAACC 606
Query 811 CTCGGCTCCAATGGAGCTCTCCTATGTTCCAAGGGAAACCCGAAAAAGGCTCTGAACATA 870
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 607 CTTGGATCCAATGGAGCTCTCCTATGCTCCAAGGGAAACCCGAAAAAGGCTCTGAACATA 666
Query 871 GACAGAAAGTTTCTAAGAAGTGGAGAGGTCTTCAAAAGAGTACAGTCTGTATGTTCACCA 930
|| |||||||| | |||||||||||| |||||||||| ||||| ||||||||| |||||
Sbjct 667 AACCGAAAGTTTATCAGAAGTGGAGAGATCTTCAAAAGGGTACAATCTGTATGTCCACCA 726
Query 931 AACCGGTTTTCTGAATTGGGATCGAATCGCAGCCCGAGTCTTTTCGCAATGCATTTCCCA 990
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 727 AACCGGTTTTCTGAATTATTATCGAATCGCAACCCGAGTCTTTTCGCAATGCATTTCCCA 786
Query 991 ACCATCCCAGCCAAAGTCAAGAAGCTGACTGGTGCAGGTGATTGTCTGGTAGGCGGGACA 1050
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 787 ACCATCCCAGCCAAAGTCAAGAAACTCACTGGTGCAGGTGATTGTCTGGTAGGCGGGACA 846
Query 1051 GTTGCATCGCTAAGCGATGGGTTAGATCTAATCCAGAGTTTAGCGGTTGGCATTGCGTCG 1110
|| ||||||||||||||||| ||||||||||| || |||||||| ||||||||||| |||
Sbjct 847 GTCGCATCGCTAAGCGATGGTTTAGATCTAATTCAAAGTTTAGCAGTTGGCATTGCCTCG 906
Query 1111 GCGAAAGCAGCGGTTGAGTCAGATGATAATGTGCCTCCTGAGTTCAAGTTGGATCTTAT- 1169
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 907 GCTAAAGCAGCGGTTGAGTCAGACGATAATGTGCCTCCTGAGTTCAATTTGGATCTTGTT 966
Query 1170 ATCTGGTGATGCAGAGTTGGTATACAATGGCGCTAAGATGTTGATGGTTCACCAGTCGAT 1229
| | | |||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 967 ACC-GATGATGCGGAGTTGGTATACTATGGCGCGAAGATGTTGATGGTTCATCAGTCGAT 1025
Query 1230 GCTATGA 1236
|||||||
Sbjct 1026 GCTATGA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5