BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G49370.1

Length=1428
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923304 jgi|Araly1|923304|scaffold_104585.1                        302    6e-81
  Ahg923303 jgi|Araly1|923303|scaffold_104584.1                        224    1e-57


> Ahg923304 jgi|Araly1|923304|scaffold_104585.1
Length=316

 Score =  302 bits (163),  Expect = 6e-81
 Identities = 203/222 (91%), Gaps = 4/222 (2%)
 Strand=Plus/Plus

Query  207  TGTTAGGTGTTGGAATATTGGCTATTCCTTATGCACTTTCCTCAAGTGGATGGATTAGCA  266
            ||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct  96   TGTCAGGTGTTGGAATCTTGGCTATTCCTTATGCACTTTCGTCAAGTGGATGGATTAGCA  155

Query  267  TTCTGTTTTTCTTTCTAATTGGTGTAACAACTTGGTACACCGGTTTGCTTCTCCAACGTT  326
            |||||||||||||||||||||| ||||||||||||||||| ||||| || |||| |||||
Sbjct  156  TTCTGTTTTTCTTTCTAATTGGAGTAACAACTTGGTACACTGGTTTACTCCTCCGACGTT  215

Query  327  GCCTCAAACTCGACCCTATGGT--T-CGTAGTTACCCTGATCTAGCGAACAAAGCGTTTG  383
            |||||| |||||||||||||||  | || ||||||||||||||||| ||||||||||| |
Sbjct  216  GCCTCACACTCGACCCTATGGTACTTCGAAGTTACCCTGATCTAGCAAACAAAGCGTT-G  274

Query  384  GGAAGAAAGGTCGGTTATTAGTCTCTTTCTTCATATACATCG  425
            ||||||||| |||| || ||| ||||||||||||||||||||
Sbjct  275  GGAAGAAAGATCGGGTACTAGCCTCTTTCTTCATATACATCG  316


> Ahg923303 jgi|Araly1|923303|scaffold_104584.1
Length=268

 Score =  224 bits (121),  Expect = 1e-57
 Identities = 215/256 (84%), Gaps = 24/256 (9%)
 Strand=Plus/Plus

Query  953   AATCTTTGGATATCTTATGTATGGAGAAGAGGTGCAATCACAAATCACTTTAAACCTTCC  1012
             ||||| || |||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  5     AATCTATGCATATCTAATGTATGGAGAAGAGGTGCAATCACAAATTACTTTAAACCTTCC  64

Query  1013  AACTCATAATATCAGCGCGGTGATAGCAATATCTACTACAATCGTGAGTCCGCTAACCAA  1072
             ||||||| | ||  | ||      ||         |  |    ||||| |||||||||||
Sbjct  65    AACTCAT-A-AT--G-GC------AG---------C-GC---GGTGAGCCCGCTAACCAA  100

Query  1073  ATACGCATTAATTCTTTCCCCGATCATGGAAGCAATCAATACACGATTGATCCAAGCAAA  1132
             |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  101   ATACGCATTAATCCTTTCCCCGATCATGGAAGCAATCAATACACGATTGATTCAAGCAAA  160

Query  1133  CTATAAAAGGAGAAGCCTCCGGATGTTGACTGGAACGGGGCTGGTTTTAGGAACAATATT  1192
             ||| |||||||||||| ||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct  161   CTACAAAAGGAGAAGCGTCCGGATATCGACCGGAACCGGGCTGGTTTTAGGAACAATATT  220

Query  1193  GGTTGCACTTGTTGTG  1208
             | ||| ||||||||||
Sbjct  221   GATTGTACTTGTTGTG  236



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53402523490


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5