BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49400.1
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474078 jgi|Araly1|474078|fgenesh2_kg.1__4032__AT1G49400.1 889 0.0
> Ahg474078 jgi|Araly1|474078|fgenesh2_kg.1__4032__AT1G49400.1
Length=795
Score = 889 bits (481), Expect = 0.0
Identities = 628/693 (91%), Gaps = 33/693 (5%)
Strand=Plus/Plus
Query 116 aaaaaaaaTATGAAGCCAGTGATAGGCACAGTGGTATCGAACAAGATGCAAAAATCTGTA 175
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 86 AAAAAAAAAATGAAGCCAGTAATAGGCACAGTGGTATCGAACAAGATGCAGAAATCGGTA 145
Query 176 GTGGTCGCCGTCGATAGACTCTTCCACAACAAAATCTACAATCGCTACGTCAAA-CGAAC 234
|| |||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||
Sbjct 146 GTCGTCGCCGTCGATAGACTCTTCCACAACAAACTCTACAATCGCTACGT-AAAGCGCAC 204
Query 235 TTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCGGCGATCGAGTGAAGTT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 TTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCGGCGATCGAGTGAAGTT 264
Query 295 AGATCCATCAAGGCCTTTGAGCAAGAATAAGCATTGGATTGTTGCAGAAATCATCAAAAA 354
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 265 AGATCCATCAAGGCCATTGAGCAAGAATAAGCATTGGGTTGTTGCTGAAATCATCAAAAA 324
Query 355 AGCTCGAATTTATTCTCCTAAAgctgctgctgctgctgtt-tctgcttctgcttctgctt 413
||||||||| |||||||| | || ||||||||||||||| | ||||||| |||||||||
Sbjct 325 AGCTCGAATCTATTCTCCGGAGGCGGCTGCTGCTGCTGTTGT-TGCTTCTTCTTCTGCTT 383
Query 414 cCTCAGCCTCCACTACTGACTCTTCTGCTCAGTCTCAGATTCCTCCATCATCTACTTCTT 473
|||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CCTCTGCCTCCATTGCTGACTCTTCTGCTCAGTCTCAGATTCCTCCATCATCTACTTCTT 443
Query 474 AAGTTGTTTTAAGAGAAACGTTGCATAGCGAAGCGAGAA-A-GTTGCTAGGAGTTGTTAC 531
|||||||||||||||||||||||||||| ||||||| || | || |||||||||||||||
Sbjct 444 AAGTTGTTTTAAGAGAAACGTTGCATAGAGAAGCGAAAACATGTAGCTAGGAGTTGTTAC 503
Query 532 TATGAGCATATTGCATCGAAG------CTTTTGGATCATGTCTGTGATATTT-GATTTCC 584
|||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 504 GATGATCATATTGCATCGAAGTTTATGCTTTTGGATCATGTCTGTGATATTTTGATTTCC 563
Query 585 TGAGATGATAATGAGTTATATGATGGT-ACTAGATTATCTGGTGAAAGTAGATGAATAA- 642
||||||||| |||||||||||||||| | |||||| |||||||||||| |||||||||
Sbjct 564 TGAGATGATTATGAGTTATATGATGGGGA-TAGATTCTCTGGTGAAAGTTGATGAATAAA 622
Query 643 CACAT---GTTAAGATACTCTGTCTTCTTATGTTATTTTGGCAAATCATCAGTGCATTGC 699
||| | ||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 623 CACCTCCTGTTAAGAAACTCTGTCTTCTTATGTTATTTTGGCAAATCATCAGTGTATTGC 682
Query 700 -CTTTTAAGCAGAAGTGTGAGATAGTGATGAGTTGTTATTACATTCGTTATTTTGGGTAT 758
|||| |||||||||||||||||||||||||||||||||| || | || |||
Sbjct 683 ACTTT-AAGCAGAAGTGTGAGATAGTGATGAGTTGTTATT---TT-G-------GG-TAT 729
Query 759 GGAACAATGAGTGAAAATGTATCTTTGGCTCTA 791
||||||||||||||||||| |||||||||||||
Sbjct 730 GGAACAATGAGTGAAAATGCATCTTTGGCTCTA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31032054438
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5