BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49405.1
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314359 jgi|Araly1|314359|fgenesh1_pm.C_scaffold_1003139 782 0.0
Ahg914000 jgi|Araly1|914000|Al_scaffold_0001_4254 704 0.0
> Ahg314359 jgi|Araly1|314359|fgenesh1_pm.C_scaffold_1003139
Length=459
Score = 782 bits (423), Expect = 0.0
Identities = 447/459 (97%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGAGGTTCCTGGCTCTGTAGGCACAACTGCAAGCCTTTCCTTAAGGTTAGGGCAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGAGGTTCCTGGCTCTGTAGGCACAACTGCAAGCCTTTCCTTAAGGTTAGGGCAA 60
Query 61 ATGGTATTAGCATTTGGCTCTCTTCTCTTCATGACCATCGGTGTTCGCTTCTACCAATTC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGGTATTAGCATTTGGCTCTCTTCTCTTCATGACCATCGGTGTTCGCTTCTACCAATTC 120
Query 121 ACTGCTTTCTGCTACTTGGTGACGATCATGTCTTTAGCTATACCATGGAATCTGACGTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTGCTTTCTGCTACTTGGTGACGATCATGTCTTTAGCTATACCATGGAATCTGACGTTA 180
Query 181 GCAATGGTAGATATCTATTGTGTTATTCTCCAGCAACCATTTCAAAAGCCACGGATCCTT 240
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GCAATGGTAGATATCTACTGTGTTATTCTCCAGCAACCGTTTCAAAAGCCACGGATCCTT 240
Query 241 CTCGCTATCTCTATTGGTGATTGGGTGGTGTCTGTTCTAGCGTTGGCTTCAGCGTCATCG 300
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 241 CTCGCTGTCTCTATTGGTGATTGGGTGGTGTCTGTTCTAGTGTTGGCTTCAGCTTCATCC 300
Query 301 GCAGCTAGTGTTGTTGATATTCTGCGATCAAACGAATCCTCCTGCCCTCCAACAATATGC 360
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 301 GCAGCTAGTGTTGTTGATATTCTGCGATCAAACGAATCCTCTTGTCCTCCAACAATCTGC 360
Query 361 AACAGATATCAGTTTGCAGCAACATTAGctttcttgacttggttcttgtctctctcttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACAGATATCAGTTTGCAGCAACATTAGCTTTCTTGACTTGGTTCTTGTCTCTCTCTTCT 420
Query 421 tctctcttcaatctctggttacttccttctctgatctAA 459
|| ||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCCTCTTCAATCTCTGGTTACTTCCTTCTCTGATCTAA 459
> Ahg914000 jgi|Araly1|914000|Al_scaffold_0001_4254
Length=459
Score = 704 bits (381), Expect = 0.0
Identities = 433/459 (94%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGAGGTTCCTGGCTCTGTAGGCACAACTGCAAGCCTTTCCTTAAGGTTAGGGCAG 60
||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGAGGTCCCTAGCTCTGTGGGCACAACTGCAAGCCTTTCCTTAAGGTTAGGGCAA 60
Query 61 ATGGTATTAGCATTTGGCTCTCTTCTCTTCATGACCATCGGTGTTCGCTTCTACCAATTC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGGTATTAGCATTTGGCTCTCTTCTCTTCATGACCATCGGTGTTCGCTTCTACCAATTC 120
Query 121 ACTGCTTTCTGCTACTTGGTGACGATCATGTCTTTAGCTATACCATGGAATCTGACGTTA 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 121 ACTGCTTTCTGCTACTTGGTGACGATCATGTCATTAGCTATACCATGGAATCTGACATTA 180
Query 181 GCAATGGTAGATATCTATTGTGTTATTCTCCAGCAACCATTTCAAAAGCCACGGATCCTT 240
|| | |||||||||||||| ||| |||| | |||||||||||||||||||||||||||
Sbjct 181 GCTGTAGTAGATATCTATTGCGTTCTTCTTAACCAACCATTTCAAAAGCCACGGATCCTT 240
Query 241 CTCGCTATCTCTATTGGTGATTGGGTGGTGTCTGTTCTAGCGTTGGCTTCAGCGTCATCG 300
|||| ||| ||||||| |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 241 CTCGTTATATCTATTGTTGATTGGGTGGTGTCTGTTCTAGCTTTGGCTTCAGCTTCATCA 300
Query 301 GCAGCTAGTGTTGTTGATATTCTGCGATCAAACGAATCCTCCTGCCCTCCAACAATATGC 360
|||||||||||||| |||||| |||||||| |||||||||| |||||||||||||| |||
Sbjct 301 GCAGCTAGTGTTGTAGATATTTTGCGATCAGACGAATCCTCTTGCCCTCCAACAATCTGC 360
Query 361 AACAGATATCAGTTTGCAGCAACATTAGctttcttgacttggttcttgtctctctcttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACAGATATCAGTTTGCAGCAACATTAGCTTTCTTGACTTGGTTCTTGTCTCTCTCTTCT 420
Query 421 tctctcttcaatctctggttacttccttctctgatctAA 459
|||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCTCTTCAATCTCTGGTTACTTCCTTCTCTGATCTAA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16597681215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5