BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G49410.1

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923329 jgi|Araly1|923329|scaffold_104610.1                        263    1e-69


> Ahg923329 jgi|Araly1|923329|scaffold_104610.1
Length=207

 Score =  263 bits (142),  Expect = 1e-69
 Identities = 172/186 (92%), Gaps = 4/186 (2%)
 Strand=Plus/Plus

Query  1    ATGTTCCCAGGAATGTTCATGCGAAAGCCAGACAAAGCCGAGGCTCTGAAGCAGCTACGC  60
            ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct  23   ATGTTTCCAGGAATGTTCATGCGAAAGCCAGACAAAGCCGTGGCTCTGAAGCAGCTACGG  82

Query  61   ACTCATGTCGCTCTTTTTGGCAGCTGGGTTGTCATTATCCGTGCTGCTCCCTACGTCCTC  120
            || ||||| |||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct  83   ACCCATGTGGCTCTTTTTGGCGGCTGGGTTGTCATTGTCCGTGCTGTTCCCTACGTCCTC  142

Query  121  TCCTATTTCTCCGATTCCAAAGATGAGCTCAAGATCGATTTCTAAATGACTCTTTC-AAT  179
            |||||||||||||||||||||||||||||||||||||| ||||||  | ||||| | |||
Sbjct  143  TCCTATTTCTCCGATTCCAAAGATGAGCTCAAGATCGACTTCTAAG-G-CTCTT-CGAAT  199

Query  180  TTTCAG  185
            ||||||
Sbjct  200  TTTCAG  205



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5