BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G49420.1 Length=570 Score E Sequences producing significant alignments: (Bits) Value Ahg914016 jgi|Araly1|914016|Al_scaffold_0001_4270 673 0.0 Ahg493247 jgi|Araly1|493247|fgenesh2_kg.7__2680__AT4G16380.2 139 2e-32 > Ahg914016 jgi|Araly1|914016|Al_scaffold_0001_4270 Length=534 Score = 673 bits (364), Expect = 0.0 Identities = 488/545 (90%), Gaps = 19/545 (3%) Strand=Plus/Plus Query 34 ATGAAATTGAAGACGGAGCCTCTTAGTAACGAAAAGAATTTCTCGAAAGTCAAGAAGGCT 93 |||||||||||||||| |||||||| | |||||||||| |||| ||||||||||| ||| Sbjct 1 ATGAAATTGAAGACGGCGCCTCTTAATTCCGAAAAGAATCTCTCAAAAGTCAAGAATGCT 60 Query 94 CTTTCG-AGCATACCTCAAGTAAGAGACCAAAAGTTCGAAGAAGAAACCAACACGGTCAC 152 |||| | ||| |||||||||||||||||||||||||||| ||||||| |||||| || || Sbjct 61 CTTT-GCAGCTTACCTCAAGTAAGAGACCAAAAGTTCGATGAAGAAAACAACACAGTGAC 119 Query 153 AATCAAAGTGGTTTGCTGCAGTCCTGAGAAAGTGATGGACAAACTCTGTTCCAAAGGACG 212 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120 AATCAAAGTGGTTTGTTGCAGTCCTGAGAAAGTCATGGACAAACTCTGTTCCAAAGGACG 179 Query 213 TGGAGCTATTAAGCTCATCGAAACCATCGATCCGGCCAAACATGTGGCTCAAAAGCCCAA 272 |||||||||||||||||||||||||||||||||| |||||| || ||| ||||||||||| Sbjct 180 TGGAGCTATTAAGCTCATCGAAACCATCGATCCGCCCAAACCTGCGGCCCAAAAGCCCAA 239 Query 273 AGAACCTGAGAAGCCCAAAGAAGCTGAAAAACCTAAAGAACCAGAGAAGCCCAAACCAGC 332 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 240 AGAACCTGAGAAGCCCAAAGAAGCTGAAAAACCTAAAGAAGCAGAGAAGCCCAAACCAGC 299 Query 333 AGCAGCTCCAGCTCAAGGCGATCCAAGTTCTCAACGGGTGACACATGGGTATAATCCACC 392 | | | |||||||| |||||||||||||||||| |||| |||||||||||||||| | Sbjct 300 A-C--C---AGCTCAAGCCGATCCAAGTTCTCAACGCGTGATACATGGGTATAATCCAGC 353 Query 393 GCCGATGATGGGCCATCCGGTGCCTTGGTCTGATGGGCCTAACTACGGATGGTCCCGACC 452 | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 GTCGATGATGGGCCAGCCGGTGCCTTGGTCTGATGGGCCTAACTACGGATGGTCCCGACC 413 Query 453 CAATGGGTATGATGAAAGACCCATTTACAATAGCTACGGAGGTTGGCAACCACCACCATC 512 |||||| ||||||||||| || |||| ||||||| ||| |||||| ||||||||||| Sbjct 414 CAATGGATATGATGAAAGGCCAATTTTTGATAGCTATGGAAGTTGGCGACCACCACCATT 473 Query 513 GCAATATGG-T--GG---CAGATCACATTACGAAGAGGAA-CAACCGTCTTGCTCCATCA 565 ||||||||| | || ||||||||||||| |||| ||| | |||| ||||||||| Sbjct 474 GCAATATGGATATGGTAGCAGATCACATTACCAAGAAGAATCG-CCGT---GCTCCATCA 529 Query 566 TGTGA 570 ||||| Sbjct 530 TGTGA 534 > Ahg493247 jgi|Araly1|493247|fgenesh2_kg.7__2680__AT4G16380.2 Length=1013 Score = 139 bits (75), Expect = 2e-32 Identities = 172/216 (80%), Gaps = 17/216 (8%) Strand=Plus/Plus Query 1 ATGGCCGAGAAGGGTAAGGAGAAGGTAAC-ATGGATGAAATTGAAGACGGAGCCTCTTAG 59 |||||||||||||| ||||| |||||||| || |||||| |||||| ||| |||| | Sbjct 83 ATGGCCGAGAAGGGCAAGGAAAAGGTAACTAT-GATGAAGTTGAAGGTGGA---TCTT-G 137 Query 60 -TAACGAAAAGAATTTCTCGAAAGTCAAGAAGGCTCTTTCG-AGCA-TACCTCAAGTAAG 116 | | ||| || | |||||| ||||||| ||||| | | | | |||||| |||| Sbjct 138 ATTGTGCCAAGTGTTACAAGAAAGTGAAGAAGGTTCTTT-GCA-AATTCCCTCAAATAAG 195 Query 117 AGACCAAAAGTTCGAAGAAGAA-ACCAACACGGTCA-CAATCAAAGTGGTTTGCTGCAGT 174 ||||||| |||||| ||| || |||||| |||| | ||||||||||||||||||||| Sbjct 196 AGACCAATTGTTCGATGAA-AAGTCCAACATTGTCATC-ATCAAAGTGGTTTGCTGCAGT 253 Query 175 CCTGAGAA-AGTGATGGACAAACTCTGTTCCAAAGG 209 |||||||| | | ||||||||||||||||||||||| Sbjct 254 CCTGAGAAGA-TCATGGACAAACTCTGTTCCAAAGG 288 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20832951594 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5