BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49420.1
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914016 jgi|Araly1|914016|Al_scaffold_0001_4270 673 0.0
Ahg493247 jgi|Araly1|493247|fgenesh2_kg.7__2680__AT4G16380.2 139 2e-32
> Ahg914016 jgi|Araly1|914016|Al_scaffold_0001_4270
Length=534
Score = 673 bits (364), Expect = 0.0
Identities = 488/545 (90%), Gaps = 19/545 (3%)
Strand=Plus/Plus
Query 34 ATGAAATTGAAGACGGAGCCTCTTAGTAACGAAAAGAATTTCTCGAAAGTCAAGAAGGCT 93
|||||||||||||||| |||||||| | |||||||||| |||| ||||||||||| |||
Sbjct 1 ATGAAATTGAAGACGGCGCCTCTTAATTCCGAAAAGAATCTCTCAAAAGTCAAGAATGCT 60
Query 94 CTTTCG-AGCATACCTCAAGTAAGAGACCAAAAGTTCGAAGAAGAAACCAACACGGTCAC 152
|||| | ||| |||||||||||||||||||||||||||| ||||||| |||||| || ||
Sbjct 61 CTTT-GCAGCTTACCTCAAGTAAGAGACCAAAAGTTCGATGAAGAAAACAACACAGTGAC 119
Query 153 AATCAAAGTGGTTTGCTGCAGTCCTGAGAAAGTGATGGACAAACTCTGTTCCAAAGGACG 212
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 AATCAAAGTGGTTTGTTGCAGTCCTGAGAAAGTCATGGACAAACTCTGTTCCAAAGGACG 179
Query 213 TGGAGCTATTAAGCTCATCGAAACCATCGATCCGGCCAAACATGTGGCTCAAAAGCCCAA 272
|||||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||
Sbjct 180 TGGAGCTATTAAGCTCATCGAAACCATCGATCCGCCCAAACCTGCGGCCCAAAAGCCCAA 239
Query 273 AGAACCTGAGAAGCCCAAAGAAGCTGAAAAACCTAAAGAACCAGAGAAGCCCAAACCAGC 332
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 AGAACCTGAGAAGCCCAAAGAAGCTGAAAAACCTAAAGAAGCAGAGAAGCCCAAACCAGC 299
Query 333 AGCAGCTCCAGCTCAAGGCGATCCAAGTTCTCAACGGGTGACACATGGGTATAATCCACC 392
| | | |||||||| |||||||||||||||||| |||| |||||||||||||||| |
Sbjct 300 A-C--C---AGCTCAAGCCGATCCAAGTTCTCAACGCGTGATACATGGGTATAATCCAGC 353
Query 393 GCCGATGATGGGCCATCCGGTGCCTTGGTCTGATGGGCCTAACTACGGATGGTCCCGACC 452
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GTCGATGATGGGCCAGCCGGTGCCTTGGTCTGATGGGCCTAACTACGGATGGTCCCGACC 413
Query 453 CAATGGGTATGATGAAAGACCCATTTACAATAGCTACGGAGGTTGGCAACCACCACCATC 512
|||||| ||||||||||| || |||| ||||||| ||| |||||| |||||||||||
Sbjct 414 CAATGGATATGATGAAAGGCCAATTTTTGATAGCTATGGAAGTTGGCGACCACCACCATT 473
Query 513 GCAATATGG-T--GG---CAGATCACATTACGAAGAGGAA-CAACCGTCTTGCTCCATCA 565
||||||||| | || ||||||||||||| |||| ||| | |||| |||||||||
Sbjct 474 GCAATATGGATATGGTAGCAGATCACATTACCAAGAAGAATCG-CCGT---GCTCCATCA 529
Query 566 TGTGA 570
|||||
Sbjct 530 TGTGA 534
> Ahg493247 jgi|Araly1|493247|fgenesh2_kg.7__2680__AT4G16380.2
Length=1013
Score = 139 bits (75), Expect = 2e-32
Identities = 172/216 (80%), Gaps = 17/216 (8%)
Strand=Plus/Plus
Query 1 ATGGCCGAGAAGGGTAAGGAGAAGGTAAC-ATGGATGAAATTGAAGACGGAGCCTCTTAG 59
|||||||||||||| ||||| |||||||| || |||||| |||||| ||| |||| |
Sbjct 83 ATGGCCGAGAAGGGCAAGGAAAAGGTAACTAT-GATGAAGTTGAAGGTGGA---TCTT-G 137
Query 60 -TAACGAAAAGAATTTCTCGAAAGTCAAGAAGGCTCTTTCG-AGCA-TACCTCAAGTAAG 116
| | ||| || | |||||| ||||||| ||||| | | | | |||||| ||||
Sbjct 138 ATTGTGCCAAGTGTTACAAGAAAGTGAAGAAGGTTCTTT-GCA-AATTCCCTCAAATAAG 195
Query 117 AGACCAAAAGTTCGAAGAAGAA-ACCAACACGGTCA-CAATCAAAGTGGTTTGCTGCAGT 174
||||||| |||||| ||| || |||||| |||| | |||||||||||||||||||||
Sbjct 196 AGACCAATTGTTCGATGAA-AAGTCCAACATTGTCATC-ATCAAAGTGGTTTGCTGCAGT 253
Query 175 CCTGAGAA-AGTGATGGACAAACTCTGTTCCAAAGG 209
|||||||| | | |||||||||||||||||||||||
Sbjct 254 CCTGAGAAGA-TCATGGACAAACTCTGTTCCAAAGG 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20832951594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5