BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49430.1
Length=2327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474081 jgi|Araly1|474081|fgenesh2_kg.1__4035__AT1G49430.1 3611 0.0
> Ahg474081 jgi|Araly1|474081|fgenesh2_kg.1__4035__AT1G49430.1
Length=2291
Score = 3611 bits (1955), Expect = 0.0
Identities = 2207/2324 (95%), Gaps = 35/2324 (2%)
Strand=Plus/Plus
Query 6 AGACTTTTATTAACCTTCAAAACATTATTTATTATTCCAATCTTCAAAGAGAGACACTCA 65
|||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||
Sbjct 1 AGACTTTTATTAACCTTCAAAATATTATTTATTTTTCCAATCTTCAAATAGAGACACTCT 60
Query 66 CACTCCTTATC-TTCTTCATTCCTCCATCCTATTTTTCTTCTTCGCCAAAGTGTTATTCC 124
||||||||||| ||| ||| |||||||||| | |||||||||| ||||||||| |||
Sbjct 61 CACTCCTTATCTTTC-TCA-TCCTCCATCCGA-ATTTCTTCTTCATTAAAGTGTTAATCC 117
Query 125 TCAACTTTATATATTACACAAATGTCTTTAGCCGCGGATAATGTGTTGTTGGTGGAAGAA 184
|||| | | || | | | | | | |||| ||||||||||||||||||||
Sbjct 118 TCAA---T-GGT-TT---C--A-G-C----G--GTGGATCATGTGTTGTTGGTGGAAGAA 159
Query 185 GGAAGGCCAGCCACAGCGGAACATCCATCGGCCGGACCGGTTTATCGATGTAAATACGCT 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 GGAAGGCCAGCCACGGCGGAACATCCATCGGCCGGACCGGTTTATCGATGTAAATACGCT 219
Query 245 AAAGATGGCCTCCTCGATCTCCCTACCGATATTGATTCTCCTTGGCAGTTCTTTAGTGAG 304
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 220 AAAGATGGCCTCCTCGATCTTCCTACCGATATTGATTCTCCTTGGCAGTTCTTTAGTGAG 279
Query 305 GCTGTGAAGAAATATCCGAATGAGCAAATGTTGGGCCAACGCGTAACGACTGATTCTAAG 364
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 280 GCTGTGAAGAAATATCCGAATGAGCAAATGTTGGGCCGACGCTTAACGACTGATTCTAAG 339
Query 365 GTCGGTCCATACACGTGGATCACATATAAGGAAGCGCACGACGCTGCAATTCGGATTGGA 424
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 340 GTCGGTCCATACACGTGGATCACATATAAGGAAGCCCACGATGCTGCAATTCGGATTGGA 399
Query 425 TCAGCAATCAGAAGCCGAGGCGTTGATCCGGGACACTGTTGTGGTATTTACGGAGCTAAT 484
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 400 TCAGCAATCAGAAGCCGTGGCGTTGATCCGGGACATTGTTGTGGTATTTACGGATCTAAT 459
Query 485 TGTCCAGAATGGATTATTGCAATGGAGGCCTGCATGAGCCAAGGGATCACCTACGTGCCT 544
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 460 TGTCCAGAATGGATTATTGCAATGGAGGCCTGCATGAGCCAAGGGATAACATACGTGCCT 519
Query 545 CTATACGATTCTTTAGGCGTAAACGCAGTTGAATTCATCATCAACCACGCCGAGGTTTCG 604
||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 520 CTATACGATACTTTAGGCGTAAACGCAGTTGAATTCATCATCAATCATGCCGAGGTTTCG 579
Query 605 CTAGTATTTGTTCAAGAGAAGACAGTTTCATCGATCTTATCGTGCCAAAAGGGATGTTCT 664
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 580 CTAGTATTTGTTCAAGAGAAGACAGTTTCATCCATCTTATCGTGCCAAAAGGGATGTTCT 639
Query 665 TCGAATTTGAAGACTATTGTGAGCTTCGGGGAAGTCTCGAGTACACAAAAGGAAGAAGCT 724
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TCAAATTTGAAGACTATTGTGAGCTTCGGGGAAGTCTCGAGTACACAAAAGGAAGAAGCT 699
Query 725 AAGAACCAATGTGTTTCTTTATTTTCATGGAATGAGTTCTCACTAATGGGAAACTTAGAT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 700 AAGAACCAATGTGTTTCTTTATTTTCATGGAATGAGTTCTCACTAATGGGAAACTCAGAT 759
Query 785 GAGGCAAATCTACCTCGTAAGCGAAAGACAGACATCTGCACAATAATGTACACAAGCGGG 844
||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 760 GAGACAAACCTACCCCGTAAGCGAAAGACAGACATTTGCACAATAATGTACACAAGCGGG 819
Query 845 ACGACTGGAGAACCCAAAGGTGTAATCTTAAACAACGCAGCAATTTCGGTCCAGGTTTTA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 820 ACGACTGGAGAACCCAAAGGTGTAATCTTAAACAACGCAGCAATTTCGGTCCAAGTTTTA 879
Query 905 TCCATAGACAAAATGCTTGAAGTCACTGATCGATCGTGTGACACGAGCGATGTGTTCTTC 964
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 880 TCCATTGACAAAATGCTTGAAGTCACCGATCGATCGTGTGACACGAGCGATGTGTTCTTC 939
Query 965 TCGTACTTGCCATTAGCACATTGCTATGATCAAGTCATGGAGATTTACTTTTTATCTAGA 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TCGTACTTGCCATTAGCACATTGCTATGATCAAGTCATGGAGATTTACTTTTTATCTAGA 999
Query 1025 GGCTCCTCTGTTGGATACTGGCGTGGCGACATTCGGTACCTGATGGATGATGTTCAAGCT 1084
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1000 GGCTCCTCTGTTGGATACTGGCGTGGCGACATTCGGTACCTGATGGATGACGTTCAAGCT 1059
Query 1085 CTTAAACCTACTGTGTTTTGCGGTGTTCCACGAGTTTACGACAAACTATATGCCGGTATA 1144
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 CTGAAACCTACTGTGTTTTGCGGTGTTCCACGAGTTTACGACAAACTATATGCCGGTATA 1119
Query 1145 ATGCAAAAAATATCAGCTAGTGGCTTGATACGCAAGAAACTGTTTGATTTTGCTTATAAC 1204
||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1120 ATGCAAAAAATCTCAGCTAGTGGCTTGTTACGCAAGAAACTGTTCGATTTTGCTTATAAC 1179
Query 1205 TACAAATTGGGAAATATGAGAAAAGGATTCTCTCAAGAAGAAGCTTCTCCTCGTCTAGAC 1264
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1180 TACAAATTGGGAAATATGAGAAAAGGATTCTCCCAGGAAGAAGCTTCTCCTCGTCTAGAC 1239
Query 1265 AGACTTATGTTCGATAAGATAAAAGAAGCATTAGGAGGAAGAGCTCATATGTTGTTATCA 1324
|||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 1240 AGACTTATGTTCGATAAGCTTAAAGAAGCACTAGGAGGAAGAGCTCATATGTTGTTATCA 1299
Query 1325 GGAGCAGCGCCTCTACCTCGTCATGTAGAGGAGTTCTTGAGAATCATTCCTGCCTCTAAT 1384
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GGTGCAGCGCCTTTACCTCGTCATGTAGAGGAGTTCTTGAGAATCATTCCTGCCTCTAAT 1359
Query 1385 CTCTCTCAAGGTTATGGATTGACTGAGAGTTGTGGGGGAAGCTTCACGACCTTAGCCGGA 1444
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1360 CTCTCTCAAGGTTATGGACTGACTGAGAGTTGTGGGGGAAGCTTCACGACCTTAGCGGGA 1419
Query 1445 GTATTTTCTATGGTGGGGACAGTGGGTGTGCCAATGCCCACGGTGGAGGCAAGGCTAGTG 1504
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1420 GTATTTTCTATGGTGGGGACAGTGGGTGTGCCAATGCCGACAGTGGAGGCAAGGTTAGTG 1479
Query 1505 TCCGTACCAGAGATGGGTTACGACGCCTTTTCCGCTGACGTGCCGAGAGGAGAGATTTGT 1564
|||||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct 1480 TCCGTACCGGAGATGGGTTATGATGCCTTTTCTGCCGACGTGCCGAGAGGAGAGATTTGT 1539
Query 1565 CTTAGAGGAAATTCAATGTTTTCTGGTTACCATAAAAGACAAGATCTAACTGATCAAGTC 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 CTTAGAGGAAATTCAATGTTTTCTGGTTACCATAAAAGACAAGATCTAACTGATCAAGTC 1599
Query 1625 CTAATCGATGGATGGTTCCACACAGGAGATATTGGAGAATGGCAAGAAGATGGATCAATG 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 CTAATCGATGGATGGTTCCACACAGGAGATATTGGAGAATGGCAAGAAGATGGATCAATG 1659
Query 1685 AAGATCATCGATAGGAAGAAGAACATCTTCAAGTTGTCTCAAGGTGAATATGTTGCTGTT 1744
|||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1660 AAGATCATAGATAGGAAGAAGAACATCTTCAAGCTGTCTCAAGGTGAGTATGTTGCTGTT 1719
Query 1745 GAAAACCTCGAAAACACTTACTCAAGATGTCCCCTCATTGCTCAGATATGGGTCTATGGC 1804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 GAAAACCTCGAAAACACTTACTCAAGATGTCCCCTCATTGCTCAGATATGGGTCTATGGA 1779
Query 1805 AACAGCTTCGAGTCATTTTTGGTAGGTGTGGTTGTACCTGATAGAAAAGCTATTGAAGAT 1864
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1780 AACAGCTTCGAGTCGTTTTTGGTAGGTGTGGTTGTACCTGATAGAAAGGCTATTGAAGAT 1839
Query 1865 TGGGCTAAACTCAATTACCAATCTCCCAATGATTTCGAATCTCTATGTCAAAATCTCAAA 1924
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1840 TGGGCTAAACTCAATAACCAATCTCCCAATGATTTTGAATCTCTATGTCAAAATCTCAAA 1899
Query 1925 GCTCAAAAATACTTCTTGGATGAGCTTAACTCTACCGCAAAGCAATATCAACTTAAAGGA 1984
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1900 GCTCAAAAATACTTCTTGGATGAGCTTAACTCTACTGCAAAACAATATCAACTTAAAGGA 1959
Query 1985 TTTGAAATGTTAAAAGCTATTCATTTAGAACCAAACCCTTTTGATATTGAAAGAGATCTT 2044
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1960 TTTGAAATGTTAAAGGCTATTCATTTAGAACCAAACCCTTTTGACATTGAAAGAGATCTT 2019
Query 2045 ATTACTCCAACTTTCAAGCTGAAAAGGCCACAGCTCCTCCAACATTACAAGGGCATAGTT 2104
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2020 ATTACTCCAACATTCAAGCTGAAAAGGCCACAGCTTCTCCAACATTACAAGGGCATAGTT 2079
Query 2105 GATCAACTTTATTCAGAAGCAAAGAGGTCCATGGCATAGATAATTAGATACCGATCGGCT 2164
|| ||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 2080 GACCAACTTTATTCAGAAGCCAAGAGGTCCATGGCATAGATA--------CCGATCGGCT 2131
Query 2165 ATTCATTTTCTGATGCTATTTGGGTTTGTATGATATGTTACAAAATTGTGTTCGGATCCT 2224
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2132 ATTCATTTTCTGATGCTATTTGGGTTTGTATGATGTGTTACAAAATTGTGTTCGGATCCT 2191
Query 2225 CTCATCATGTGATTCTTGTTACACTAAATTTATAGTTTGGAAACTATATATATACTATTA 2284
||||||||||||||||||| ||||| ||| |||||||||||||||||||| || | | |
Sbjct 2192 CTCATCATGTGATTCTTGTGACACTTAATACATAGTTTGGAAACTATATAT-TA-T-T-A 2247
Query 2285 AGCAACGTTTACTAAAGATTT-CTTGATACATTTTGATTTATCT 2327
||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 2248 AGCAAAGTTTACTAAAGATTTTCTTGATACATTTTGATTTATCT 2291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87645653745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5