BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G49475.1

Length=904
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314370 jgi|Araly1|314370|fgenesh1_pm.C_scaffold_1003150           597    4e-170


> Ahg314370 jgi|Araly1|314370|fgenesh1_pm.C_scaffold_1003150
Length=507

 Score =  597 bits (323),  Expect = 4e-170
 Identities = 419/464 (90%), Gaps = 12/464 (3%)
 Strand=Plus/Plus

Query  73   ATGCATACTAACCGGAGATCACCGGGTC-CAATCACGTCGGCAGCAACTCAACGCCGGCT  131
            ||||||||||||||||||||| |||||| | |||||||| |||||||||||||| |||||
Sbjct  1    ATGCATACTAACCGGAGATCATCGGGTCGC-ATCACGTCAGCAGCAACTCAACGGCGGCT  59

Query  132  AAAACCGGAGCCAGAACCGACGGTGAAGAAATTCATCAAGATTATTCTCCTCTCAAGAAT  191
            ||||||||||||||||||| |||||||||||||||||||| |||||||| ||  || |||
Sbjct  60   AAAACCGGAGCCAGAACCGGCGGTGAAGAAATTCATCAAGGTTATTCTCTTCAAAACAAT  119

Query  192  CATA-GAAAAAATGATGAAAGTTCCGGCTAGATTTGTGAGGTTTGGTCCTAAACTCACTG  250
            || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CA-AGGAAAAAATGATGAAAGTTCCGGCTAGATTTGTGAGGTTTGGTCCTAAACTCACTG  178

Query  251  ACAACGTGACTCTCCAGACTCCTGTTGGTTTCAAGAGATCAATTCGGATTAAAAGAATCG  310
            |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  179  ACAATGTGACTCTCGAGACTCCTGTGGGTTTCAAGAGATCAATTCGGATTAAAAGAATCG  238

Query  311  GTGATGAGGTTTGGTTCGAGAAAGGTTGGAGTGAGTTTGCAGAGGCTCACTCTTTAAGTG  370
            |||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct  239  GTGATGAGGTTTGGTTTGAGAAAGGTTGGAGTGAGTTTGCAGAGGCTCATTTTTTAAGTG  298

Query  371  ATGGTCACTTTCTGTTTTTTCATTACGAAGGGGATTCTTGTTTCCGTGTTGTGATCTTTG  430
            ||||||| |||||||||||||||||  |||||||||| ||||| ||||||||||||||||
Sbjct  299  ATGGTCATTTTCTGTTTTTTCATTATAAAGGGGATTCATGTTTTCGTGTTGTGATCTTTG  358

Query  431  ATGTGTCTGCTTCTGAGATTGAATATCCATTGGATGATACTG-ATGATAATAGAGAA-GA  488
            ||||||||||||||||||||||||||||||||||  | | |  ||| | || ||||  ||
Sbjct  359  ATGTGTCTGCTTCTGAGATTGAATATCCATTGGACAA-AGTTTATG-TCATTGAGAGTGA  416

Query  489  AGTT-ATGGATGATGATGAACAAG--GGTTTACTGGTTTTGAAA  529
             | | ||| |||||||| || |||  ||||||| || |||||||
Sbjct  417  TGCTGATG-ATGATGATAAAGAAGAAGGTTTACCGGATTTGAAA  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33510044043


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5