BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49480.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923360 jgi|Araly1|923360|scaffold_104641.1 1138 0.0
> Ahg923360 jgi|Araly1|923360|scaffold_104641.1
Length=721
Score = 1138 bits (616), Expect = 0.0
Identities = 667/692 (96%), Gaps = 2/692 (0%)
Strand=Plus/Plus
Query 497 CTTATGCAAATGGATTCCGCACAGAATCAGTTCAACAAACGTGCTCGATTGTTTGAAGAT 556
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 18 CTTATGGAAATGGATTCCGCACAGAATCAGTTTAACAAACGTGCTCGATTGTTTGAAGAC 77
Query 557 CCTGAACTCAAAGATGCTAAGGTCATTTATCCATCGAACCCTGAATCTACTGAACCAGTG 616
||| || ||||||||||||||||||||||||||||||||||| |||||||||| | | |
Sbjct 78 CCTCAAGACAAAGATGCTAAGGTCATTTATCCATCGAACCCTGGATCTACTGAAGCGGCG 137
Query 617 AATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 AATAAAGGTTATGGCGGTTCTACAGCCATCCAAAGCTTTTTCAAAGAATCTAAAGCTGAA 197
Query 677 GAAACGCCCAAGGTACTTaagaagagaggaaggaagaagaagaaTCCTAATCCCGAGGAA 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GAAACGCCCAAGGTACTTAAGAAGAGAGGAAGGAAGAAGAAGAATCCTAATCCCGAGGAA 257
Query 737 GTAAACTCTTCAACTCCCGGTGGAGATGACTCAGAGAACCGCTCAAAGTTCTACGAGAGT 796
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 258 GTAAACTCTTCAACTCCGGGTGGAGATGACTCAGAGAACCGTTCAAAGTTCTACGAGAGT 317
Query 797 GCTTCTGCTAGAAAGAGAACTGTAACTGCAGAGGAAAGAGAGAGAGCCGTCAATGCAGCC 856
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 318 GCTTCTGCTAGAAAGAGAACTGTAACCGCAGAGGAAAGAGAGCGAGCCGTCAATGCAGCC 377
Query 857 AAAACATTCGAACCAACAAATCCTTACTTTAGAGTTGTTCTGCGACCATCATATCTATAC 916
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 378 AAAACATTCGAACCAGCCAATCCTTACTTTCGAGTTGTTCTGCGACCATCATATCTATAC 437
Query 917 AGAGGTTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAATACCTAAGTGGGATATCT 976
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 438 AGAGGCTGCATCATGTACTTGCCATCTGGGTTTGCTGAGAAGTACCTAAGCGGGATATCT 497
Query 977 GGTTTCATCAAGCTCCAGCTCGGTGAGAAACAATGGCCAGTGAGGTGCCTCTACAAAGCA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 498 GGTTTCATCAAGCTCCAGCTCGGTGAGAAACAATGGCCAGTGAGGTGCCTCTATAAAGCA 557
Query 1037 GGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GGGAGAGCTAAGTTTAGCCAAGGATGGTATGAGTTCACACTCGAGAACAATATAGGCGAA 617
Query 1097 GGAGATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCGTTCTCGAA-GTCACCGC 1155
|||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||
Sbjct 618 GGAGATGTATGTGTGTTTGAGCTACTCAGAACTCGGGATTTCATTCT-GAAAGTCACCGC 676
Query 1156 CTTTCGTGTCAATGAGTATGTGTGACCAAAAA 1187
||||||||||||||| ||||||||||||||||
Sbjct 677 CTTTCGTGTCAATGAATATGTGTGACCAAAAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5