BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49490.1
Length=2544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347509 jgi|Araly1|347509|fgenesh1_pg.C_scaffold_5000901 1866 0.0
Ahg914043 jgi|Araly1|914043|Al_scaffold_0001_4297 688 0.0
> Ahg347509 jgi|Araly1|347509|fgenesh1_pg.C_scaffold_5000901
Length=1488
Score = 1866 bits (1010), Expect = 0.0
Identities = 1192/1276 (93%), Gaps = 27/1276 (2%)
Strand=Plus/Plus
Query 134 TCAATAAAGTTGAT-CCTAACCTCAAATTTGAAAATGATCGTCTCAAAAGAGCTTACATT 192
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 TCAATAAAGTCGATCCCTAACCTCAAATTTGAAAATGATCGTCTCAAAAGAGCTTACATT 270
Query 193 GCTCTTCAAGCATGGAAAAAAGCCATTTACTCTGATCCATTTAAAACTACGGCCAATTGG 252
||||||||||| |||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct 271 GCTCTTCAAGCGTGGAAAAAAGCCATTTACTCGGACCCGTTTAAGACTACAGCCAATTGG 330
Query 253 GTTGGTTCTGATGTGTGTTCATACAATGGAGTTTATTGTGCACCTGCTCTAGATGATGAT 312
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 331 GTTGGTTCTGATGTGTGTTCTTACAATGGAGTTTATTGTGCACCTGCTCTAGATGATGAT 390
Query 313 AGTCTCACGGTCGTAGCTGGAGTTGACCTTAACCATGCAGATATAGCCGGACATTTACCA 372
|| ||||||||||||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct 391 AGCCTCACGGTCGTAGCTGGAGTTGATCTTAATCACGCGGATATAGCCGGACATTTACCA 450
Query 373 CCAGAGCTTGGCCTTATGACGGACCTAGCTTTATTTCACATCAATTCGAATCGGTTTTGT 432
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 451 CCAGAGCTTGGCCTTATAACGGACCTAGCTTTGTTTCACATCAATTCTAATCGGTTTTGT 510
Query 433 GGGATCATCCCCAAAAGTTTATCGAAACTCGCTTTGATGTACGAATTCGATGTTAGCAAC 492
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 511 GGGATTATTCCCAAAAGTTTATCGAAACTCGCTTTGATGTATGAATTCGATGTTAGCAAC 570
Query 493 AATCGATTCGTTGGTCAGTTCCCTGAAGTTTCACTCTCATGGCCTTCTTTGAAGTTTCTT 552
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 571 AATCGATTCGTTGGTCAGTTCCCTGAAGTTTCACTCTCGTGGCCTTCTTTGAAGTTTCTT 630
Query 553 GATCTAAGATACAACGAATTTGAAGGAAGCTTGCCATCAGAAATCTTTGATAAAGATCTT 612
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 631 GATCTAAGATACAATGAATTCGAAGGAAGTTTGCCATCAGAGATCTTTGATAAAGATCTT 690
Query 613 GATGCAAT-TTTCTTGAACAACAATCGGTTTGAATCGGTTATCCCCGGTACAATTGGGAA 671
|||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 691 GATGCAATCTTT-TTGAATAACAATCGGTTTGAATCGGTTATCCCGGGTACAATTGGGAA 749
Query 672 ATCGAAAGCATCGGTTGTGACATTCGCAAACAATAAATTCAGTGGTTGTATCCCAAAATC 731
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 750 ATCGAAAGCATCGGTTGTGACATTCGCAAACAATAAATTCATTGGTTGTATCCCAAAATC 809
Query 732 GATTGGTAATATGAAGAACCTCAATGAGATTGTCTTCACTGGAAACAATTTAACCGGTTG 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GATTGGTAATATGAAGAACCTCAATGAGATTGTCTTCACTGGAAACAATTTAACCGGTTG 869
Query 792 TTTCCCAAACGAGATTGGTTTGCTTAACAATGTGACGGTGTTTGATGCAAGCAAGAACGG 851
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 870 TTTCCCAAACGAGATTGGTTTGCTTAACAATGTGACGGTGTTTGATGCGAGCAAGAACGG 929
Query 852 TTTTGTCGGTAGTTTACCGTCAACCTTGTCCGGTTTAGCTAGCGTTGAGCAGTTAGATTT 911
|||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 930 TTTTGTTGGTAGTTTACCGACAACATTGTCCGGTTTAGCTAGCGTTGAGCAGTTGGATTT 989
Query 912 ATCGCATAATAAGCTCACCGGATTTGTTGTTGACAAATTTTGCAAGTTGCCTAATTTGGA 971
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 990 ATCGCATAATAAGCTCACCGGATTTGTTGTCGACAAATTTTGCAAATTGCCTAATTTAGA 1049
Query 972 CAGCTTCAAGTTTTCTTACAATTTTTTCAATGGAGAAGCTGAGAGCTGTGTTCCAGGGAG 1031
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1050 GAGCTTCAAGTTTTCTTACAATTTTTTCAATGGAGAAGCTGAGAGCTGTATTCCAGGGAG 1109
Query 1032 AAACAATGGGAAACAATTTGATGATACCAACAATTGCTTGCAAAATAGACCGAGCCAAAA 1091
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1110 AAACAATGGGAAACAATTTGATGATACCAACAATTGCTTGCAGAATAGACCGAGTCAAAA 1169
Query 1092 GCCGGCTAAACAATGTTTGCCGGTGGTTAGTCGTCCTGTGGATTGTAGCAAGGACAAATG 1151
||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1170 GCCTGCTAAGCAATGTTTGCCCGTGGTTAGTCGTCCCGTGGATTGTAGCAAGGACAAGTG 1229
Query 1152 CTCTGGCGGTAGCAATGGTGGCTCTAGCCCATCACCAAATCCACCAAGGACGTCCGAGCC 1211
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TTCTGGCGGTAGCAACGGTGGCTCTAGCCCATCACCAAATCCACCAAGGACGTCCGAGCC 1289
Query 1212 AAAGCCATCAAAACCAGAGCCGGTTATGCCTAAACCTAGTGATTCA--T---C---AA-- 1261
||||||||||||||||||||||||| ||||||| |||||||| ||| | | ||
Sbjct 1290 AAAGCCATCAAAACCAGAGCCGGTTGTGCCTAAGCCTAGTGAATCACCTAAACCGGAACC 1349
Query 1262 A-A----CC--CGAGAC---A--C-C-AAAAACACCTGAACAACCTTCACCTAAACCTCA 1307
| | || | | || | | | ||||||||| |||||||| ||||||||||||||
Sbjct 1350 ACAAAAACCATCAAAACCCCAGACACCAAAAACACCAGAACAACCATCACCTAAACCTCA 1409
Query 1308 GCCACCAAAGCATGAATCTCCTAAACCGGAAGAACCGGAAAACAAGCATGAGCTACCAAA 1367
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1410 GCCACCAAAGCATGAATCTCCTAAACCGGAAGAACCAGAAAACAAGCCCGAGCTACCAAA 1469
Query 1368 ACAAAAGGAGTCTCCT 1383
|||| |||||||||||
Sbjct 1470 ACAAGAGGAGTCTCCT 1485
> Ahg914043 jgi|Araly1|914043|Al_scaffold_0001_4297
Length=618
Score = 688 bits (372), Expect = 0.0
Identities = 549/630 (87%), Gaps = 29/630 (5%)
Strand=Plus/Plus
Query 1932 TACAAAC-CAACCACCAATGGGAGCTCCAACACCGACTCAAGCACCAACACCATCCTCTG 1990
||| ||| ||||||||| || ||||||| ||||||| |||||| ||||| ||||||||||
Sbjct 1 TAC-AACTCAACCACCAGTGAGAGCTCC-ACACCGATTCAAGCCCCAACTCCATCCTCTG 58
Query 1991 AAACAACCCAAGTGCCAACTCCATCATCAGAATCAGATCAATCACAAAT-TTTGTCACCA 2049
||||||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||
Sbjct 59 AAACAACCCAAGTGCCAACTCCATCATCAGAATCATATCAAGCAC-CATCTTTGTCACCA 117
Query 2050 GTTCAAGCTCCAACACCGGTTCAATCCTCAACCCCATCCTCTGAACCAACCCAAGTGCCA 2109
||||||||||||||||||||||| || ||||| |||||||||| || ||||||| |||
Sbjct 118 ATTCAAGCTCCAACACCGGTTCAAGCCCCAACCAAATCCTCTGAAACATCCCAAGTACCA 177
Query 2110 ACTCCATCATCATCAGAATC-ATATCAAGCACCAAATTT-GTCACCAGTTCAAGCT---- 2163
||| | ||||||||||||| | | ||| |||| ||||| |||||||||||||||
Sbjct 178 ACT-C--CATCATCAGAATCGA-ACCAATCACC-AATTTCATCACCAGTTCAAGCTCCAA 232
Query 2164 --CCAA--C----ACCGGTTCAAGCCCCAACCACATCCTCTGAAACATCTCAAGTACCAA 2215
|||| | |||||||||||||||||||| ||| ||||||||||| |||| |||||
Sbjct 233 CACCAATTCTTGAACCGGTTCAAGCCCCAACCAAATCATCTGAAACATCCCAAGCACCAA 292
Query 2216 CTCCATCATCAGAATCAAACCAGTCACCAAGTCAAGCTCCAACACCAATTCTTGAACCGG 2275
||||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 293 GTCCATCACCAGAATCATTCCAATCACCAAGTCAAGCTCCAACGCCAATTCTTGAACCGG 352
Query 2276 TTCATGCCCCAACACCAAACTCTAAACCGGTCCAATCACCAACACCATCAAGCGAACCGG 2335
||||||||||||||||||| |||||||||| ||| ||||||| |||||||| ||||||||
Sbjct 353 TTCATGCCCCAACACCAAATTCTAAACCGGACCAGTCACCAATACCATCAAACGAACCGG 412
Query 2336 TCTCATCACCAGAACAATCAGAAGAAGTTGAAGCACCAGAACCAA-CACCCGTCAATCCA 2394
||||||||||| ||||||||||||||| ||||||||||||| ||| |||||| || ||||
Sbjct 413 TCTCATCACCAAAACAATCAGAAGAAGGTGAAGCACCAGAA-CAATCACCCGCCACTCCA 471
Query 2395 TCATCAGTACCATCATCTTCTCCTTCCACTGACACATCTATTCCACCACCGGAAAACAAC 2454
||||| ||| ||||||||||| || | |||||| || ||||||||||||||||||||
Sbjct 472 TCATC---ACCGTCATCTTCTCCGCCCTCCGACACAGCTGTTCCACCACCGGAAAACAAC 528
Query 2455 GACGATGATGATGATGGGGATTTCGTCCTACCACCACACATTGGATTCCAATATGCATCG 2514
||||||||||| || || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 529 GACGATGATGACGACGGTGATTTCGTCTTACCACCACACATTGGATTCCAATATGCATCA 588
Query 2515 CCACCACCACCAATGTTCCAAGGATATTAA 2544
||||||||||| |||||||||||||| |||
Sbjct 589 CCACCACCACCGATGTTCCAAGGATACTAA 618
Score = 283 bits (153), Expect = 4e-75
Identities = 254/298 (85%), Gaps = 26/298 (9%)
Strand=Plus/Plus
Query 2045 CACCAGTTCA-AGCTCCAACACCGGTTCAATCCTCAACCCCATCCTCTGAACCAACCCAA 2103
|||||| | | |||||| |||||| ||||| || |||| |||||||||||| ||||||||
Sbjct 12 CACCAG-TGAGAGCTCC-ACACCGATTCAAGCCCCAACTCCATCCTCTGAAACAACCCAA 69
Query 2104 GTGCCAACTCCATCATCATCAGAATCATATCAAGCACCAAATTTGTCACCAGTTCAAGCT 2163
||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 70 GTGCCAACT-C--CATCATCAGAATCATATCAAGCACCATCTTTGTCACCAATTCAAGCT 126
Query 2164 CCAACACCGGTTCAAGCCCCAACCACATCCTCTGAAACATCTCAAGTACCAACTCCATCA 2223
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 127 CCAACACCGGTTCAAGCCCCAACCAAATCCTCTGAAACATCCCAAGTACCAACTCCATCA 186
Query 2224 TCAGAATCAAACCAGTCACCAA-----------GT-CAAGCTCCAACACCAATTCTTGAA 2271
|||||||| ||||| ||||||| || ||||||||||||||||||||||||
Sbjct 187 TCAGAATCGAACCAATCACCAATTTCATCACCAGTTCAAGCTCCAACACCAATTCTTGAA 246
Query 2272 CCGGTTCATGCCCCAACACCAAA-C-TCT-AAACCGGTCC-AATCACCAACACCATCA 2325
|||||||| |||||||| | ||| | ||| |||| ||| || |||||| ||||||
Sbjct 247 CCGGTTCAAGCCCCAAC-C-AAATCATCTGAAACA--TCCCAAGCACCAAGTCCATCA 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95911236910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5