BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G49510.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474088 jgi|Araly1|474088|fgenesh2_kg.1__4042__AT1G49510.1 1434 0.0
> Ahg474088 jgi|Araly1|474088|fgenesh2_kg.1__4042__AT1G49510.1
Length=1130
Score = 1434 bits (776), Expect = 0.0
Identities = 953/1035 (92%), Gaps = 25/1035 (2%)
Strand=Plus/Plus
Query 155 AAATGGCGATGTCTCATCTCTTTCTTTCTTCTTCGCCTCAATCTTCACTGGCTCTGCGAC 214
|||||||||||||||||||| ||| | |||||| |||| | |||||||||| |||||||
Sbjct 93 AAATGGCGATGTCTCATCTC-TTC-CT-TTCTTCACCTCGACCTTCACTGGCCCTGCGAC 149
Query 215 TTCACTCGACGACCCAGTTCACGTTGAGCTACTCTAAGAACAATAAAGATTGTTCCTTTC 274
|||||||||| ||||||||||||||||| || | ||||||||||||| |||||
Sbjct 150 TTCACTCGACTACCCAGTTCACGTTGAG-----CT--G--CAATAAAGATTGTACCTTTA 200
Query 275 AGAGTGCAAATGAAGCTAAAGTATCAAAGAGATC-GT--TGCTCTGTCGTGCAATTCATA 331
|| |||||||||||||| |||||||||||||||| | | |||||||||||||||||||
Sbjct 201 AGTGTGCAAATGAAGCTGAAGTATCAAAGAGATCATTCCTCCTCTGTCGTGCAATTCATA 260
Query 332 TGGAATCTGGACATTCAGGGGAACAACCAAAGAAGCTTAATTTCGATAATCTGTTGAGGA 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TGGAATCTGGACATTCAGGGGAACAACCAAAGAAGCTTAATTTCGATAATCTGTTGAGGA 320
Query 392 GAACCAAACATGTTTGGGATAATTCTCCACAGCCGGTTAAGGAATTTCCTTGGAATAGAG 451
||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 321 AAACTAAACATGTTTGGGATAATTCTCCACAACCGGTCAAGGAATTCCCTTGGAATAGAG 380
Query 452 CATTCGGAAACTTCATACAGCTCGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGT 511
|||| | |||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 381 CATTTGAAAACTTTATACAGCTTGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGT 440
Query 512 TCGTTCCTATATTGGCGGTTTCTTCCATTAGTGAGATGTCTTATTGTGCTCATGAGAGGA 571
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 441 TTGTTCCTATATTGGCGGTTTCTTCCATCAGTGAGATGTCTTATTGTGCACATGAGAGGA 500
Query 572 AACTTGCTTTAGTCCCATTTCCATTAGTCATCGGTATGGTTGTCGCTGGCGTTCTACAAG 631
|||||||||||||||| ||||| |||||||||||| ||||||| |||||| |||||||||
Sbjct 501 AACTTGCTTTAGTCCCGTTTCCGTTAGTCATCGGTGTGGTTGTTGCTGGCATTCTACAAG 560
Query 632 AAACCGCTTTGAAGATCTCGCCTCGTCTTAAGGAAGCGGAAGTACCGTGGCATTTGATAG 691
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AAACCGCGTTGAAGATCTCTCCTCGTCTTAAGGAAGCGGAAGTACCGTGGCATTTGATAG 620
Query 692 CTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCATATTACCCGTATTGGGGGC 751
|||||||||||||||||||||||||||||||||||||||| || || || |||||||| |
Sbjct 621 CTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCGTACTATCCATATTGGGGAC 680
Query 752 GTTTATTAGTTCCACATTTTGCAAATGGAGTATTACTTAGAGCACTTTGGTCCATGTTCT 811
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 681 GTTTATTTGTTCCACATTTTGCAAATGGAGTATTGTTTAGAGCACTTTGGTCCATGTTTT 740
Query 812 TTTGGTATAAGAAGACTAGAAACACATCAGGAAATCCTCTGCAGAATCACAGTTTGGAAA 871
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 741 TTTGGTATAAGAAGACTAGAAACACATCAGGAAATCCTCTGCAGAATCCCAGTTTGGAAA 800
Query 872 CAGAATGAGCATCTTCATCAAAAGGCTGGT-GTTTTAAAG-TGCCAAGTGGTCACTT-TG 928
|| |||||||||||||||| ||||| ||| ||||| || |||||| |||||| || ||
Sbjct 801 CAAAATGAGCATCTTCATCTAAAGG--GGTTGTTTTTTAGGTGCCAACTGGTCA-TTATG 857
Query 929 ATTAGTTTCGGGGATTATCTGGAACC-TCGTGGAGTAGTGTTCGAGCATAGATAGGAGct 987
|||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 858 ATTAGTTTCGGGGATTATCTGGAACCCTCGCGGATTAGTGTTCGAGCATAGATAGGAGCT 917
Query 988 ttcttcttcttctttt-ctctcttcAATCTCAGAGAAGTTGAGGTTAATGAGTTAACAAC 1046
|||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 918 TTCTTCTTATTTTTTTTCTCTCTTCAATCTCAGAGAAGTTGAGGTCAATGAGTTAACAAC 977
Query 1047 ATCTTTTAGGCCATAGAATTGTTTTGTTTTGTGTTCTCTTCTTTGGAAAATTGTCTCAGT 1106
||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 978 ATCTTTTCGGCCATAGAATTGTTTTGTTTTGTGTTC-CTTCTTTGGAAGATTGTCACAGT 1036
Query 1107 TCTTGTGAAAACCGCTATTCTTTGGATATGTATTTGTATCTTGAGTTTTTGTTTTTGGTC 1166
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1037 TCTTGTGAAAACCGCTGTTCTTTGGGTATGTATTTGTATCTTGAGTTTTTGTTTTTGGTC 1096
Query 1167 A-GACAAAATTTTAT 1180
|||||||||||||
Sbjct 1097 TTGACAAAATTTTAT 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5